T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:10 sec.
SCORE=84
*
BAD AVG GOOD
*
gi|325181502|em : 82
Cf_Contig741_su : 84
gi|93569114|gb| : 85
gi|328869808|gb : 86
scaffold_30_sub : 83
gi|340502432|gb : 81
contig_34_subse : 84
Lt_contig2959_s : 85
PHYCAscaffold_1 : 80
Contig13961_sub : 97
supercont1.106_ : 85
T.congo.pschr4_ : 83
eEFsec.Droso.SP : 85
cons : 84
gi|325181502|em ---HVNIGTIGHVDHGKTTLTAALTKVLSEKGGAKFTSYEDIDKA
Cf_Contig741_su --LNVNVGLLGHVDSGKTALAKALSRTAS---------TAAFDKS
gi|93569114|gb| IPINFNIGIMGHVDSGKTSLAKALSTNLS---------TASLDKS
gi|328869808|gb --LNINVGIMGHVDSGKTSLAKVLSTSLS---------TAALDKS
scaffold_30_sub --ININVGILGHVDSGKTSLVKTLSTLLS---------TASLDKS
gi|340502432|gb -------GVLGHIDSGKTSLSKALSKITS---------TASLDKN
contig_34_subse --LNVNIGLLGHVDSGKTALAKALSSTAS---------TAAFDKS
Lt_contig2959_s --LNVNIGLLGHVDSGKTALAKALSSTAS---------TAAFDKS
PHYCAscaffold_1 --LNVNVGVLGHVDSGKTSLVRALSTQLS---------TAALDKH
Contig13961_sub --LNVNVGILGHVDSGKTSLARAISTLLS---------TAALDKS
supercont1.106_ --LNINVGVLGHVDSGKTSLCKVLSTVAS---------TASFDNN
T.congo.pschr4_ P-VNINIGILGHVDSGKTSLAKALSLTAS---------TAAFDKS
eEFsec.Droso.SP MPINFNIGLLGHVDSGKTTLAKALSSISS---------TAAFDKN
cons * :**:* ***:* .:: * :*:
gi|325181502|em PEERARGITISTAHVEYET-----------------EKRHYAHVD
Cf_Contig741_su PQSQSRGITLDLGFSACAVLR--AA--------NL-DKVQCTLVD
gi|93569114|gb| PASQERGITLDLGFSSFQIKKDKLAENNNNNNDNN-NNIQITLVD
gi|328869808|gb PASQERGITLDLGFSSFNVDVASH--------PLL-SQRQFTLVD
scaffold_30_sub KQSRQRGMTLDLGFSCFFMDLPSKS-------NKL-KYLQMTLVD
gi|340502432|gb PS--ERGITLDLGFSAFFTRNPEKF-------RELKAEYLFTLVD
contig_34_subse PQSQSRGITLDLGFSACEVSVEDEA--------DL-TKVQCTLVD
Lt_contig2959_s PQSQSRGITLDLGFSAYLTNVLRAA--------DL-TKLQCTLVD
PHYCAscaffold_1 PQSQQRGITLDLGFSSFLLKPSAQV---------K-PCLQVTLVD
Contig13961_sub PASQERGIT------------------------------------
supercont1.106_ PQSQARGITLDLGFSSFKRKTPSQL-------EHL-DEVQFTLVD
T.congo.pschr4_ PESQRRGITLDLGFSATCVSTESAAPAL--FALGL-KHVQCTFVD
eEFsec.Droso.SP PQSVERGITLDLGFSGLLVDAPAHL-------PQG-EQLQFTFVD
cons **:*
gi|325181502|em CPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQV
Cf_Contig741_su CPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVLGEVL
gi|93569114|gb| CPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVIGEIT
gi|328869808|gb CPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAECIVIGEIT
scaffold_30_sub CPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVLAELT
gi|340502432|gb CPGHASLIKTILGGASIIDIMFLVIDINKGI--TTAECLVIAELL
contig_34_subse CPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLILGEVL
Lt_contig2959_s CPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVLGEVL
PHYCAscaffold_1 CPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLATLI
Contig13961_sub ---------------------------------------------
