T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:10 sec.
SCORE=84
*
 BAD AVG GOOD
*
gi|325181502|em   :  82
Cf_Contig741_su   :  84
gi|93569114|gb|   :  85
gi|328869808|gb   :  86
scaffold_30_sub   :  83
gi|340502432|gb   :  81
contig_34_subse   :  84
Lt_contig2959_s   :  85
PHYCAscaffold_1   :  80
Contig13961_sub   :  97
supercont1.106_   :  85
T.congo.pschr4_   :  83
eEFsec.Droso.SP   :  85
cons              :  84

gi|325181502|em   ---HVNIGTIGHVDHGKTTLTAALTKVLSEKGGAKFTSYEDIDKA
Cf_Contig741_su   --LNVNVGLLGHVDSGKTALAKALSRTAS---------TAAFDKS
gi|93569114|gb|   IPINFNIGIMGHVDSGKTSLAKALSTNLS---------TASLDKS
gi|328869808|gb   --LNINVGIMGHVDSGKTSLAKVLSTSLS---------TAALDKS
scaffold_30_sub   --ININVGILGHVDSGKTSLVKTLSTLLS---------TASLDKS
gi|340502432|gb   -------GVLGHIDSGKTSLSKALSKITS---------TASLDKN
contig_34_subse   --LNVNIGLLGHVDSGKTALAKALSSTAS---------TAAFDKS
Lt_contig2959_s   --LNVNIGLLGHVDSGKTALAKALSSTAS---------TAAFDKS
PHYCAscaffold_1   --LNVNVGVLGHVDSGKTSLVRALSTQLS---------TAALDKH
Contig13961_sub   --LNVNVGILGHVDSGKTSLARAISTLLS---------TAALDKS
supercont1.106_   --LNINVGVLGHVDSGKTSLCKVLSTVAS---------TASFDNN
T.congo.pschr4_   P-VNINIGILGHVDSGKTSLAKALSLTAS---------TAAFDKS
eEFsec.Droso.SP   MPINFNIGLLGHVDSGKTTLAKALSSISS---------TAAFDKN

cons                     * :**:* ***:*  .::   *            :*: 


gi|325181502|em   PEERARGITISTAHVEYET-----------------EKRHYAHVD
Cf_Contig741_su   PQSQSRGITLDLGFSACAVLR--AA--------NL-DKVQCTLVD
gi|93569114|gb|   PASQERGITLDLGFSSFQIKKDKLAENNNNNNDNN-NNIQITLVD
gi|328869808|gb   PASQERGITLDLGFSSFNVDVASH--------PLL-SQRQFTLVD
scaffold_30_sub   KQSRQRGMTLDLGFSCFFMDLPSKS-------NKL-KYLQMTLVD
gi|340502432|gb   PS--ERGITLDLGFSAFFTRNPEKF-------RELKAEYLFTLVD
contig_34_subse   PQSQSRGITLDLGFSACEVSVEDEA--------DL-TKVQCTLVD
Lt_contig2959_s   PQSQSRGITLDLGFSAYLTNVLRAA--------DL-TKLQCTLVD
PHYCAscaffold_1   PQSQQRGITLDLGFSSFLLKPSAQV---------K-PCLQVTLVD
Contig13961_sub   PASQERGIT------------------------------------
supercont1.106_   PQSQARGITLDLGFSSFKRKTPSQL-------EHL-DEVQFTLVD
T.congo.pschr4_   PESQRRGITLDLGFSATCVSTESAAPAL--FALGL-KHVQCTFVD
eEFsec.Droso.SP   PQSVERGITLDLGFSGLLVDAPAHL-------PQG-EQLQFTFVD

cons                   **:*                                    


gi|325181502|em   CPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQV
Cf_Contig741_su   CPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVLGEVL
gi|93569114|gb|   CPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVIGEIT
gi|328869808|gb   CPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAECIVIGEIT
scaffold_30_sub   CPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVLAELT
gi|340502432|gb   CPGHASLIKTILGGASIIDIMFLVIDINKGI--TTAECLVIAELL
contig_34_subse   CPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLILGEVL
Lt_contig2959_s   CPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVLGEVL
PHYCAscaffold_1   CPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLATLI
Contig13961_sub   ---------------------------------------------
supercont1.106_   CPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAECIVVGEIT
T.congo.pschr4_   CPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVIGEVL
eEFsec.Droso.SP   CPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELL

