T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:4 sec.
SCORE=90
*
BAD AVG GOOD
*
Cf_Contig765_su : 91
gi|93569092|gb| : 92
gi|328864870|gb : 93
scaffold_21_sub : 90
gi|340501239|gb : 66
contig_36_subse : 94
Lt_contig6185_s : 92
PHYCAscaffold_4 : 92
supercont1.927_ : 92
TcIL3000_10_v2. : 92
SPS1.HUMAN.gi|1 : 92
cons : 90
Cf_Contig765_su ---RPRFDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAV
gi|93569092|gb| ---------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ------FDPTSVGLPEGWSLTDFSDLKG-ACKIPQNELQDMLSSL
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------------------------------
supercont1.927_ ----HTWDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESI
TcIL3000_10_v2. ---------------------------------------------
SPS1.HUMAN.gi|1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL
cons
Cf_Contig765_su ATSPGQK------------DVGMDCSIVPLHHTN----------G
gi|93569092|gb| -------------------GIGYDCSISQTKF-------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ALGDDTIDGNNLGTADG--RIALDCSIRETR--------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------GMDSSVVKISH-------------
supercont1.927_ GSG----------------DIRMDCSILDTSIPGMYLLNTNCYRQ
TcIL3000_10_v2. ---------------------------------------------
SPS1.HUMAN.gi|1 QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRH-------------
cons
Cf_Contig765_su KGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCD
gi|93569092|gb| --PDIVMIQTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCD
gi|328864870|gb ------------FFFPNCDDPYLMGKIACANVLSDLYSFGIADCD
scaffold_21_sub --QGHYVISTTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCD
gi|340501239|gb -----KLISTIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDID
contig_36_subse ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
Lt_contig6185_s ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
PHYCAscaffold_4 -GTDLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVD
supercont1.927_ LSAGVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVD
TcIL3000_10_v2. ----LYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCD
SPS1.HUMAN.gi|1 --GGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
cons :::* .*: *:*...***** :: * *
Cf_Contig765_su TMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTGGQTV
gi|93569092|gb| NMLMLLACSTDMTAEQRQWSSKLMIQGFNDQAICAGSKVSGGQTV
gi|328864870|gb NMLMILAGSTDMTPEQRTWSTRGMINGFNDNAKIAGTNITGGQTV
scaffold_21_sub FVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAETTITGGQTV
gi|340501239|gb TVLMVLAVSNKMNAQKE-IVTS-LMIGFDECAV--GAYVLGG-TI
contig_36_subse TMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTV
Lt_contig6185_s TMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTGGQTV
PHYCAscaffold_4 TMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQAHTNVTGGQTV
supercont1.927_ NMLMILASSTQIPASYRTIVTVEMVRGFNDWCKKAGTKVTGGQSV
TcIL3000_10_v2. TVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVTGGQTV
SPS1.HUMAN.gi|1 NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTV
cons :**:*. . .: . :: ** : : : ** ::
Cf_Contig765_su MNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAM
gi|93569092|gb| KNPWPIVGGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCV
gi|328864870|gb KNPWPIIGGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCA
scaffold_21_sub LNPWAIIGGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAV
gi|340501239|gb INPWPIIGGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAV
contig_36_subse MNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAV
Lt_contig6185_s MNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAV
PHYCAscaffold_4 MNPWPIVGGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAV
supercont1.927_ MNPWPILGGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAV
TcIL3000_10_v2. MNPWPLIGGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAV
SPS1.HUMAN.gi|1 LNPWIVLGGVATTVCQPNEFIMPDNA-VPGDVLVLTKPLGTQVAV
cons *** ::**:. :: : : . . **:::****:* :.
Cf_Contig765_su NLKQWLMR-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE-
gi|93569092|gb| NFHQWLSK-PER--WEKINTITNAEECEQVFNYATLSMARLNRV-
gi|328864870|gb NAHQWLQGFPEK--WERITGVVTREQIIECWAYAVNSMARLNRT-
scaffold_21_sub NVHEWRKR-HEK--KAKNGDTTGDKKSEIMMHAAVRSMSKLNRF-
gi|340501239|gb NLKWYTKDIKDK--LEKIGF-ISKE-V-DAFLKAEMEMGTLSILP
contig_36_subse NLKQWLLR-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE-
Lt_contig6185_s NLKQWLLR-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE-
PHYCAscaffold_4 NLFQWKKK-PER--WQRVESIVTPEDADVAFQMASESMSRLNLN-
supercont1.927_ NLHQWLDQ-PK--WWDQVKHVIDAETVIRAYNVASASMKRLNMV-
TcIL3000_10_v2. NLKQWIHR-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE-
SPS1.HUMAN.gi|1 AVHQWLDI-PEK--WNKIKLVVTQEDVELAYQEAMMNMARLNRT-
cons : . . * * *.