supercont1.106_ CPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAECIVVGEIT
T.congo.pschr4_ CPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVIGEVL
eEFsec.Droso.SP CPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELL
cons
gi|325181502|em GVPALVVFLNKVDQVDDEELLE---LV---EMEIRELLDL-YDFP
Cf_Contig741_su AKP-LVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRR-TRWP
gi|93569114|gb| CKK-GIIILNKIDQIPVESRKEK---IEQVSSKLRKALEK-TCF-
gi|328869808|gb CKK-GIIILNKIDQIPQESRQSK---IDTMSTKLRKVLEK-TCF-
scaffold_30_sub SST-LIIALNKIDMFPIAEREQR---LQEATQKVRERLKQSTKFN
gi|340502432|gb IK--LIVVLNKIDTIPIEKREEI---II-KKKELQKVF-K-TKF-
contig_34_subse AKP-LVVVLNKMDAIQGASPAAKEAALAALKRKLQQVAGG-IGH-
Lt_contig2959_s AKP-LVVVLNKVDAIQGATPEAKVAALAALRRKLQQTFRR-TRWP
PHYCAscaffold_1 AKRSVVVALTKTDLVPSAERDNV---IGKCSHEVRSFMATNFNFH
Contig13961_sub ---------------------------------------------
supercont1.106_ CDR-MVVVLNKIDLVPEEERAKK---IAKMTSGMKITLQQ-TRFK
T.congo.pschr4_ NKP-LVVVINKIDAVQGLTQAEQRANLDKLRRRLRKTFER-TRWP
eEFsec.Droso.SP QKK-LIVVINKIDVYPENQRASK---LEKLRLRLAKTLEA-TTFG
cons
gi|325181502|em -SEEIPIIRGSALA---GDA-VLQLVEHVDNYIPDPVRDFEKPFL
Cf_Contig741_su ---TY---NVSALL--PQVLRAVDLA-A-LKAAKAREGERPERFY
gi|93569114|gb| --KDSLIIPFSATV--EPIG-IDLLTKELLNFINIPKREAKGDLL
gi|328869808|gb --SQSPMVSVSAN---PGVV-SEEMIDELCKFIEIPKRDDQGTFL
scaffold_30_sub DPSQVPIIGVSAC---MGAP-SSSTSSTITKG-SSTNSNSNSNFY
gi|340502432|gb --GNVPIIPVSAVE---NEN-KNMLLIDCLLDIEIPKRNKDGPFY
contig_34_subse -----PLNTEAVL---PQVLRAVDLA-A-LKSAKESEAERPAQFY
Lt_contig2959_s ---TVAIVEVAAA---PREA-AGGIG---PPAAKESEFERPAQFY
PHYCAscaffold_1 DTSSIPVVPVAVGSNQDPQG-IPQLLEALNANLQVPERDHSGSFC
Contig13961_sub ---------------------------------------------
supercont1.106_ ---TVSVTSTSVLP---GGE-IVGLDELVKESLSDLKRPQAAHFL
T.congo.pschr4_ ---HVSMVEVSAAP--RGGS-AEGLVDVEAMKRQRDAQHRPEDLV
eEFsec.Droso.SP --GQVPICAVSALQ---GTH-IAELREVLREAYFQPQRNLADPLF
cons
gi|325181502|em MPVEDVFSIAGRGTVVSGRVEHGVINAGDEVELVGIRSTPTKTTC
Cf_Contig741_su MLVDHCFAVRGQGTVFTGTVVAGMVRVGDTVLVPDLQ---TTRKV
gi|93569114|gb| FEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQLN---IEKKV
gi|328869808|gb FEFDHCFQIKGQGSVLTGTVLKGSIEINQTVQIPQLN---LEKKI
scaffold_30_sub FAIDHCFPIKGMGTVLTGTCLNGSINVNDIIEFPSLGN--LQRKV
gi|340502432|gb FLIDHCFPIKGKGSVITGTVIGS-HT-SGEVEFPLI-K---TKKS
contig_34_subse MLVDHCFAVRGQGTVFTGTVVAGVVRVGDTVLVPELQ---TTRKV
Lt_contig2959_s MLVDHCFPVRGQGTVFTGTVVAGVVRVGDTVLVPEMQ---TTRKV
PHYCAscaffold_1 LAVDHCFSVPGNGTILTGTVLSGALERGDELELLPLG---AKVKV
Contig13961_sub ---------------------------------------------
supercont1.106_ FAIDHCFFIKGQGTVLTGTVLSGSVKAGDTVEIPSLK---IKKKV
T.congo.pschr4_ MMVDHCFALKGQGTVFTGTILRGKVSVGDSILIPESQ---VVKKV
eEFsec.Droso.SP MYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALG---EQRKV
cons
gi|325181502|em TGVEMFKKQLDRGQAGDNVGLLLRGLKRDDVMRGQVVCK-P----
