TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000042_1.0 # Protein # Selenoprotein H2 (SelH2) # Drosophila melanogaster # Complete (146 letters) Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFNH01002631.1| Gregarina niphandrodes asmbl.3356, whole geno... 28 1.5 gb|AFNH01000986.1| Gregarina niphandrodes asmbl.1852, whole geno... 28 1.5 gb|AFNH01002349.1| Gregarina niphandrodes asmbl.3095, whole geno... 27 1.9 gb|AFNH01002062.1| Gregarina niphandrodes asmbl.2833, whole geno... 27 1.9 gb|AFNH01001896.1| Gregarina niphandrodes asmbl.2680, whole geno... 27 1.9 gb|AFNH01002836.1| Gregarina niphandrodes asmbl.3549, whole geno... 27 3.3 gb|AFNH01002600.1| Gregarina niphandrodes asmbl.3326, whole geno... 27 3.3 gb|AFNH01002429.1| Gregarina niphandrodes asmbl.3170, whole geno... 27 3.3 gb|AFNH01000703.1| Gregarina niphandrodes asmbl.16009, whole gen... 27 3.3 gb|AFNH01001981.1| Gregarina niphandrodes asmbl.2758, whole geno... 26 4.3 gb|AFNH01000685.1| Gregarina niphandrodes asmbl.15994, whole gen... 26 4.3 gb|AFNH01002601.1| Gregarina niphandrodes asmbl.3327, whole geno... 26 5.6 gb|AFNH01002512.1| Gregarina niphandrodes asmbl.3245, whole geno... 26 5.6 gb|AFNH01002339.1| Gregarina niphandrodes asmbl.3085, whole geno... 26 5.6 gb|AFNH01002337.1| Gregarina niphandrodes asmbl.3083, whole geno... 26 5.6 gb|AFNH01002278.1| Gregarina niphandrodes asmbl.3027, whole geno... 26 5.6 gb|AFNH01000688.1| Gregarina niphandrodes asmbl.15997, whole gen... 26 5.6 gb|AFNH01002633.1| Gregarina niphandrodes asmbl.3359, whole geno... 25 7.3 gb|AFNH01002351.1| Gregarina niphandrodes asmbl.3097, whole geno... 25 7.3 gb|AFNH01001636.1| Gregarina niphandrodes asmbl.2441, whole geno... 25 7.3 gb|AFNH01000417.1| Gregarina niphandrodes asmbl.1373, whole geno... 25 7.3 gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole geno... 25 9.6 gb|AFNH01001715.1| Gregarina niphandrodes asmbl.2513, whole geno... 25 9.6 >gb|AFNH01002631.1| Gregarina niphandrodes asmbl.3356, whole genome shotgun sequence Length = 14511 Score = 27.7 bits (60), Expect = 1.5 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 53 INDKGPPEDGSFEVAIAPQPTDDSTARQSVWTG-LRRMPSASKVPH 97 +++ GPP+D A A QP T Q WTG R P + K+ H Sbjct: 12472 VSESGPPDDEQLLKASAVQP---PTPVQMAWTGYCIRSPRSWKLEH 12600 >gb|AFNH01000986.1| Gregarina niphandrodes asmbl.1852, whole genome shotgun sequence Length = 1316 Score = 27.7 bits (60), Expect = 1.5 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = -3 Query: 87 RRMPSASKVPHVDDILTPVCFALKLRDPH--KESHRRMLTNLRHNEGSRPRT 136 RR PS + PHV PVC A DPH ++S + L LR G P T Sbjct: 663 RRGPSDALGPHV---FPPVCSASCRSDPHRQRDSTKNRLECLRRFVG*APPT 517 >gb|AFNH01002349.1| Gregarina niphandrodes asmbl.3095, whole genome shotgun sequence Length = 24322 Score = 27.3 bits (59), Expect = 1.9 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 103 TPVCFALKLRDPHKESHRR--MLTNLRHNEGSRPRTR 137 T C L+L PH HRR +L LR+ PR R Sbjct: 5660 TRSCSRLRLPTPHPTDHRRSVLLRTLRYRGPRHPRRR 5770 >gb|AFNH01002062.1| Gregarina niphandrodes asmbl.2833, whole genome shotgun sequence Length = 12989 Score = 27.3 bits (59), Expect = 1.9 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -1 Query: 79 RQSVWTGLRRMPSASKVPHVDDILTPVCFA-LKLRDPHKESHRRMLTNLRHNEGSRPRT 136 R V G ++ P+A VPHV L +A L + H + + L RH++G RPRT Sbjct: 3065 RVLVAAGQKQRPAA--VPHVAVHLFQRAYASLAPAELHVQREQPALLVSRHHDGRRPRT 2895 >gb|AFNH01001896.1| Gregarina niphandrodes asmbl.2680, whole genome shotgun sequence Length = 56005 Score = 27.3 bits (59), Expect = 1.