TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000041_1.0 # Protein # Selenoprotein H1 (SelH1) # Drosophila melanogaster # Complete (249 letters) Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaff... 29 3.5 >gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -1 Query: 115 IVGILGDQQESKEQINTQKLSKIDLPGSEALASPKKSESTEEAQEN 160 I+ + GDQ++ K+Q QKL+ ++ P+KS + + N Sbjct: 92123 IIDVDGDQRQPKQQQQQQKLTAKKRKSTDTQTPPRKSPAKSSSSSN 91986 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/62 (20%), Positives = 28/62 (45%) Frame = +1 Query: 100 PRARKFPTVEEVYDRIVGILGDQQESKEQINTQKLSKIDLPGSEALASPKKSESTEEAQE 159 P +K P +++ + E +E S+ +LP + + PKK S +++ + Sbjct: 3146635 PSKKKKPAAASSKKKVIQQQEESSEEEESEEESSSSEEELPKPKPSSQPKKQSSHQQSNK 3146814 Query: 160 NE 161 N+ Sbjct: 3146815 NQ 3146820 Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa Posted date: Sep 29, 2011 10:07 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.308 0.127 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,087,598 Number of Sequences: 25 Number of extensions: 31404 Number of successful extensions: 98 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 11 length of query: 249 length of database: 10,339,736 effective HSP length: 97 effective length of query: 152 effective length of database: 10,337,311 effective search space: 1571271272 effective search space used: 1571271272 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 59 (27.3 bits)