T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:4 sec.
SCORE=77
*
BAD AVG GOOD
*
gi|325181502|em : 78
Cf_Contig741_su : 65
gi|93569114|gb| : 76
gi|328874319|gb : 78
scaffold_30_sub : 78
gi|340502060|gb : 75
contig_34_subse : 79
Lt_contig2959_s : 80
PHYCAscaffold_1 : 78
T.congo.pschr4_ : 77
eEFsec.Celegans : 78
cons : 77
gi|325181502|em -------------VNIGTIGHVDHGKTTLTAALTKVLSEKGGAKF
Cf_Contig741_su VSAPPATSSVMLNVNVGLLGHVDSGKTALAKALSRTAS-------
gi|93569114|gb| -------------FNIGIMGHVDSGKTSLAKALSTNLS-------
gi|328874319|gb -------------VNVGTIGHVDHGKTTLTAAITKTLSDRGLANF
scaffold_30_sub T-SPPNPE-EVININVGILGHVDSGKTSLVKTLSTLLS-------
gi|340502060|gb -------------LNVGTIGHIDHGKTTLTAAITKILAQKQ-ATF
contig_34_subse -------------VNIGLLGHVDSGKTALAKALSSTAS-------
Lt_contig2959_s -------------VNIGLLGHVDSGKTALAKALSSTAS-------
PHYCAscaffold_1 -------------VNVGVLGHVDSGKTSLVRALSTQLS-------
T.congo.pschr4_ -----ETEAAPVNINIGILGHVDSGKTSLAKALSLTAS-------
eEFsec.Celegans MTSPPSTSSSVGPLNLGILGHVDSGKTTLTRRIAELGS-------
cons .*:* :**:* ***:*. :: :
gi|325181502|em TSYEDIDKAPEERA-RGI---TISTAHV------E-YETEKRHYA
Cf_Contig741_su --TAAFDKSPQSQS-RGI---TLDLGFS------ASANLDKVQCT
gi|93569114|gb| --TASLDKSPARFS-SFQ---IKKDKLAENN-NNNNDNNNNIQIT
gi|328874319|gb KSYAQIDKSPEERS-RGI---TITASHI------E-YESTNRHYA
scaffold_30_sub --TASLDKSKQSRQ-RDN---TNNNNNVVS--KSKSNKLKYLQMT
gi|340502060|gb -MEYSIDKAPEEKA-RGI---TINTATV------E-YETETRHYG
contig_34_subse --TAAFDKSPQSQS-RGI---TLDLGFS------A-ADLTKVQCT
Lt_contig2959_s --TAAFDKSPQSQS-RGI---TLDLGFS------ASADLTKLQCT
PHYCAscaffold_1 --TAALDKHPQSQQ-RGI---TLDLGFSSFLLKPSAQVKPCLQVT
T.congo.pschr4_ --TAAFDKSPESQR-RGI---TLDLGFS------ATCVSTHVQCT
eEFsec.Celegans --TSAFDAHATSTTTDGIRRNTLDLGFS------TMTSLSGRRLA
cons :* :
gi|325181502|em HVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLA
Cf_Contig741_su LVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVLG
gi|93569114|gb| LVDCPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVIG
gi|328874319|gb HIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILS
scaffold_30_sub LVDCPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVLA
gi|340502060|gb HVDCPGHIDYVKNMITGAAKMDAGILVCSATDGVMP-TREHILLC
contig_34_subse LVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLILG
Lt_contig2959_s LVDCPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVLG
PHYCAscaffold_1 LVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLA
T.congo.pschr4_ FVDCPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVIG
eEFsec.Celegans LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA
cons :***** .: :: . :* .:: . * * * :::
gi|325181502|em RQVGVPALVVFLNKVDQVDDEEL---LELVEMEIRELIPII-RGS
Cf_Contig741_su EVLAK-PLVVALNKVDAVQGATLAEKTAAVA-AMKRKLQLTFRRT
gi|93569114|gb| EITCK-KGIIILNKIDQIPVESRKEKIEQVSSKLRKALEKT-CFK
gi|328874319|gb REVGIPAIVVFLNKMDNADP-DL---VEIVEMEVRELLSKY-GFD
scaffold_30_sub ELTSS-TLIIALNKIDMFPIAEREQRLQEATQKVRERLKQSTKFN
gi|340502060|gb RV-GVNTIIVFVNKCDVAKDSEI---QELVEMEVRELLAKY-EYD