cons                                                           


gi|325181502|em   GVPALVVFLNKVDQVDDEELLE---LV---EMEIRELLDL-YDFP
Cf_Contig741_su   AKP-LVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRR-TRWP
gi|93569114|gb|   CKK-GIIILNKIDQIPVESRKEK---IEQVSSKLRKALEK-TCF-
gi|328869808|gb   CKK-GIIILNKIDQIPQESRQSK---IDTMSTKLRKVLEK-TCF-
scaffold_30_sub   SST-LIIALNKIDMFPIAEREQR---LQEATQKVRERLKQSTKFN
gi|340502432|gb   IK--LIVVLNKIDTIPIEKREEI---II-KKKELQKVF-K-TKF-
contig_34_subse   AKP-LVVVLNKMDAIQGASPAAKEAALAALKRKLQQVAGG-IGH-
Lt_contig2959_s   AKP-LVVVLNKVDAIQGATPEAKVAALAALRRKLQQTFRR-TRWP
PHYCAscaffold_1   AKRSVVVALTKTDLVPSAERDNV---IGKCSHEVRSFMATNFNFH
Contig13961_sub   ---------------------------------------------
supercont1.106_   CDR-MVVVLNKIDLVPEEERAKK---IAKMTSGMKITLQQ-TRFK
T.congo.pschr4_   NKP-LVVVINKIDAVQGLTQAEQRANLDKLRRRLRKTFER-TRWP
eEFsec.Droso.SP   QKK-LIVVINKIDVYPENQRASK---LEKLRLRLAKTLEA-TTFG

cons                                                           


gi|325181502|em   -SEEIPIIRGSALA---GDA-VLQLVEHVDNYIPDPVRDFEKPFL
Cf_Contig741_su   ---TY---NVSALL--PQVLRAVDLA-A-LKAAKAREGERPERFY
gi|93569114|gb|   --KDSLIIPFSATV--EPIG-IDLLTKELLNFINIPKREAKGDLL
gi|328869808|gb   --SQSPMVSVSAN---PGVV-SEEMIDELCKFIEIPKRDDQGTFL
scaffold_30_sub   DPSQVPIIGVSAC---MGAP-SSSTSSTITKG-SSTNSNSNSNFY
gi|340502432|gb   --GNVPIIPVSAVE---NEN-KNMLLIDCLLDIEIPKRNKDGPFY
contig_34_subse   -----PLNTEAVL---PQVLRAVDLA-A-LKSAKESEAERPAQFY
Lt_contig2959_s   ---TVAIVEVAAA---PREA-AGGIG---PPAAKESEFERPAQFY
PHYCAscaffold_1   DTSSIPVVPVAVGSNQDPQG-IPQLLEALNANLQVPERDHSGSFC
Contig13961_sub   ---------------------------------------------
supercont1.106_   ---TVSVTSTSVLP---GGE-IVGLDELVKESLSDLKRPQAAHFL
T.congo.pschr4_   ---HVSMVEVSAAP--RGGS-AEGLVDVEAMKRQRDAQHRPEDLV
eEFsec.Droso.SP   --GQVPICAVSALQ---GTH-IAELREVLREAYFQPQRNLADPLF

cons                                                           


gi|325181502|em   MPVEDVFSIAGRGTVVSGRVEHGVINAGDEVELVGIRSTPTKTTC
Cf_Contig741_su   MLVDHCFAVRGQGTVFTGTVVAGMVRVGDTVLVPDLQ---TTRKV
gi|93569114|gb|   FEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQLN---IEKKV
gi|328869808|gb   FEFDHCFQIKGQGSVLTGTVLKGSIEINQTVQIPQLN---LEKKI
scaffold_30_sub   FAIDHCFPIKGMGTVLTGTCLNGSINVNDIIEFPSLGN--LQRKV
gi|340502432|gb   FLIDHCFPIKGKGSVITGTVIGS-HT-SGEVEFPLI-K---TKKS
contig_34_subse   MLVDHCFAVRGQGTVFTGTVVAGVVRVGDTVLVPELQ---TTRKV
Lt_contig2959_s   MLVDHCFPVRGQGTVFTGTVVAGVVRVGDTVLVPEMQ---TTRKV
PHYCAscaffold_1   LAVDHCFSVPGNGTILTGTVLSGALERGDELELLPLG---AKVKV
Contig13961_sub   ---------------------------------------------
supercont1.106_   FAIDHCFFIKGQGTVLTGTVLSGSVKAGDTVEIPSLK---IKKKV
T.congo.pschr4_   MMVDHCFALKGQGTVFTGTILRGKVSVGDSILIPESQ---VVKKV
eEFsec.Droso.SP   MYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALG---EQRKV

