T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=90
*
 BAD AVG GOOD
*
Cf_Contig765_su   :  91
gi|93569092|gb|   :  92
gi|328864870|gb   :  93
scaffold_21_sub   :  90
gi|340501239|gb   :  66
contig_36_subse   :  94
Lt_contig6185_s   :  92
PHYCAscaffold_4   :  92
supercont1.927_   :  92
TcIL3000_10_v2.   :  92
SPS1.HUMAN.gi|1   :  92
cons              :  90

Cf_Contig765_su   ---RPRFDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAV
gi|93569092|gb|   ---------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ------FDPTSVGLPEGWSLTDFSDLKG-ACKIPQNELQDMLSSL
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------------------------------
supercont1.927_   ----HTWDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESI
TcIL3000_10_v2.   ---------------------------------------------
SPS1.HUMAN.gi|1   MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL

cons                                                           


Cf_Contig765_su   ATSPGQK------------DVGMDCSIVPLHHTN----------G
gi|93569092|gb|   -------------------GIGYDCSISQTKF-------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ALGDDTIDGNNLGTADG--RIALDCSIRETR--------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------GMDSSVVKISH-------------
supercont1.927_   GSG----------------DIRMDCSILDTSIPGMYLLNTNCYRQ
TcIL3000_10_v2.   ---------------------------------------------
SPS1.HUMAN.gi|1   QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRH-------------

cons                                                           


Cf_Contig765_su   KGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCD
gi|93569092|gb|   --PDIVMIQTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCD
gi|328864870|gb   ------------FFFPNCDDPYLMGKIACANVLSDLYSFGIADCD
scaffold_21_sub   --QGHYVISTTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCD
gi|340501239|gb   -----KLISTIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDID
contig_36_subse   ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
Lt_contig6185_s   ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
PHYCAscaffold_4   -GTDLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVD
supercont1.927_   LSAGVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVD
TcIL3000_10_v2.   ----LYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCD
SPS1.HUMAN.gi|1   --GGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD

cons                          :::*   .*:  *:*...***** :: *    *


Cf_Contig765_su   TMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTGGQTV
gi|93569092|gb|   NMLMLLACSTDMTAEQRQWSSKLMIQGFNDQAICAGSKVSGGQTV
gi|328864870|gb   NMLMILAGSTDMTPEQRTWSTRGMINGFNDNAKIAGTNITGGQTV
scaffold_21_sub   FVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAETTITGGQTV
gi|340501239|gb   TVLMVLAVSNKMNAQKE-IVTS-LMIGFDECAV--GAYVLGG-TI
contig_36_subse   TMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTV
Lt_contig6185_s   TMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTGGQTV
PHYCAscaffold_4   TMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQAHTNVTGGQTV
supercont1.927_   NMLMILASSTQIPASYRTIVTVEMVRGFNDWCKKAGTKVTGGQSV
TcIL3000_10_v2.   TVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVTGGQTV
SPS1.HUMAN.gi|1   NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTV

cons               :**:*. . .:    .      :: ** :      : : ** ::


Cf_Contig765_su   MNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAM
gi|93569092|gb|   KNPWPIVGGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCV
gi|328864870|gb   KNPWPIIGGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCA
scaffold_21_sub   LNPWAIIGGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAV
gi|340501239|gb   INPWPIIGGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAV
contig_36_subse   MNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAV
Lt_contig6185_s   MNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAV
PHYCAscaffold_4   MNPWPIVGGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAV
supercont1.927_   MNPWPILGGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAV
TcIL3000_10_v2.   MNPWPLIGGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAV
SPS1.HUMAN.gi|1   LNPWIVLGGVATTVCQPNEFIMPDNA-VPGDVLVLTKPLGTQVAV

cons               *** ::**:. ::    : : . .    **:::****:*  :. 


Cf_Contig765_su   NLKQWLMR-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE-
gi|93569092|gb|   NFHQWLSK-PER--WEKINTITNAEECEQVFNYATLSMARLNRV-
gi|328864870|gb   NAHQWLQGFPEK--WERITGVVTREQIIECWAYAVNSMARLNRT-
scaffold_21_sub   NVHEWRKR-HEK--KAKNGDTTGDKKSEIMMHAAVRSMSKLNRF-
gi|340501239|gb   NLKWYTKDIKDK--LEKIGF-ISKE-V-DAFLKAEMEMGTLSILP
contig_36_subse   NLKQWLLR-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE-
Lt_contig6185_s   NLKQWLLR-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE-
PHYCAscaffold_4   NLFQWKKK-PER--WQRVESIVTPEDADVAFQMASESMSRLNLN-
supercont1.927_   NLHQWLDQ-PK--WWDQVKHVIDAETVIRAYNVASASMKRLNMV-
TcIL3000_10_v2.   NLKQWIHR-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE-
SPS1.HUMAN.gi|1   AVHQWLDI-PEK--WNKIKLVVTQEDVELAYQEAMMNMARLNRT-

cons                  :     .             .        *   *  *.   