contig_34_subse EVLAK-PLVVVLNKMDAIQGASPAAKEAALA-ALKRKLQQVFRRT
Lt_contig2959_s EVLAK-PLVVVLNKVDAIQGATPEAKVAALA-ALRRKLQQTFRRT
PHYCAscaffold_1 TLIAKRSVVVALTKTDLVPSAERDNVIGKCSHEVRSFMATNFNFH
T.congo.pschr4_ EVLNK-PLVVVINKIDAVQGLTQAEQRANLD-KLRRRLRSAEGDA
eEFsec.Celegans SKFCPNRVIIVLNKCDLAEKSK----ISESAKKVRKGLKSMGVDE
cons :: :.* * :: :
gi|325181502|em ------------ALAAVEGRDHPIGRDAVLQLVEHVDNYIPDPVR
Cf_Contig741_su RWPT-VTVVEVA---AA-PRC-----CVLSISPH-----------
gi|93569114|gb| DSLI----IPFS---ATGGSSSG---GGSNSNKKELLNFINIPKR
gi|328874319|gb A--A-V------ALAEDDASATEYGRHAIDKLVEILDTKIPLPNR
scaffold_30_sub DPSQ-VPIIGVS---ACMGGE-----KAPSSSTSSTITKGSSTNS
gi|340502060|gb GE-K-SPVIFGSALCALNGTEKELGEDKV-VLLK-IMDEIPIP-R
contig_34_subse RWPT-VAIVEVA---AA-PRE------VLRAVDLAALKSAKESEA
Lt_contig2959_s RWPT-VAIVEVA---AA-PRE-----AVLRAVDLAALKAAKESEF
PHYCAscaffold_1 DTSS-IPVVPVA---VG-SNQDP---QGIPQLLEALNANLQVPER
T.congo.pschr4_ AVGGHCVPINVD---GV-LPA------ALRLVDVEAMKRQRD-AQ
eEFsec.Celegans NS----PIVEMS---LADGYFKE---EMLQNLKLAIESRIFEPKR
cons
gi|325181502|em DFEKPFLMPVEDVFSIAGRGTVVSGRVEHGVINAGDEVELVAA-N
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| EAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQL-N
gi|328874319|gb AIDKPFLMPVEEVFSISGRGTVATGRIEQGVVKVGDE--------
scaffold_30_sub NSNSNFYFAIDHCFPIKGMGTVLTGTCLNGSINVNDIIEFPSLGN
gi|340502060|gb LTDKPFLMSIEGTY-IAGRGTVVTGTVDAGKVKVGEDV-------
contig_34_subse ERPAQFYMLVDHCFAVRGQGTVFTGTVVAGVVRVGDTVLVPEL-Q
Lt_contig2959_s ERPAQFYMLVDHCFPVRGQGTVFTGTVVAGVVRVGDTVLVPEM-Q
PHYCAscaffold_1 DHSGSFCLAVDHCFSVPGNGTILTGTVLSGALERGDELELLPL-G
T.congo.pschr4_ HRPEDLVMMVDHCFALKGQGTVFTGTILRGKVSVGDSILIPES-Q
eEFsec.Celegans DEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPAL-N
cons
gi|325181502|em EKKC-----------------------------------------
Cf_Contig741_su -----------RRPKRARESGRSASTCLS-TTASPCGGRGR-CSP
gi|93569114|gb| IEKKVKSMQMFHKPIKKAIQGDRVGVCIT-QLDSSLLERGLVC-S
gi|328874319|gb ---------------------------------------------
scaffold_30_sub LQRKVKSIQMFKRRCLKIQQGDRAGICVS-NFDSTSLERGVCS-T
gi|340502060|gb ---------------------------------------------
contig_34_subse TTRKVKGLQVFHKPVEMAQSGDRVGLCVA-QFDPTWMERGVLCSA
Lt_contig2959_s TTRKVKGLQMFHKPVESAKSGDRVGLCV-----------------
PHYCAscaffold_1 AKVKVKTLQVFKKDVAKCSQGDRVGLRVN-GLDPALVERALAVSP
T.congo.pschr4_ VVKKVKGLQVFRKPVQCAGQGDRVGLSVV-QFDADGMERGLLCSA
eEFsec.Celegans EKRRVKTLETWKQRVGQVAAGARAAFLVAPSFDEHRFSRCICG-P
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ARSWRAWCASATQFSCLICRR-RG-RRACRFSTSQRRPAAVIAWA
gi|93569114|gb| NNS---IPLLSSALISIEKVR-FY-KQQ-----------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub PGS---VKYVKGGIALVRKIIPHYKGPY-----------------
gi|340502060|gb ---------------------------------------------
contig_34_subse ASSGRALVSSSQLIARVHRVR-YH-PLP-----------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 PGS---LTPVTQVVIPVTKVP-FFHEIS-----------------
T.congo.pschr4_ A-A---FESVSTLIAEVSRVR-FH-QLA-----------------