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 115 HKESHRRMLTNLRHNEGSRPRTRT 138 H +SH +++++ HN S PRTR+ Sbjct: 21172 HNQSHSLVMSHILHNIHSSPRTRS 21101 >gb|AFNH01002836.1| Gregarina niphandrodes asmbl.3549, whole genome shotgun sequence Length = 8558 Score = 26.6 bits (57), Expect = 3.3 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = -2 Query: 96 PHVDDILTPVCFALKLRDPHKESHRRMLTNLRHNEGSRPRT 136 P +P C A+ R P RR + R SRP+T Sbjct: 4993 PRTPSFSSPFCAAVPKRRPRSRPKRRPRSRPRRRPRSRPKT 4871 >gb|AFNH01002600.1| Gregarina niphandrodes asmbl.3326, whole genome shotgun sequence Length = 9719 Score = 26.6 bits (57), Expect = 3.3 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = -3 Query: 78 ARQSVWTGLRRMPSASKVPHVDDILTPVCFALKLRDPHKESHRRMLTNLRHNEGSRPRTR 137 A+ TG RR+ S+ DD P C A + R PH+ R TN R TR Sbjct: 3687 AKSMQQTG*RRVTKDSRTRAGDDNWHPGCCAGQDRQPHQGKCRLAATNNGRTV*QRRSTR 3508 >gb|AFNH01002429.1| Gregarina niphandrodes asmbl.3170, whole genome shotgun sequence Length = 10290 Score = 26.6 bits (57), Expect = 3.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 104 PVCFALKLRDPHKESHRRMLTNLR 127 PV L PH SHR +LTN++ Sbjct: 9500 PVIIHQNLNMPHTTSHRHLLTNIQ 9571 >gb|AFNH01000703.1| Gregarina niphandrodes asmbl.16009, whole genome shotgun sequence Length = 21887 Score = 26.6 bits (57), Expect = 3.3 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -3 Query: 67 AIAPQPTDDSTAR---QSVWTGLRRMPSASKVPHVDDILTPVCFALKLRDPHKESHR 120 ++ P+P + R Q + +R+P+ PHV L P AL++ P HR Sbjct: 1575 SVPPRPPPLARPRRRPQPQFLAPQRLPAQQHPPHVQPQLRPPQAALRIPPPRTGQHR 1405 >gb|AFNH01001981.1| Gregarina niphandrodes asmbl.2758, whole genome shotgun sequence Length = 8956 Score = 26.2 bits (56), Expect = 4.3 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 87 RRMPSASK-VPHVDDILTPVCFALKLRDPHKESHRRMLTNLRHNEGS 132 R + +AS+ VPH DD+L L+ H+ S+ R + +H S Sbjct: 4199 RSLHAASRDVPHADDLLFVHVLRLRADRAHRLSNHRKMVPRQHQHPS 4339 >gb|AFNH01000685.1| Gregarina niphandrodes asmbl.15994, whole genome shotgun sequence Length = 8241 Score = 26.2 bits (56), Expect = 4.3 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 12/53 (22%) Frame = -1 Query: 43 IQPRVKLQLRINDKGPPEDGSFEV------------AIAPQPTDDSTARQSVW 83 + +++++ND+GPP G V A P+ T + A+ S+W Sbjct: 339 VSSNASVRIKLNDEGPPVVGILAVQRTTEQRTTEQRASVPRSTQSTVAQVSLW 181 >gb|AFNH01002601.1| Gregarina niphandrodes asmbl.3327, whole genome shotgun sequence Length = 18561 Score = 25.8 bits (55), Expect = 5.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -1 Query: 43 IQPRVKLQLRINDKGPPEDGSFEVAIAPQPTDDSTARQSVWTGL 86 +QP K QL++ K P DG+F + D +T + W+G+ Sbjct: 17595 VQPAPKKQLQVMTKLPRNDGTFPEG---RHGDGTTGQFVEWSGI 17473 >gb|AFNH01002512.1| Gregarina niphandrodes asmbl.3245, whole genome shotgun sequence Length = 12420 Score = 25.8 bits (55), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 70 PQPTDDSTARQSVWTGLRRMPSASKVP 96 P P+ ARQ VWT LR +A++ P Sbjct: 2030 PPPSRLGPARQVVWTRLRIPTTATRTP 1950 >gb|AFNH01002339.1| Gregarina niphandrodes asmbl.3085, whole genome shotgun sequence Length = 20559 Score = 25.8 bits (55), Expect = 5.6 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = +3 Query: 73 TDDSTARQSVWTGLRRMPSASKVPHVDDILTPVCFALKLRDPHKESHRRMLTNLRHNEGS 132 TD ST +Q +PSAS +P L R PH SHR LR G Sbjct: 19773 TDSSTPKQ--------LPSASTLP----------LPLLWRKPHPPSHRMQRLPLRTQLGI 19898 Query: 133 RPR 135 R R Sbjct: 19899 R*R 19907 >gb|AFNH01002337.1| Gregarina niphandrodes asmbl.3083, whole genome shotgun sequence Length = 53849 Score = 25.8 bits (55), Expect = 5.6 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +3 Query: 108 ALKLRDPHKESHRRMLTNL---RHNEGSRPRTRTI 139 AL LR PH++SHR + H + S P T+ Sbjct: 48942 ALNLRQPHRKSHRTKAVPVPINTHLDSSTPNAGTL 49046 >gb|AFNH01002278.1| Gregarina niphandrodes asmbl.3027, whole genome shotgun sequence Length = 35149 Score = 25.8 bits (55), Expect = 5.