cons                                                           


gi|325181502|em   TGVEMFKKQLDRGQAGDNVGLLLRGLKRDDVMRGQVVCK-P----
Cf_Contig741_su   KGLQVFHQPVETARSGDRVGLCVAQFDPASMERGV-LCSS-AGSE
gi|93569114|gb|   KSMQMFHKPIKKAIQGDRVGVCITQLDSSLLERGL-VCSN-NS--
gi|328869808|gb   KSMQMFHKPVKKVVQGDRAGICVTQLDSKLLERGL-LCTP-KT--
scaffold_30_sub   KSIQMFKRRCLKIQQGDRAGICVSNFDSTSLERGV-CSTP-GS--
gi|340502432|gb   KSMQMFKKPVNI--IGDRAAILF-TLDHNLIERGI-ACTP-GI--
contig_34_subse   KGLQVFHKPVEMAQSGDRVGLCVAQFDPTWMERGV-LCSA-ASSG
Lt_contig2959_s   KGLQMFHKPVESAKSGDRVGLCVAQFDPAWMERGV-LCSA-ASSG
PHYCAscaffold_1   KTLQVFKKDVAKCSQGDRVGLRVNGLDPALVERAL-AVSPPGS--
Contig13961_sub   ---------------------------------------------
supercont1.106_   KSLQMFRQPVDGLAQSDRGAILVTQFDAKLLERGY-ACTE-GS--
T.congo.pschr4_   KGLQVFRKPVQCAGQGDRVGLSVVQFDADGMERGL-LCSA-AA--
eEFsec.Droso.SP   KSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGI-ITQP-GY--

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   RTLVSTSQLIAQVHKV-RYHP-FLADTHTKFHITIGHATVMGTMR
gi|93569114|gb|   --IPLLSSALISIEKV-RFYK-QQVNSKQQFHITIGHSTVIGTIT
gi|328869808|gb   --VPLLNGAIISIEKV-RFYK-NLVKTNSHFHVTIGHTTTTAIVT
scaffold_30_sub   --VKYVKGGIALVRKIIPHYKGPYLKNKSKYHVSVGHSTVMATVS
gi|340502432|gb   --A-FTKYSIIPVNKV-NYFK-YPIKSKGKYHITTCHFTCMGSIK
contig_34_subse   RALVSSSQLIARVHRV-RYHP-LPCDTHTKFHITIGHATVMGTMR
Lt_contig2959_s   RMLMSSSQLIARVHRV-RYHP-LPCDTHTKFHITIGHATRMGTMR
PHYCAscaffold_1   --LTPVTQVVIPVTKV-PFFHEISCKSGGKCHVTVGHTTIIAMAT
Contig13961_sub   ---------------------------------------------
supercont1.106_   --IPTAYAMICTANRV-RIYK-PELKSGTKFHVSVGHQTVMAEAQ
T.congo.pschr4_   --FESVSTLIAEVSRV-RFHQ-LACTIHTKFHITIGHSTVMGSMR
eEFsec.Droso.SP   --LKPIYAVCLQFKPI-RYYK-EVIKSMRKMHISVGHNTVMANVT

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   YFSRPHVSAAA---GGSGDTFDPSVESAYVEEL--------AASD
gi|93569114|gb|   LFSSNI-----------IEPFNSIKEYIYEDTLHATTIN--TSST
gi|328869808|gb   FFEEETG---------SIHQFNEKIEYSFMEYLEPTSLE-YPVGS
scaffold_30_sub   FWGGVSS---------TKTNGSNGNDQDNNGTIKNNKQKQPESLL
gi|340502432|gb   LFKHEINIEEKEL-----------DKYEYVECY-DEYIK--KADE
contig_34_subse   YFARPPRANESLDVPGTGASFDPSIESTYVEEL----------DD
Lt_contig2959_s   YFARPPCMSEGLDVPGAVASFDSSIESAYVEEL----------DD
PHYCAscaffold_1   FFTCLGGDK------GDETGFNPSALYEYVEELSDEK--EAEEGM
Contig13961_sub   ---------------------------------------------
supercont1.106_   FFGIVDDGGTD---EGSSGDFTFDRDYIHLAN------Y--AEAN
T.congo.pschr4_   FFSRPTVTEAGHAAPVEELKREAG-APVAVKY---------GPLT
eEFsec.Droso.SP   LFRDTDGTT---------STFQLDKEYEYMEDVQPAEVQ--HNDV