Cf_Contig741_su KGLQVFHQPVETARSGDRVGLCVAQFDPASMERGV-LCSS-AGSE
gi|93569114|gb| KSMQMFHKPIKKAIQGDRVGVCITQLDSSLLERGL-VCSN-NS--
gi|328869808|gb KSMQMFHKPVKKVVQGDRAGICVTQLDSKLLERGL-LCTP-KT--
scaffold_30_sub KSIQMFKRRCLKIQQGDRAGICVSNFDSTSLERGV-CSTP-GS--
gi|340502432|gb KSMQMFKKPVNI--IGDRAAILF-TLDHNLIERGI-ACTP-GI--
contig_34_subse KGLQVFHKPVEMAQSGDRVGLCVAQFDPTWMERGV-LCSA-ASSG
Lt_contig2959_s KGLQMFHKPVESAKSGDRVGLCVAQFDPAWMERGV-LCSA-ASSG
PHYCAscaffold_1 KTLQVFKKDVAKCSQGDRVGLRVNGLDPALVERAL-AVSPPGS--
Contig13961_sub ---------------------------------------------
supercont1.106_ KSLQMFRQPVDGLAQSDRGAILVTQFDAKLLERGY-ACTE-GS--
T.congo.pschr4_ KGLQVFRKPVQCAGQGDRVGLSVVQFDADGMERGL-LCSA-AA--
eEFsec.Droso.SP KSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGI-ITQP-GY--
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su RTLVSTSQLIAQVHKV-RYHP-FLADTHTKFHITIGHATVMGTMR
gi|93569114|gb| --IPLLSSALISIEKV-RFYK-QQVNSKQQFHITIGHSTVIGTIT
gi|328869808|gb --VPLLNGAIISIEKV-RFYK-NLVKTNSHFHVTIGHTTTTAIVT
scaffold_30_sub --VKYVKGGIALVRKIIPHYKGPYLKNKSKYHVSVGHSTVMATVS
gi|340502432|gb --A-FTKYSIIPVNKV-NYFK-YPIKSKGKYHITTCHFTCMGSIK
contig_34_subse RALVSSSQLIARVHRV-RYHP-LPCDTHTKFHITIGHATVMGTMR
Lt_contig2959_s RMLMSSSQLIARVHRV-RYHP-LPCDTHTKFHITIGHATRMGTMR
PHYCAscaffold_1 --LTPVTQVVIPVTKV-PFFHEISCKSGGKCHVTVGHTTIIAMAT
Contig13961_sub ---------------------------------------------
supercont1.106_ --IPTAYAMICTANRV-RIYK-PELKSGTKFHVSVGHQTVMAEAQ
T.congo.pschr4_ --FESVSTLIAEVSRV-RFHQ-LACTIHTKFHITIGHSTVMGSMR
eEFsec.Droso.SP --LKPIYAVCLQFKPI-RYYK-EVIKSMRKMHISVGHNTVMANVT
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su YFSRPHVSAAA---GGSGDTFDPSVESAYVEEL--------AASD
gi|93569114|gb| LFSSNI-----------IEPFNSIKEYIYEDTLHATTIN--TSST
gi|328869808|gb FFEEETG---------SIHQFNEKIEYSFMEYLEPTSLE-YPVGS
scaffold_30_sub FWGGVSS---------TKTNGSNGNDQDNNGTIKNNKQKQPESLL
gi|340502432|gb LFKHEINIEEKEL-----------DKYEYVECY-DEYIK--KADE
contig_34_subse YFARPPRANESLDVPGTGASFDPSIESTYVEEL----------DD
Lt_contig2959_s YFARPPCMSEGLDVPGAVASFDSSIESAYVEEL----------DD
PHYCAscaffold_1 FFTCLGGDK------GDETGFNPSALYEYVEELSDEK--EAEEGM
Contig13961_sub ---------------------------------------------
supercont1.106_ FFGIVDDGGTD---EGSSGDFTFDRDYIHLAN------Y--AEAN
T.congo.pschr4_ FFSRPTVTEAGHAAPVEELKREAG-APVAVKY---------GPLT
eEFsec.Droso.SP LFRDTDGTT---------STFQLDKEYEYMEDVQPAEVQ--HNDV
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su FYAVLLLERPVLAAVGNAMVAMRLDVERD-NFCRIALAGS-----
gi|93569114|gb| QFALIKFDHPILCPLNSVVIGSKLDVNLDSTGCRIAFHGNLLEGI
gi|328869808|gb QFALIKFDHPVLCPLESVIIGSKLDVALDTSGCRIAFHGSLLQGI
scaffold_30_sub HWAILDFQTPVYCPLQSLIIGSRLDAPVEASSCRLAFCGR-----
gi|340502432|gb LFALIEFEKEMYASAGTLFICSKFDTDVSSNLCRLGFYGNALVAL
contig_34_subse YYAVLLLERPVLAAPGVSMIAMRLDVERE-NFCRIALAGT-----