Cf_Contig765_su   ---GARLMLKHGAHG-ATDVTGFGILGHANNFGAAQAVGSAPQSL
gi|93569092|gb|   ---GARLMKKYNAHA-ATDVTGFGILGHSTNLAQNQL-----LPI
gi|328864870|gb   ---GARMMMKHGAHA-CTDVTGFGLLGHSMNLAKNQN-----AAV
scaffold_21_sub   ---GSKLMTKHNAHA-GTDVTGFGLLGHAQNLMDNQI-----AKV
gi|340501239|gb   SFKNIRLMHALMQDSELRDI-----LSFWQKYRKNKISLI----I
contig_36_subse   ---GARLMRKHGAHG-ATDVTGFGILGHANNFGAA----------
Lt_contig6185_s   ---GARLMRKHGAHG-ATDVTGFGILGHANNFGAAQR------SL
PHYCAscaffold_4   ---AAKMMHKYGAHS-ATDVTGFGIVAHARNQAKSQL-----GDV
supercont1.927_   ---GAQLMHKHNARA-ATDVTGFGILGHANNLAQAQK-----AKL
TcIL3000_10_v2.   ---AARLMCVHKAHG-ATDVTGFGIIGHATNLGGAQE-----AKL
SPS1.HUMAN.gi|1   ---AAGLMHTFNAHA-ATDITGFGILGHAQNLAKQQR-----NEV

cons                    :*      .   *:     :..  :              


Cf_Contig765_su   CLVLDRLPMLKTAVAASRLMQ--DKYRLFEGYSAETSGGLLVALA
gi|93569092|gb|   RFEIHTLPIIKHMKKLEDHLN--HPFKLLKGTSAETSGGLLISMS
gi|328864870|gb   YFEIDTLPIMQGMVEIDATLN--YNYNLLKGMSAETSGGLLVALP
scaffold_21_sub   GIELHTFPCIANTLKINDNIM---NFRLRDGYSAETSGGLMISMT
gi|340501239|gb   YLQLNMWQVTE-KREIS---------NLNKGVRKLVE--------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   CLVLERLPMFKTAVAASKRMN--DKYRLLEGYSPETSGGLLVAFP
PHYCAscaffold_4   SFEIHTLPIIKNMAKVNEAIG--NSFKLLDGFAAETSGGLLLCLP
supercont1.927_   TLRIDSLPVIKGTIAVDRVLKGGALFNLATGYSAETSGGLLMCMA
TcIL3000_10_v2.   CLVLNSLPMYKGAVKASRLMD--DKFRLFEGYSAETSGGLLVAFE
SPS1.HUMAN.gi|1   SFVIHNLPVLAKMAAVSKACG--NMFGLMHGTCPETSGGLLICLP

cons                                                           


Cf_Contig765_su   SREAAEAFQKELEEA--DGGCPSWIVGRV----------------
gi|93569092|gb|   RE-NAEAFCKE----------------------------------
gi|328864870|gb   AD-KAQAFIDDM---------------------------------
scaffold_21_sub   EA-DAIAYCAEL---------------------------------
gi|340501239|gb   ----VYLFVKKIRQRN-----------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   NTTAAEAFCAELTEV--DDGCPSWIVGHV----------------
PHYCAscaffold_4   AE-NADAYIKELREL---DGKPAWVVGRVVAGSKDAYIAPDSKVI
supercont1.927_   PA-DADAFCRAIHAE---EGWKAFVVGQVIEGDNTACLSDTVEFI
TcIL3000_10_v2.   DVTTAERYIRDLRDA---DGEPAWVVGR-----------------
SPS1.HUMAN.gi|1   RE-QAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRII

cons                                                           


Cf_Contig765_su   ------------------E
gi|93569092|gb|   ------------------I
gi|328864870|gb   ------------------Q
scaffold_21_sub   ------------------R
gi|340501239|gb   ---------------LFRK
contig_36_subse   ------------------Q
Lt_contig6185_s   ------------------E
PHYCAscaffold_4   EV--------------TPE
supercont1.927_   -----------------EV
TcIL3000_10_v2.   ------------------V
SPS1.HUMAN.gi|1   EVAPQVATQNVNPTPGATS

cons