eEFsec.Celegans LGT---LKSTKFVLATVEPIQ-FF-RKS-----------------
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su SVLRNSTLPRWSVGCFAARPAASAHLSAPRSSLRRCTRCATTLFS
gi|93569114|gb| -----------------VNSKQQFHITIGHST-------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub -----------------LKNKSKYHVSVGHST-------------
gi|340502060|gb ---------------------------------------------
contig_34_subse -----------------CDTHTKFHITIGHAT-------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 -----------------CKSGGKCHVTVGHTT-------------
T.congo.pschr4_ -----------------CTIHTKFHITIGHST-------------
eEFsec.Celegans -----------------INSKSKIHVAVAFET-------------
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su PTRTPSFTRSAMQRW------------G-----------------
gi|93569114|gb| -------V-------------------------------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub -------VMATVSFWGA----------------------------
gi|340502060|gb ---------------------------------------------
contig_34_subse -------VMGTM---------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 -------IIAMATFFTCLDNGTTWLLP------------------
T.congo.pschr4_ -------VMGSMRFFSRPTRGVFLLLGS-----------------
eEFsec.Celegans -------VMAECQFLKEKENGEFEMLPSLLAPCQVLFSFEKSIFL
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| ---------------------------------------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub ---------------------------------------------
gi|340502060|gb ---------------------------------------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
T.congo.pschr4_ ---------------------------------------------
eEFsec.Celegans PENYSNPFMAARLEQQPGSGCRFAFSGIFSQILPENGKNLPPRFT
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| ---------------------------------------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub ---------------------------------------------
gi|340502060|gb ---------------------------------------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
T.congo.pschr4_ ---------------------------------------------
eEFsec.Celegans RKCRKGHVERVEKDGFSAICTGMFKAETNFDVFRGFQICTSSGPR
cons
gi|325181502|em ---------------------------------------------
Cf_Contig741_su ---------------------------------------------
gi|93569114|gb| ---------------------------------------------
gi|328874319|gb ---------------------------------------------
scaffold_30_sub ---------------------------------------------
gi|340502060|gb ---------------------------------------------
contig_34_subse ---------------------------------------------
Lt_contig2959_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
T.congo.pschr4_ ---------------------------------------------
eEFsec.Celegans GKIEGAFGKSGKFRVTFAEKIDGILTEKEEISLFLKKYHNENRLV
cons
gi|325181502|em ----V
Cf_Contig741_su --RCA
gi|93569114|gb| ----I
gi|328874319|gb ----V
scaffold_30_sub ---KE
gi|340502060|gb ----D
contig_34_subse ---RY
Lt_contig2959_s ----A
PHYCAscaffold_1 ---SL
T.congo.pschr4_ --QIA
eEFsec.Celegans SYVPD
cons