T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:3 sec.
SCORE=89
*
 BAD AVG GOOD
*
Cf_Contig765_su   :  93
gi|93569092|gb|   :  91
gi|328864870|gb   :  91
scaffold_21_sub   :  89
gi|340501239|gb   :  67
contig_36_subse   :  93
Lt_contig6185_s   :  93
PHYCAscaffold_4   :  91
Contig2813_subs   :  82
supercont1.927_   :  91
TcIL3000_10_v2.   :  91
SPS2.HUMAN.gi|1   :  91
cons              :  89

Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   G--------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ---------------------------------------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   G--------------------------------------------
Contig2813_subs   ---------------------------------------------
supercont1.927_   ---------------------------------------------
TcIL3000_10_v2.   ---------------------------------------------
SPS2.HUMAN.gi|1   MAEASATGACGEAMAAAEGSSGPAGLTLGRSFSNYRPFEPQALGL

cons                                                           


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   ---------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ---------------------------------------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------------------------------
Contig2813_subs   ---------------------------------------------
supercont1.927_   ---------------------------------------------
TcIL3000_10_v2.   ---------------------------------------------
SPS2.HUMAN.gi|1   SPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLV

cons                                                           


Cf_Contig765_su   ----------------------------------------ALFLV
gi|93569092|gb|   --------------------------IGYDCSISQTKFP-DIVMI
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   -----------------------------DCSIRETR-Q-GHYVI
gi|340501239|gb   ------------------------------------------KLI
contig_36_subse   ----------------------------------------ALFLV
Lt_contig6185_s   ----------------------------------------ALFLV
PHYCAscaffold_4   ----------------------------MDSSVVKISHGTDLYLV
Contig2813_subs   -------------------------------------------KI
supercont1.927_   ----------------------------------------GVVMV
TcIL3000_10_v2.   -----------------------------------------LYMV
SPS2.HUMAN.gi|1   GGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLV

cons                                                           


Cf_Contig765_su   STTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAA
gi|93569092|gb|   QTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLAC
gi|328864870|gb   ----FFFPNCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAG
scaffold_21_sub   STTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCDFVLMLLAA
gi|340501239|gb   STIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDIDTVLMVLAV
contig_36_subse   STTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAA
Lt_contig6185_s   STTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAA
PHYCAscaffold_4   STTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGV
Contig2813_subs   ITVDFFTPVVDDAYTFGAIAAANSLSDVYAMGISSINRKTFISMI
supercont1.927_   STTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILAS
TcIL3000_10_v2.   STTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAA
SPS2.HUMAN.gi|1   QTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSV

cons                  ** *   ..:  * *...* *** :: *    :   ::   


Cf_Contig765_su   STDMDEDERLVTT-REIMRGFAERARLAATSVTGGQTVMNPWPLI
gi|93569092|gb|   STDMTAEQRQWSS-KLMIQGFNDQAICAGSKVSGGQTVKNPWPIV
gi|328864870|gb   STDMTPEQRTWST-RGMINGFNDNAKIAGTNITGGQTVKNPWPII
scaffold_21_sub   SLDMTPQDRTICT-NLMVRGFRDACTEAETTITGGQTVLNPWAII
gi|340501239|gb   SNKMNAQK-EIVT-SL-MIGFDECAV--GAYVLGG-TIINPWPII
contig_36_subse   STEMDEHERLITT-REIMKGFAERARLATTTVTGGQTVMNPWPLI
Lt_contig6185_s   STEMDEHERLITT-REIMKGFAERAHLATTTVTGGQTVMNPWPLI
PHYCAscaffold_4   CRDMSEKQRDVVT-TQMIRGFNDLARQAHTNVTGGQTVMNPWPIV
Contig2813_subs   SISAIS--REESSRPILAKGAYDKAAEAGVSILGGHTIDDSEPKF
supercont1.927_   STQIPASYRTIVT-VEMVRGFNDWCKKAGTKVTGGQSVMNPWPIL
TcIL3000_10_v2.   STDMDKTERDICT-REMMKGFVDHVRLAGSDVTGGQTVMNPWPLI
SPS2.HUMAN.gi|1   SQSMSEEEREKVT-PLMVKGFRDAAEEGGTAVTGGQTVVNPWIII

cons              . .         :      *  :        : ** :: :.   .


Cf_Contig765_su   GGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLM
gi|93569092|gb|   GGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCVNFHQWLS
gi|328864870|gb   GGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCANAHQWLQ
scaffold_21_sub   GGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAVNVHEWRK
gi|340501239|gb   GGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAVNLKWYTK
contig_36_subse   GGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLL
Lt_contig6185_s   GGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLL
PHYCAscaffold_4   GGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAVNLFQWKK
Contig2813_subs   GLSVTGIVHPHKIWKNNTA-RDGDAIILTKRIGTGICTTAMKRNM
supercont1.927_   GGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAVNLHQWLD
TcIL3000_10_v2.   GGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAVNLKQWIH
SPS2.HUMAN.gi|1   GGVATVVCQPNEFIMPDSA-VVGDVLVLTKPLGTQVAVNAHQWLD

cons              *     :    .          ** ::*** :*  :. .      