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   FYAVLLLERPVLAAVGNAMVAMRLDVERD-NFCRIALAGS-----
gi|93569114|gb|   QFALIKFDHPILCPLNSVVIGSKLDVNLDSTGCRIAFHGNLLEGI
gi|328869808|gb   QFALIKFDHPVLCPLESVIIGSKLDVALDTSGCRIAFHGSLLQGI
scaffold_30_sub   HWAILDFQTPVYCPLQSLIIGSRLDAPVEASSCRLAFCGR-----
gi|340502432|gb   LFALIEFEKEMYASAGTLFICSKFDTDVSSNLCRLGFYGNALVAL
contig_34_subse   YYAVLLLERPVLAAPGVSMIAMRLDVERE-NFCRIALAGT-----
Lt_contig2959_s   YYAVLLLERPVLAAPGVSMIAMRLDVERE-NFCRIALAGT-----
PHYCAscaffold_1   IFALLQFEQAVFCPPKTLVVCSRMDLDAKRFPCRLAFYGVIQGVV
Contig13961_sub   ---------------------------------------------
supercont1.106_   IYVLLNLAQPLLCPPDSLYIASRLDADINSKAVRLAFHGRISSLM
T.congo.pschr4_   YFAIVLLEKPVMAAVGTPLIATRLDVEQD-NMCRIAIAGSVRALL
eEFsec.Droso.SP   IYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQT

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   DDTNKQ-SLFSKLKIYKNKS-------------------------
gi|328869808|gb   DASNRQ-ILHDTLRIFKTKV-------------------------
scaffold_30_sub   ---------------------------------------------
gi|340502432|gb   VQGDFNK--DKKLKIFREKT-------------------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   GSREKFTLRLFKLMALKPPKLKGKATGPGQSLKTTVKAVEKDVES
Contig13961_sub   ---------------------------------------------
supercont1.106_   ASPKYKADTLPRLLIYKRKF-------------------------
T.congo.pschr4_   HDEKADGASWRSLPIIRYKT-------------------------
eEFsec.Droso.SP   HSSKYFQEELPKLRIFKRKQ-------------------------

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   -------------KQGQVERIHNENTIIGKN---LFKKDSDISSF
gi|328869808|gb   -------------KEGAVERVHSEDTLIGKN---LFSKQTDLSSF
scaffold_30_sub   ---------------------------------------------
gi|340502432|gb   -------------REGTVEKVCDGFTIIIKD---MFKKETKIELF
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ISIDSSALRLAEPKSGQIERLKGETTAAAKKKHTLLRKQ------
Contig13961_sub   ---------------------------------------------
supercont1.106_   -------------REGTVDRIVNANSLIGRG---LFKKETNIKIF
T.congo.pschr4_   -------------RTLVVERVVSDRSCIASG---VVTVEK-HEGG
eEFsec.Droso.SP   -------------KVGSIQRVVNSSEVIVQN---LFKD-AKRDLY

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   IGMKVLFET-GEIGILDSSFGK-TGKVKIQIQTGLASNCIGNLKN
gi|328869808|gb   IGMKVVFEN-GTVGVIDSSFGK-TGKIRILILPDCSPFTI----S
scaffold_30_sub   ---------------------------------------------
gi|340502432|gb   LNKSIYIENFGNVGKI-CAFGK-SGKIKALFSN------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   -----------------LAFNMHSVKVRINLKK----RQILTQRE
Contig13961_sub   ---------------------------------------------
supercont1.106_   TGMKVTLST-GENGFIDGAFGQ-SGKFSVQIPGGLSEDTLNNL--
T.congo.pschr4_   TGGDTSSST-KKEGTIDSAFGK-TGKVKLIFN-------------
eEFsec.Droso.SP   VGKNVELST-GEKGRIERTFGQ-TSKVAITFQDALSPETISNVKN

cons                                                           


gi|325181502|em   -------------------G
Cf_Contig741_su   -------------------V
gi|93569114|gb|   ------------------VE
gi|328869808|gb   ------------------SI
scaffold_30_sub   -------------------L
gi|340502432|gb   ------------------GI
contig_34_subse   -------------------V
Lt_contig2959_s   -------------------V
PHYCAscaffold_1   ------------------LF
Contig13961_sub   -------------------L
supercont1.106_   ------------------GN
T.congo.pschr4_   -------------------E
eEFsec.Droso.SP   VKVLLNCKKYVFNKQAGLFQ

cons