T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:12 sec.
SCORE=82
*
BAD AVG GOOD
*
gi|325181502|em : 76
Cf_Contig741_su : 83
gi|93569114|gb| : 83
gi|328869808|gb : 85
scaffold_30_sub : 79
gi|340502432|gb : 80
contig_34_subse : 83
Lt_contig2959_s : 82
PHYCAscaffold_1 : 78
Contig13961_sub : 97
supercont1.106_ : 82
T.congo.pschr4_ : 82
eEFsec.Human.SP : 83
cons : 82
gi|325181502|em ---------------------------------------------
Cf_Contig741_su LAAVMLNVNVGLLGHVDSGKTALAKALSRTASTAAFDKSPQSQSR
gi|93569114|gb| -----INFNIGIMGHVDSGKTSLAKALSTNLSTASLDKSPASQER
gi|328869808|gb S-SRILNINVGIMGHVDSGKTSLAKVLSTSLSTAALDKSPASQER
scaffold_30_sub -----ININVGILGHVDSGKTSLVKTLSTLLSTASLDKSKQSRQR
gi|340502432|gb ----------GVLGHIDSGKTSLSKALSKITSTASLDKNPS--ER
contig_34_subse -----LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSR
Lt_contig2959_s -----LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSR
PHYCAscaffold_1 -----LNVNVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQSQQR
Contig13961_sub -----LNVNVGILGHVDSGKTSLARAISTLLSTAALDKSPASQER
supercont1.106_ --NKMLNINVGVLGHVDSGKTSLCKVLSTVASTASFDNNPQSQAR
T.congo.pschr4_ -----VNINIGILGHVDSGKTSLAKALSLTASTAAFDKSPESQRR
eEFsec.Human.SP MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su GITLDLGFSACEVAQDDS----------DDARAVLRAANLDKVQC
gi|93569114|gb| GITLDLGFSSFQIKKDKL----------AENN-NNNNDNNNNIQI
gi|328869808|gb GITLDLGFSSFNVDVASHP--L------LSQR-SEIANHYDRVQF
scaffold_30_sub GMTLDLGFSCFFMDLPERL--KLQLQASSNNKSKSKSNKLKYLQM
gi|340502432|gb GITLDLGFSAFFTRNPEKF-------------R----ELKAEYLF
contig_34_subse GITLDLGFSACEVSVEDGN---------ADATRVLREADLTKVQC
Lt_contig2959_s GITLDLGFSACEVSIEDGN---------EDLTNVLRAADLTKLQC
PHYCAscaffold_1 GITLDLGFSSFLLKPSA--------------------QVKPCLQV
Contig13961_sub GIT------------------------------------------
supercont1.106_ GITLDLGFSSFKRKTPSQLXXT--FYRVLTSPIALTAHGSDEVQF
T.congo.pschr4_ GITLDLGFSATCVSTESA-------------APALFALGLKHVQC
eEFsec.Human.SP GITLDLGFSCFSVPLPARL--RSSLPEFQAAPEAEPEPGEPLLQV
cons
gi|325181502|em --VDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILL
Cf_Contig741_su TLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVL
gi|93569114|gb| TLVDCPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVI
gi|328869808|gb TLVDCPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAECIVI
scaffold_30_sub TLVDCPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVL
gi|340502432|gb TLVDCPGHASLIKTILGGASIIDIMFLVIDINKGIT--TAECLVI
contig_34_subse TLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLIL
Lt_contig2959_s TLVDCPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVL
PHYCAscaffold_1 TLVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLL
Contig13961_sub ---------------------------------------------
supercont1.106_ TLVDCPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAECIVV
T.congo.pschr4_ TFVDCPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVI
eEFsec.Human.SP TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI
cons
gi|325181502|em ARQVGVPALVVFLNKVDQVDDEEL---LELV---EMEIRELLDL-
