T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=95
*
 BAD AVG GOOD
*
PHYCAscaffold_1   :  95
PSTK.HUMAN.gi|2   :  95
cons              :  95

PHYCAscaffold_1   ---------------------------------------------
PSTK.HUMAN.gi|2   MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQE

cons                                                           


PHYCAscaffold_1   ---------------------------------------------
PSTK.HUMAN.gi|2   QGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQELLKYLEYF

cons                                                           


PHYCAscaffold_1   ---------------------------------------------
PSTK.HUMAN.gi|2   LMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCY

cons                                                           


PHYCAscaffold_1   ----------LVLLVDDNFQYRSLRKRFFHLTAKLNCGFGVLYVD
PSTK.HUMAN.gi|2   LLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD

cons                        *.*::**** *:*:* ..::*: * . **  *::*


PHYCAscaffold_1   VPLDICRERNAGRNKREQVPSEVFERMAAAFEPPNGRQNSWEVN-
PSTK.HUMAN.gi|2   CPLETCLQRNGQRP--QALPPETIHLMRRKLEKPNPEKNAWEHNS

cons               **: * :**. *   : :*.*.:. *   :* ** .:*:** * 


PHYCAscaffold_1   ---------------------------------------------
PSTK.HUMAN.gi|2   LTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQKDTDRIIC

cons                                                           


PHYCAscaffold_1   ---------------------------------------------
PSTK.HUMAN.gi|2   STNILHKTDQTLRRIVSQTMKEAKGNQEAFSEMTFKQRWVRANHA

cons                                                           


PHYCAscaffold_1   ----------------------------------T
PSTK.HUMAN.gi|2   AIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG

cons