Cf_Contig765_su   R-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE----GARL
gi|93569092|gb|   K-PER--WEKINTITNAEECEQVFNYATLSMARLNRV----GARL
gi|328864870|gb   GFPEK--WERITGVVTREQIIECWAYAVNSMARLNRT----GARM
scaffold_21_sub   R-HEK--KAKNGDTTGDKKSEIMMHAAVRSMSKLNRF----GSKL
gi|340501239|gb   -DI-KDKLEKIG-FISKE-VD-AFLKAEMEMGTLSILPSFKNIRL
contig_36_subse   R-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE----GARL
Lt_contig6185_s   R-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE----GARL
PHYCAscaffold_4   K-PER--WQRVESIVTPEDADVAFQMASESMSRLNLN----AAKM
Contig2813_subs   ASPA--TAQA-AIKTMSELIPATAQEVIKTMSELNKY----AAEV
supercont1.927_   Q-PKW--WDQVKHVIDAETVIRAYNVASASMKRLNMV----GAQL
TcIL3000_10_v2.   R-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE----AARL
SPS2.HUMAN.gi|1   N-PER--WNKVKMVVSREEVELAYQEAMFNMATLNRT----AAGL

cons                               .        .   *  *.         :


Cf_Contig765_su   MLKHGAHG-ATDVTGFGILGHANNFGAA-----------------
gi|93569092|gb|   MKKYNAHA-ATDVTGFGILGHSTNLAQNQLLP-IRFEIHTLPIIK
gi|328864870|gb   MMKHGAHA-CTDVTGFGLLGHSMNLAKNQNAA-VYFEIDTLPIMQ
scaffold_21_sub   MTKHNAHA-GTDVTGFGLLGHAQNLMDNQIAK-VGIELHTFPCIA
gi|340501239|gb   MHALMQDSELRDILSFW-----QKYRKNKISLIIYLQLN------
contig_36_subse   MRKHGAHG-ATDVTGFGILGHANNFGAA-----------------
Lt_contig6185_s   MRKHGAHG-ATDVTGFGILGHANNFGAA-----------------
PHYCAscaffold_4   MHKYGAHS-ATDVTGFGIVAHARNQAKSQLGD-VSFEIHTLPIIK
Contig2813_subs   LLKYKVSS-GADVT-FGLAGHMWEMAKSSDLS-VHLYFDQIPL--
supercont1.927_   MHKHNARA-ATDVTGFGILGHANNLAQAQKAK-LTLRIDSLPGTI
TcIL3000_10_v2.   MCVHKAHG-ATDVTGFGIIGHATNLGGAQEAK-LCLVLNSLPMYK
SPS2.HUMAN.gi|1   MHTFNAHA-ATDITGFGILGHSQNLAKQQRNE-VSFVIHNLPIIA

cons                   .   *:  *       :                     


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   HMKKLEDHLNHPFKLLKGTSAETSGGLLISMSR-ENAEAFCKE--
gi|328864870|gb   GMVEIDATLNYNYNLLKGMSAETSGGLLVALPA-DKAQAFIDDM-
scaffold_21_sub   NTLKINDNI-MNFRLRDGYSAETSGGLMISMTE-ADAIAYCAEL-
gi|340501239|gb   -MWQVTEKR-EISNLNKGVRKLVEVYLFVKKI-RQ-RNLFRK---
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   NMAKVNEAIGNSFKLLDGFAAETSGGLLLCLPA-ENADAYIKELR
Contig2813_subs   ---------------------------------------------
supercont1.927_   AVDRVLKGG-ALFNLATGYSAETSGGLLMCMAP-ADADAFCRAIH
TcIL3000_10_v2.   GAVKASRLMDDKFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLR
SPS2.HUMAN.gi|1   KMAAVSKA-SGRFGLLQGTSAETSGGLLICLPR-EQAARFCSEIK

cons                                                           


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   ---------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ---------------------------------------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   E---LDGKPAWVVGRVVAGSKDAYIAPDSKVIE------------
Contig2813_subs   ---------------------------------------------
supercont1.927_   A---EEGWKAFVVGQVIEGDNTACLSDTVEFI-------------
TcIL3000_10_v2.   D---ADGEPAWVVG-------------------------------
SPS2.HUMAN.gi|1   SSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLA

cons                                                           


Cf_Contig765_su   -----------Q
gi|93569092|gb|   -----------I
gi|328864870|gb   -----------Q
scaffold_21_sub   -----------R
gi|340501239|gb   ----------KI
contig_36_subse   -----------Q
Lt_contig6185_s   -----------Q
PHYCAscaffold_4   ---------VTP
Contig2813_subs   -----------I
supercont1.927_   ----------EV
TcIL3000_10_v2.   ----------RV
SPS2.HUMAN.gi|1   PDSSNASSEPSS

cons