T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:3 sec.
SCORE=89
*
BAD AVG GOOD
*
Cf_Contig765_su : 93
gi|93569092|gb| : 91
gi|328864870|gb : 91
scaffold_21_sub : 89
gi|340501239|gb : 67
contig_36_subse : 93
Lt_contig6185_s : 93
PHYCAscaffold_4 : 91
Contig2813_subs : 82
supercont1.927_ : 91
TcIL3000_10_v2. : 91
SPS2.HUMAN.gi|1 : 91
cons : 89
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| G--------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ---------------------------------------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 G--------------------------------------------
Contig2813_subs ---------------------------------------------
supercont1.927_ ---------------------------------------------
TcIL3000_10_v2. ---------------------------------------------
SPS2.HUMAN.gi|1 MAEASATGACGEAMAAAEGSSGPAGLTLGRSFSNYRPFEPQALGL
cons
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| ---------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ---------------------------------------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------------------------------
Contig2813_subs ---------------------------------------------
supercont1.927_ ---------------------------------------------
TcIL3000_10_v2. ---------------------------------------------
SPS2.HUMAN.gi|1 SPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLV
cons
Cf_Contig765_su ----------------------------------------ALFLV
gi|93569092|gb| --------------------------IGYDCSISQTKFP-DIVMI
gi|328864870|gb ---------------------------------------------
scaffold_21_sub -----------------------------DCSIRETR-Q-GHYVI
gi|340501239|gb ------------------------------------------KLI
contig_36_subse ----------------------------------------ALFLV
Lt_contig6185_s ----------------------------------------ALFLV
PHYCAscaffold_4 ----------------------------MDSSVVKISHGTDLYLV
Contig2813_subs -------------------------------------------KI
supercont1.927_ ----------------------------------------GVVMV
TcIL3000_10_v2. -----------------------------------------LYMV
SPS2.HUMAN.gi|1 GGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLV
cons
Cf_Contig765_su STTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAA
gi|93569092|gb| QTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLAC
gi|328864870|gb ----FFFPNCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAG
scaffold_21_sub STTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCDFVLMLLAA
gi|340501239|gb STIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDIDTVLMVLAV
contig_36_subse STTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAA
Lt_contig6185_s STTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAA
PHYCAscaffold_4 STTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGV
Contig2813_subs ITVDFFTPVVDDAYTFGAIAAANSLSDVYAMGISSINRKTFISMI
supercont1.927_ STTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILAS
TcIL3000_10_v2. STTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAA
SPS2.HUMAN.gi|1 QTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSV
cons ** * ..: * *...* *** :: * : ::
Cf_Contig765_su STDMDEDERLVTT-REIMRGFAERARLAATSVTGGQTVMNPWPLI
gi|93569092|gb| STDMTAEQRQWSS-KLMIQGFNDQAICAGSKVSGGQTVKNPWPIV
gi|328864870|gb STDMTPEQRTWST-RGMINGFNDNAKIAGTNITGGQTVKNPWPII
scaffold_21_sub SLDMTPQDRTICT-NLMVRGFRDACTEAETTITGGQTVLNPWAII
gi|340501239|gb SNKMNAQK-EIVT-SL-MIGFDECAV--GAYVLGG-TIINPWPII
contig_36_subse STEMDEHERLITT-REIMKGFAERARLATTTVTGGQTVMNPWPLI
Lt_contig6185_s STEMDEHERLITT-REIMKGFAERAHLATTTVTGGQTVMNPWPLI
PHYCAscaffold_4 CRDMSEKQRDVVT-TQMIRGFNDLARQAHTNVTGGQTVMNPWPIV
Contig2813_subs SISAIS--REESSRPILAKGAYDKAAEAGVSILGGHTIDDSEPKF
supercont1.927_ STQIPASYRTIVT-VEMVRGFNDWCKKAGTKVTGGQSVMNPWPIL
TcIL3000_10_v2. STDMDKTERDICT-REMMKGFVDHVRLAGSDVTGGQTVMNPWPLI
SPS2.HUMAN.gi|1 SQSMSEEEREKVT-PLMVKGFRDAAEEGGTAVTGGQTVVNPWIII
cons . . : * : : ** :: :. .
Cf_Contig765_su GGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLM
gi|93569092|gb| GGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCVNFHQWLS
gi|328864870|gb GGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCANAHQWLQ
scaffold_21_sub GGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAVNVHEWRK
gi|340501239|gb GGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAVNLKWYTK
contig_36_subse GGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLL
Lt_contig6185_s GGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLL
PHYCAscaffold_4 GGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAVNLFQWKK
Contig2813_subs GLSVTGIVHPHKIWKNNTA-RDGDAIILTKRIGTGICTTAMKRNM
supercont1.927_ GGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAVNLHQWLD
TcIL3000_10_v2. GGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAVNLKQWIH
SPS2.HUMAN.gi|1 GGVATVVCQPNEFIMPDSA-VVGDVLVLTKPLGTQVAVNAHQWLD
cons * : . ** ::*** :* :. .