Cf_Contig741_su GEVLAKP-LVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRR-
gi|93569114|gb| GEITCKK-GIIILNKIDQIPVESRK---EKIEQVSSKLRKALEK-
gi|328869808|gb GEITCKK-GIIILNKIDQIPQESRQ---SKIDTMSTKLRKVLEK-
scaffold_30_sub AELTSST-LIIALNKIDMFPIAERE---QRLQEATQKVRERLKQS
gi|340502432|gb AELLIK--LIVVLNKIDTIPIEKRE---EII-IKKKELQKVF-K-
contig_34_subse GEVLAKP-LVVVLNKMDAIQGASPAAKEAALAALKRKLQQVFRR-
Lt_contig2959_s GEVLAKP-LVVVLNKVDAIQGATPEAKVAALAALRRKLQQTFRR-
PHYCAscaffold_1 ATLIAKRSVVVALTKTDLVPSAERD---NVIGKCSHEVRSFMATN
Contig13961_sub ---------------------------------------------
supercont1.106_ GEITCDR-MVVVLNKIDLVPEEERA---KKIAKMTSGMKITLQQ-
T.congo.pschr4_ GEVLNKP-LVVVINKIDAVQGLTQAEQRANLDKLRRRLRKTFER-
eEFsec.Human.SP GQIACQK-LVVVLNKIDLLPEGKRQ---AAIDKMTKKMQKTLEN-
cons
gi|325181502|em YDFP-SEEIPIIRGSALAAVEGRD----HPIGRDAVLQL-VEHVD
Cf_Contig741_su TRW---PTVTVVEVAAAPRDVADG----SSSSSSGMAAP-YNVTL
gi|93569114|gb| TCF---KDSLIIPFSATGGSSSGGGSNSNKIEPIGIDLL-TKELL
gi|328869808|gb TCF---SQSPMVSVSANPGQQQPL----QPSQPIGLNQM-IDELC
scaffold_30_sub TKFNDPSQVPIIGVSACMGGEKVA----AVAIDKAPSSS-TSSTI
gi|340502432|gb TKF---GNVPIIPVSAVENENKNM-------------LL-ID-CL
contig_34_subse TRW---PTVAIVEVAAAPRETEAV----LPQVLRAV----DLAAL
Lt_contig2959_s TRW---PTVAIVEVAAAPLNTEAV----LPQVLRAV----DLAAL
PHYCAscaffold_1 FNFHDTSSIPVVPVAVGSNQDP-----------QGIPQL-LEALN
Contig13961_sub ---------------------------------------------
supercont1.106_ TRF---KTVSVTSTSVLPGGEIVG----LDELVKHFYES-LQGLE
T.congo.pschr4_ TRW---PHVSMVEVSAAPRGGSAE----GDAAVGGHCVPINVDAM
eEFsec.Human.SP TKF---RGAPIIPVAAKPGGPEAP----ETEAPQGIPEL-IELLT
cons
gi|325181502|em NYIPDPVRDFEKPFLMPVEDVFSIAGRGTVVSGRVEHGVINAGDE
Cf_Contig741_su KAAKAREGERPERFYMLVDHCFAVRGQGTVFTGTVVAGMVRVGDT
gi|93569114|gb| NFINIPKREAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQI
gi|328869808|gb KFIEIPKRDDQGTFLFEFDHCFQIKGQGSVLTGTVLKGSIEINQT
scaffold_30_sub TKGSSTNSNSNSNFYFAIDHCFPIKGMGTVLTGTCLNGSINVNDI
gi|340502432|gb LDIEIPKRNKDGPFYFLIDHCFPIKGKGSVITGTVIGS-HTSG-E
contig_34_subse KSAKESEAERPAQFYMLVDHCFAVRGQGTVFTGTVVAGVVRVGDT
Lt_contig2959_s KAAKESEFERPAQFYMLVDHCFPVRGQGTVFTGTVVAGVVRVGDT
PHYCAscaffold_1 ANLQVPERDHSGSFCLAVDHCFSVPGNGTILTGTVLSGALERGDE
Contig13961_sub ---------------------------------------------
supercont1.106_ ESLSDLKRPQAAHFLFAIDHCFFIKGQGTVLTGTVLSGSVKAGDT
T.congo.pschr4_ KR-QRDAQHRPEDLVMMVDHCFALKGQGTVFTGTILRGKVSVGDS
eEFsec.Human.SP SQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDS
cons
gi|325181502|em VELVGIRSTPTKTTCTGVEMFKKQLDRGQAGDNVGLLLRGLKRDD
Cf_Contig741_su VLVPDLQ---TTRKVKGLQVFHQPVETARSGDRVGLCVAQFDPAS
gi|93569114|gb| IQIPQLN---IEKKVKSMQMFHKPIKKAIQGDRVGVCITQLDSSL
gi|328869808|gb VQIPQLN---LEKKIKSMQMFHKPVKKVVQGDRAGICVTQLDSKL
scaffold_30_sub IEFPSLGN--LQRKVKSIQMFKRRCLKIQQGDRAGICVSNFDSTS
gi|340502432|gb VEFPLI-K---TKKSKSMQMFKKPVNI--IGDRAAILF-TLDHNL
contig_34_subse VLVPELQ---TTRKVKGLQVFHKPVEMAQSGDRVGLCVAQFDPTW
Lt_contig2959_s VLVPEMQ---TTRKVKGLQMFHKPVESAKSGDRVGLCVAQFDPAW
PHYCAscaffold_1 LELLPLG---AKVKVKTLQVFKKDVAKCSQGDRVGLRVNGLDPAL
Contig13961_sub ---------------------------------------------
