TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000041_1.0 # Protein # Selenoprotein H1 (SelH1) # Drosophila melanogaster # Complete (249 letters) Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_35 31 0.97 contig_10 30 2.2 contig_34 28 6.3 contig_04 28 8.2 >contig_35 Length = 2113966 Score = 30.8 bits (68), Expect = 0.97 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +3 Query: 79 SAGGMGKQEQVALWSGLKRGPPRAR---KFPTVEEVYDRI--VGILGDQQESKEQINTQK 133 + G+G +E+ A SGL R PP + P I G+ Q +K Q Q+ Sbjct: 1933857 ATSGVGAEEEEAGGSGLPRRPPAISTGVQSPVTSHQSSPISKAGVQVPQPRTKMQQQQQQ 1934036 Query: 134 LSKIDLPGSEALASPKKSESTEEAQENE 161 ++ + G A+ASP + + +E++ Sbjct: 1934037 QTQQSINGGSAVASPADASFSSPEKESD 1934120 >contig_10 Length = 558170 Score = 29.6 bits (65), Expect = 2.2 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 9/46 (19%) Frame = +1 Query: 70 RRGAFELSLSAGGMGKQEQVALWSGLKRG---------PPRARKFP 106 RRG E+S SA G G+Q + W G ++G P RAR P Sbjct: 123766 RRGGEEVSRSAVGKGEQHRRR*WDGKRKGVGRRTGKLQPQRARHSP 123903 >contig_34 Length = 1750858 Score = 28.1 bits (61), Expect = 6.3 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 1 MPPKRNKKAEAPIAERDAGEELDPNAPVLYVEHCRSURVF 40 +PP+R + EA + ++ GE+ + +A HCR R+F Sbjct: 593293 LPPRRLRSPEAALIKQQGGEKSE*HARRHTQLHCRVTRLF 593174 >contig_04 Length = 479467 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -1 Query: 3 PKRNKKAEAPIAERDAGEELDPNAPVLYVEH---CRSUR 38 P+R + AE DAGEE+ P P VE CR+ R Sbjct: 413587 PRRRRLRRRCSAEDDAGEEVGPPPPTEEVEEDGVCRTTR 413471 Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa Posted date: Oct 4, 2011 6:44 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.308 0.127 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,015,415 Number of Sequences: 36 Number of extensions: 122232 Number of successful extensions: 445 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 427 Number of HSP's gapped (non-prelim): 35 length of query: 249 length of database: 10,814,999 effective HSP length: 98 effective length of query: 151 effective length of database: 10,811,471 effective search space: 1632532121 effective search space used: 1632532121 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 59 (27.3 bits)