Cf_Contig765_su R-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE----GARL
gi|93569092|gb| K-PER--WEKINTITNAEECEQVFNYATLSMARLNRV----GARL
gi|328864870|gb GFPEK--WERITGVVTREQIIECWAYAVNSMARLNRT----GARM
scaffold_21_sub R-HEK--KAKNGDTTGDKKSEIMMHAAVRSMSKLNRF----GSKL
gi|340501239|gb -DI-KDKLEKIG-FISKE-VD-AFLKAEMEMGTLSILPSFKNIRL
contig_36_subse R-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE----GARL
Lt_contig6185_s R-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE----GARL
PHYCAscaffold_4 K-PER--WQRVESIVTPEDADVAFQMASESMSRLNLN----AAKM
Contig2813_subs ASPA--TAQA-AIKTMSELIPATAQEVIKTMSELNKY----AAEV
supercont1.927_ Q-PKW--WDQVKHVIDAETVIRAYNVASASMKRLNMV----GAQL
TcIL3000_10_v2. R-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE----AARL
SPS2.HUMAN.gi|1 N-PER--WNKVKMVVSREEVELAYQEAMFNMATLNRT----AAGL
cons . . * *. :
Cf_Contig765_su MLKHGAHG-ATDVTGFGILGHANNFGAA-----------------
gi|93569092|gb| MKKYNAHA-ATDVTGFGILGHSTNLAQNQLLP-IRFEIHTLPIIK
gi|328864870|gb MMKHGAHA-CTDVTGFGLLGHSMNLAKNQNAA-VYFEIDTLPIMQ
scaffold_21_sub MTKHNAHA-GTDVTGFGLLGHAQNLMDNQIAK-VGIELHTFPCIA
gi|340501239|gb MHALMQDSELRDILSFW-----QKYRKNKISLIIYLQLN------
contig_36_subse MRKHGAHG-ATDVTGFGILGHANNFGAA-----------------
Lt_contig6185_s MRKHGAHG-ATDVTGFGILGHANNFGAA-----------------
PHYCAscaffold_4 MHKYGAHS-ATDVTGFGIVAHARNQAKSQLGD-VSFEIHTLPIIK
Contig2813_subs LLKYKVSS-GADVT-FGLAGHMWEMAKSSDLS-VHLYFDQIPL--
supercont1.927_ MHKHNARA-ATDVTGFGILGHANNLAQAQKAK-LTLRIDSLPGTI
TcIL3000_10_v2. MCVHKAHG-ATDVTGFGIIGHATNLGGAQEAK-LCLVLNSLPMYK
SPS2.HUMAN.gi|1 MHTFNAHA-ATDITGFGILGHSQNLAKQQRNE-VSFVIHNLPIIA
cons : . *: * :
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| HMKKLEDHLNHPFKLLKGTSAETSGGLLISMSR-ENAEAFCKE--
gi|328864870|gb GMVEIDATLNYNYNLLKGMSAETSGGLLVALPA-DKAQAFIDDM-
scaffold_21_sub NTLKINDNI-MNFRLRDGYSAETSGGLMISMTE-ADAIAYCAEL-
gi|340501239|gb -MWQVTEKR-EISNLNKGVRKLVEVYLFVKKI-RQ-RNLFRK---
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 NMAKVNEAIGNSFKLLDGFAAETSGGLLLCLPA-ENADAYIKELR
Contig2813_subs ---------------------------------------------
supercont1.927_ AVDRVLKGG-ALFNLATGYSAETSGGLLMCMAP-ADADAFCRAIH
TcIL3000_10_v2. GAVKASRLMDDKFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLR
SPS2.HUMAN.gi|1 KMAAVSKA-SGRFGLLQGTSAETSGGLLICLPR-EQAARFCSEIK
cons
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| ---------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ---------------------------------------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 E---LDGKPAWVVGRVVAGSKDAYIAPDSKVIE------------
Contig2813_subs ---------------------------------------------
supercont1.927_ A---EEGWKAFVVGQVIEGDNTACLSDTVEFI-------------
TcIL3000_10_v2. D---ADGEPAWVVG-------------------------------
SPS2.HUMAN.gi|1 SSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLA
cons
Cf_Contig765_su -----------Q
gi|93569092|gb| -----------I
gi|328864870|gb -----------Q
scaffold_21_sub -----------R
gi|340501239|gb ----------KI
contig_36_subse -----------Q
Lt_contig6185_s -----------Q
PHYCAscaffold_4 ---------VTP
Contig2813_subs -----------I
supercont1.927_ ----------EV
TcIL3000_10_v2. ----------RV
SPS2.HUMAN.gi|1 PDSSNASSEPSS
cons