supercont1.106_ VEIPSLK---IKKKVKSLQMFRQPVDGLAQSDRGAILVTQFDAKL
T.congo.pschr4_ ILIPESQ---VVKKVKGLQVFRKPVQCAGQGDRVGLSVVQFDADG
eEFsec.Human.SP VEIPALK---VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL
cons
gi|325181502|em VMRGQVVCKPG-S---H----------------------------
Cf_Contig741_su MERGV-LCSSAGSERTLVSTSQLIAQVHKV-RYHP-FLADTHTKF
gi|93569114|gb| LERGL-VCSN-NS---IPLLSSALISIEKV-RFYK-QQVNSKQQF
gi|328869808|gb LERGL-LCTP-KT---VPLLNGAIISIEKV-RFYK-NLVKTNSHF
scaffold_30_sub LERGV-CSTP-GS---VKYVKGGIALVRKIIPHYKGPYLKNKSKY
gi|340502432|gb IERGI-ACTPG-I---A-FTKYSIIPVNKV-NYFK-YPIKSKGKY
contig_34_subse MERGV-LCSAASSGRALVSSSQLIARVHRV-RYHP-LPCDTHTKF
Lt_contig2959_s MERGV-LCSAASSGRMLMSSSQLIARVHRV-RYHP-LPCDTHTKF
PHYCAscaffold_1 VERAL-AVSPPGS---LTPVTQVVIPVTKV-PFFHEISCKSGGKC
Contig13961_sub ---------------------------------------------
supercont1.106_ LERGY-ACTEG-S---IPTAYAMICTANRV-RIYK-PELKSGTKF
T.congo.pschr4_ MERGL-LCSAAA----FESVSTLIAEVSRV-RFHQ-LACTIHTKF
eEFsec.Human.SP LERGL-VCAPE-S---LHTVHAALISVEKI-PYFR-GPLQTKAKF
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su HI-----------TIGHATVMGTMRYFSRPHVSAA----------
gi|93569114|gb| HI-----------TIGHSTVIGTITLFSSNII-------------
gi|328869808|gb HVLLTHKILFKIVTIGHTTTTAIVTFFGNKILDQSTP--------
scaffold_30_sub HV-----------SVGHSTVMATVSFWDWKE--------------
gi|340502432|gb HI-----------TTCHFTCMGSIKLFKHEINIEEKELESIKVNI
contig_34_subse HI-----------TIGHATVMGTMRYFARPPRANE----------
Lt_contig2959_s HI-----------TIGHATRMGTMRYFARPPCMSE----------
PHYCAscaffold_1 HV-----------TVGHTTIIAMATFFTCLVCPASI---------
Contig13961_sub ---------------------------------------------
supercont1.106_ HV-----------SVGHQTVMAEAQFFGIVD--------------
T.congo.pschr4_ HI-----------TIGHSTVMGSMRFFSRPTVTEA----------
eEFsec.Human.SP HI-----------TVGHETVMGRLMFFSPAP--------------
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su --------AGGSGDTFDPSVESAYVEELGEAAVATYSTLQSSTDS
gi|93569114|gb| -------------EPFNSIKEYIYEDTLHATTINTSSNDNNTINS
gi|328869808|gb ---TTK-EETGSIHQFNEKIEYSFMEYLEPTSL------------
scaffold_30_sub ---DFL-LQDGLVDSLTKDNEHDASLGGVSSTKTNGSNGNDQDNN
gi|340502432|gb NFDEGGKKKGGYI--FDFN-KYEYVECYDEY--------------
contig_34_subse ----SL-DVPGTGASFDPSIESTYVEELDDGVVASYTS---TDTT
Lt_contig2959_s ----GL-DVPGAVASFDSSIESAYVEELDDSVVASYSS---TDAT
PHYCAscaffold_1 -------RAGGFLSS----------------------KDACGVFT
Contig13961_sub ---------------------------------------------
supercont1.106_ ---DGG-TDEGSSGDFTFDRDYIHLANYAEIRCKPCMSS--FQPV
T.congo.pschr4_ -----------AAQPFDLTQESEYVESLGEEAYLTFEAP--VEEL
eEFsec.Human.SP ---DNF-DQEPILDSFNFSQEYLFQEQYLSKDLTPAVTD--NDEA
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su AAVAGRPLPIGAAA-SDFYAVLLLERPVLAAVGNAMVAMRLDVER
gi|93569114|gb| NNVEN--KESFYPV-GSQFALIKFDHPILCPLNSVVIGSKLDVNL
gi|328869808|gb ----------EYPV-GSQFALIKFDHPVLCPLESVIIGSKLDVAL
scaffold_30_sub GTIKN--NKQKQPESLLHWAILDFQTPVYCPLQSLIIGSRLDAPV
gi|340502432|gb ----------IKKA-DELFALIEFEKEMYASAGTLFICSKFDTDV
contig_34_subse ASVPGRPLPVAPAE-QDYYAVLLLERPVLAAPGVSMIAMRLDVER
