T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=96
*
 BAD AVG GOOD
*
gi|328874319|gb   :  96
Contig1754_subs   :  96
supercont1.4674   :  97
PSTK.MUS.gi|117   :  96
cons              :  96

gi|328874319|gb   ---------------------------------------------
Contig1754_subs   ---------------------------------------------
supercont1.4674   ---------------------------------------------
PSTK.MUS.gi|117   MKTAAARGATRRDGQPKLGLCVLCGLPAAGKSTFARALALRLRRE

cons                                                           


gi|328874319|gb   ---------------------------------------------
Contig1754_subs   ---------------------------------------------
supercont1.4674   ---------------------------------------------
PSTK.MUS.gi|117   RGWAVGVLSYDDVLPLALPDCDGTQPRPSQWKMFRQELLKHLECF

cons                                                           


gi|328874319|gb   ---------------------------------------------
Contig1754_subs   ---------------------------------------------
supercont1.4674   ---------------------------------------------
PSTK.MUS.gi|117   LVAVISGAQMSAPPNRTEAVWEDFITCLKSQDLMIFPTALEAQPC

cons                                                           


gi|328874319|gb   ------------LILLDDNFHLKSMRYPYYRICRDFNSGFGVIYI
Contig1754_subs   -----------VFIMVDDNMFYRSMRRTLFNLARGCNAGFAQVHV
supercont1.4674   --------TRLRMILIDDNFYYRSMRKEIYQLADIMSIGYVQVWI
PSTK.MUS.gi|117   HLLAKPAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL

cons                          ::::***:. :***   :.:.   . *:  : :


gi|328874319|gb   NRDVDDCKVYNIEREKRVTGETIDKMNREFEPPNNPNIKWEFNNT
Contig1754_subs   TCPVEECIARNASRTNPVPESIIRDMAERFEVPAPTSHEWERHTI
supercont1.4674   VCDTEVAVRRDARRTGQVGAEVIQRMSARFDTPDPHGFAWEKHTI
PSTK.MUS.gi|117   DCPLETCLKRNGERSQPLPDETIQLMGRKIEKPNPEKNAWEHNSL

cons                  : .   :  *   :  . *  *  .:: *      ** :. 


gi|328874319|gb   LTNN-----------------------------------------
Contig1754_subs   QVP------------------------------------------
supercont1.4674   CIDT-----------------------------------------
PSTK.MUS.gi|117   IIQSSACSLEASLEVTGLLLTALENPIKCVEDNTEQKETDRIICS

cons                                                           


gi|328874319|gb   ------------------------N
Contig1754_subs   ------------------------S
supercont1.4674   ------------------------T
PSTK.MUS.gi|117   TNILHKADETLRRTVSQTMREAKDE

cons