Lt_contig2959_s YYAVLLLERPVLAAPGVSMIAMRLDVERE-NFCRIALAGT-----
PHYCAscaffold_1 IFALLQFEQAVFCPPKTLVVCSRMDLDAKRFPCRLAFYGVIQGVV
Contig13961_sub ---------------------------------------------
supercont1.106_ IYVLLNLAQPLLCPPDSLYIASRLDADINSKAVRLAFHGRISSLM
T.congo.pschr4_ YFAIVLLEKPVMAAVGTPLIATRLDVEQD-NMCRIAIAGSVRALL
eEFsec.Droso.SP IYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQT
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| DDTNKQ-SLFSKLKIYKNKS-------------------------
gi|328869808|gb DASNRQ-ILHDTLRIFKTKV-------------------------
scaffold_30_sub ---------------------------------------------
gi|340502432|gb VQGDFNK--DKKLKIFREKT-------------------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 GSREKFTLRLFKLMALKPPKLKGKATGPGQSLKTTVKAVEKDVES
Contig13961_sub ---------------------------------------------
supercont1.106_ ASPKYKADTLPRLLIYKRKF-------------------------
T.congo.pschr4_ HDEKADGASWRSLPIIRYKT-------------------------
eEFsec.Droso.SP HSSKYFQEELPKLRIFKRKQ-------------------------
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| -------------KQGQVERIHNENTIIGKN---LFKKDSDISSF
gi|328869808|gb -------------KEGAVERVHSEDTLIGKN---LFSKQTDLSSF
scaffold_30_sub ---------------------------------------------
gi|340502432|gb -------------REGTVEKVCDGFTIIIKD---MFKKETKIELF
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ISIDSSALRLAEPKSGQIERLKGETTAAAKKKHTLLRKQ------
Contig13961_sub ---------------------------------------------
supercont1.106_ -------------REGTVDRIVNANSLIGRG---LFKKETNIKIF
T.congo.pschr4_ -------------RTLVVERVVSDRSCIASG---VVTVEK-HEGG
eEFsec.Droso.SP -------------KVGSIQRVVNSSEVIVQN---LFKD-AKRDLY
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| IGMKVLFET-GEIGILDSSFGK-TGKVKIQIQTGLASNCIGNLKN
gi|328869808|gb IGMKVVFEN-GTVGVIDSSFGK-TGKIRILILPDCSPFTI----S
scaffold_30_sub ---------------------------------------------
gi|340502432|gb LNKSIYIENFGNVGKI-CAFGK-SGKIKALFSN------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 -----------------LAFNMHSVKVRINLKK----RQILTQRE
Contig13961_sub ---------------------------------------------
supercont1.106_ TGMKVTLST-GENGFIDGAFGQ-SGKFSVQIPGGLSEDTLNNL--
T.congo.pschr4_ TGGDTSSST-KKEGTIDSAFGK-TGKVKLIFN-------------
eEFsec.Droso.SP VGKNVELST-GEKGRIERTFGQ-TSKVAITFQDALSPETISNVKN
cons
gi|325181502|em -------------------G
Cf_Contig741_su -------------------V
gi|93569114|gb| ------------------VE
gi|328869808|gb ------------------SI
scaffold_30_sub -------------------L
gi|340502432|gb ------------------GI
contig_34_subse -------------------V
Lt_contig2959_s -------------------V
PHYCAscaffold_1 ------------------LF
Contig13961_sub -------------------L
supercont1.106_ ------------------GN
T.congo.pschr4_ -------------------E
eEFsec.Droso.SP VKVLLNCKKYVFNKQAGLFQ
cons