Cf_Contig765_su ---GARLMLKHGAHG-ATDVTGFGILGHANNFGAAQAVGSAPQSL
gi|93569092|gb| ---GARLMKKYNAHA-ATDVTGFGILGHSTNLAQNQL-----LPI
gi|328864870|gb ---GARMMMKHGAHA-CTDVTGFGLLGHSMNLAKNQN-----AAV
scaffold_21_sub ---GSKLMTKHNAHA-GTDVTGFGLLGHAQNLMDNQI-----AKV
gi|340501239|gb SFKNIRLMHALMQDSELRDI-----LSFWQKYRKNKISLI----I
contig_36_subse ---GARLMRKHGAHG-ATDVTGFGILGHANNFGAA----------
Lt_contig6185_s ---GARLMRKHGAHG-ATDVTGFGILGHANNFGAAQR------SL
PHYCAscaffold_4 ---AAKMMHKYGAHS-ATDVTGFGIVAHARNQAKSQL-----GDV
supercont1.927_ ---GAQLMHKHNARA-ATDVTGFGILGHANNLAQAQK-----AKL
TcIL3000_10_v2. ---AARLMCVHKAHG-ATDVTGFGIIGHATNLGGAQE-----AKL
SPS1.HUMAN.gi|1 ---AAGLMHTFNAHA-ATDITGFGILGHAQNLAKQQR-----NEV
cons :* . *: :.. :
Cf_Contig765_su CLVLDRLPMLKTAVAASRLMQ--DKYRLFEGYSAETSGGLLVALA
gi|93569092|gb| RFEIHTLPIIKHMKKLEDHLN--HPFKLLKGTSAETSGGLLISMS
gi|328864870|gb YFEIDTLPIMQGMVEIDATLN--YNYNLLKGMSAETSGGLLVALP
scaffold_21_sub GIELHTFPCIANTLKINDNIM---NFRLRDGYSAETSGGLMISMT
gi|340501239|gb YLQLNMWQVTE-KREIS---------NLNKGVRKLVE--------
contig_36_subse ---------------------------------------------
Lt_contig6185_s CLVLERLPMFKTAVAASKRMN--DKYRLLEGYSPETSGGLLVAFP
PHYCAscaffold_4 SFEIHTLPIIKNMAKVNEAIG--NSFKLLDGFAAETSGGLLLCLP
supercont1.927_ TLRIDSLPVIKGTIAVDRVLKGGALFNLATGYSAETSGGLLMCMA
TcIL3000_10_v2. CLVLNSLPMYKGAVKASRLMD--DKFRLFEGYSAETSGGLLVAFE
SPS1.HUMAN.gi|1 SFVIHNLPVLAKMAAVSKACG--NMFGLMHGTCPETSGGLLICLP
cons
Cf_Contig765_su SREAAEAFQKELEEA--DGGCPSWIVGRV----------------
gi|93569092|gb| RE-NAEAFCKE----------------------------------
gi|328864870|gb AD-KAQAFIDDM---------------------------------
scaffold_21_sub EA-DAIAYCAEL---------------------------------
gi|340501239|gb ----VYLFVKKIRQRN-----------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s NTTAAEAFCAELTEV--DDGCPSWIVGHV----------------
PHYCAscaffold_4 AE-NADAYIKELREL---DGKPAWVVGRVVAGSKDAYIAPDSKVI
supercont1.927_ PA-DADAFCRAIHAE---EGWKAFVVGQVIEGDNTACLSDTVEFI
TcIL3000_10_v2. DVTTAERYIRDLRDA---DGEPAWVVGR-----------------
SPS1.HUMAN.gi|1 RE-QAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRII
cons
Cf_Contig765_su ------------------E
gi|93569092|gb| ------------------I
gi|328864870|gb ------------------Q
scaffold_21_sub ------------------R
gi|340501239|gb ---------------LFRK
contig_36_subse ------------------Q
Lt_contig6185_s ------------------E
PHYCAscaffold_4 EV--------------TPE
supercont1.927_ -----------------EV
TcIL3000_10_v2. ------------------V
SPS1.HUMAN.gi|1 EVAPQVATQNVNPTPGATS
cons