Lt_contig2959_s ACVPGRPLPVAQAG-QDYYAVLLLERPVLAAPGVSMIAMRLDVER
PHYCAscaffold_1 NGSRRQALPVSIGFLWSYFVEFD----------------------
Contig13961_sub ---------------------------------------------
supercont1.106_ RSNVGDAQRVSFVP-ADIYVLLNLAQPLLCPPDSLYIASRLDADI
T.congo.pschr4_ KREAGAPVAVKYGP-LTYFAIVLLEKPVMAAVGTPLIATRLDVEQ
eEFsec.Human.SP DKKAGQAT-EGHCP-RQQWALVEFEKPVTCPRLCLVIGSRLDADI
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su D-NFCRIALAGSVC-------------------------------
gi|93569114|gb| DSTGCRIAFHGNLLEGIDDTNKQ-SLFSKLKIYKNKSKQGQVERI
gi|328869808|gb DTSGCRIAFHGSLLQGIDASNRQ-ILHDTLRIFKTKVKEGAVERV
scaffold_30_sub EASSCRLAFCGRLIERLTDPSKD---IHKIRWYTPKEKRGIVSRL
gi|340502432|gb SSNLCRLGFYGNALVALVQGDFNK--DKKLKIFREKTREGTVEKV
contig_34_subse E-NFCRIALAGTVC-------------------------------
Lt_contig2959_s E-NFCRIALAGTVC-------------------------------
PHYCAscaffold_1 ---------------------------------------------
Contig13961_sub ---------------------------------------------
supercont1.106_ NSKAVRLAFHGRISSLMASPKYKADTLPRLLIYKRKFREGTVDRI
T.congo.pschr4_ D-NMCRIAIAGSVRALLHDEKADGASWRSLPIIRYKTRTLVVERV
eEFsec.Human.SP HTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERA
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| HNENTIIGKNLFKKDSDISSFIGMKVL-FET-GEIGILDSSFGKT
gi|328869808|gb HSEDTLIGKNLFSKQTDLSSFIGMKVV-FEN-GTVGVIDSSFGKT
scaffold_30_sub AVRYELYGSDLFKKETLLKPFLGMKLITYPS-NDIGELKSAFGTS
gi|340502432|gb CDGFTIIIKDMFKKETKIELFLNKSIY-IENFGNVGKI-CAFGKS
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
Contig13961_sub ---------------------------------------------
supercont1.106_ VNANSLIGRGLFKKETNIKIFTGMKVT-LST-GENGFIDGAFGQS
T.congo.pschr4_ VSDRSCIASGVVTVEKHVQKFIGLRVH-FRP-TGEGTIDSAFGKT
eEFsec.Human.SP MDDYSVIGRSLFKKETNIQLFVGLKVH-LST-GELGIIDSAFGQS
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| GKVKIQIQ----------TGVWKFQ--------------------
gi|328869808|gb GKIRILIL----------PGTL-----------------------
scaffold_30_sub GKFRVVFP----------SGTTAKENDIL-R--------------
gi|340502432|gb GKIKALFS----------N--------------------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
Contig13961_sub ---------------------------------------------
supercont1.106_ GKFSVGLWSAFHPKVQIPGGLSEDTLNNLGNKGKKKGS----DAV
T.congo.pschr4_ GKVKLIFN----------EPYKTRLKKRMTPVPLKKDRIRREERL
eEFsec.Human.SP GKFKIHIP----------GGLSPESKKILTPALKKRARAGRGEAT
cons
gi|325181502|em ---------------------------------VPH
Cf_Contig741_su -----------------------------------H
gi|93569114|gb| --------------------------------TKIL
gi|328869808|gb --------------------------------PPQT
scaffold_30_sub -------------------------------LPFKR
gi|340502432|gb ----------------------------------GI
contig_34_subse -----------------------------------H
Lt_contig2959_s -----------------------------------H
PHYCAscaffold_1 -------------------------------LEPCM
Contig13961_sub -----------------------------------L
supercont1.106_ K-------KNENSPVTINLSFKKYTYDAS--GRMVQ
T.congo.pschr4_ RK------------------------ERA--ARAAE
eEFsec.Human.SP RQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQSP
cons