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 102 LTPVCFALKLRDPHKESHRRMLTNLRHNEGSRP 134 L+ V F LRDP + L NLRH +RP Sbjct: 17719 LSDVAFT-SLRDPSPAAEFASLANLRHTRRARP 17814 >gb|AFNH01000688.1| Gregarina niphandrodes asmbl.15997, whole genome shotgun sequence Length = 27684 Score = 25.8 bits (55), Expect = 5.6 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 77 TARQSVWTGLRRMPSASKVPHVDDILTPVCF 107 T W + +P + VP++DD+LT V F Sbjct: 25290 TKESGCWRYIESLPK-NLVPYIDDLLTSVAF 25379 >gb|AFNH01002633.1| Gregarina niphandrodes asmbl.3359, whole genome shotgun sequence Length = 62082 Score = 25.4 bits (54), Expect = 7.3 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +2 Query: 113 DPHKESHRRMLTNLRHNEG 131 DPH SH R +++ H EG Sbjct: 21827 DPHTSSHSRPVSHTSHGEG 21883 >gb|AFNH01002351.1| Gregarina niphandrodes asmbl.3097, whole genome shotgun sequence Length = 8522 Score = 25.4 bits (54), Expect = 7.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 53 INDKGPPEDGSFEVAIAPQPTD 74 +ND GPP+DG P PTD Sbjct: 2311 VNDDGPPKDG------PPSPTD 2264 >gb|AFNH01001636.1| Gregarina niphandrodes asmbl.2441, whole genome shotgun sequence Length = 2702 Score = 25.4 bits (54), Expect = 7.3 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = +1 Query: 92 ASKVPHVDDI---LTPVCFALKLRDPHKESHRRMLTNLRHNE-GSRPRTRT 138 A V HV + LTP C A LRD ++ + N R N G+R R T Sbjct: 2350 ADDVTHVRPVGRGLTPTCCASALRDVNQWG*NENIKNGRQNACGARKRCTT 2502 >gb|AFNH01000417.1| Gregarina niphandrodes asmbl.1373, whole genome shotgun sequence Length = 1060 Score = 25.4 bits (54), Expect = 7.3 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = +2 Query: 92 ASKVPHVDDI---LTPVCFALKLRDPHKESHRRMLTNLRHNE-GSRPRTRT 138 A V HV + LTP C A LRD ++ + N R N G+R R T Sbjct: 122 ADDVTHVRPVGRGLTPTCCASALRDVNQWG*NENIENGRQNACGARKRCTT 274 >gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole genome shotgun sequence Length = 60929 Score = 25.0 bits (53), Expect = 9.6 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -3 Query: 66 VAIAPQPTDDSTARQSVWTGLRRMP 90 V +AP+P + AR +W GL P Sbjct: 32475 VTVAPEPARLAPARPPLWPGLTTSP 32401 >gb|AFNH01001715.1| Gregarina niphandrodes asmbl.2513, whole genome shotgun sequence Length = 8405 Score = 25.0 bits (53), Expect = 9.6 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 4/57 (7%) Frame = +3 Query: 83 WTGLRRMPSASKVPHVDDILTPVC----FALKLRDPHKESHRRMLTNLRHNEGSRPR 135 WTGLRR H + T L LR PH + H + H RPR Sbjct: 2340 WTGLRRGAG-----HALQV*TGAARRNAACLPLRQPHSQRHLQCCLRESHRPQIRPR 2495 Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa Posted date: Sep 29, 2011 11:25 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,132,029 Number of Sequences: 3680 Number of extensions: 51355 Number of successful extensions: 353 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 353 length of query: 146 length of database: 5,120,956 effective HSP length: 85 effective length of query: 61 effective length of database: 4,808,156 effective search space: 293297516 effective search space used: 293297516 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)