T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=77
*
 BAD AVG GOOD
*
gi|325181502|em   :  78
Cf_Contig741_su   :  65
gi|93569114|gb|   :  76
gi|328874319|gb   :  78
scaffold_30_sub   :  78
gi|340502060|gb   :  75
contig_34_subse   :  79
Lt_contig2959_s   :  80
PHYCAscaffold_1   :  78
T.congo.pschr4_   :  77
eEFsec.Celegans   :  78
cons              :  77

gi|325181502|em   -------------VNIGTIGHVDHGKTTLTAALTKVLSEKGGAKF
Cf_Contig741_su   VSAPPATSSVMLNVNVGLLGHVDSGKTALAKALSRTAS-------
gi|93569114|gb|   -------------FNIGIMGHVDSGKTSLAKALSTNLS-------
gi|328874319|gb   -------------VNVGTIGHVDHGKTTLTAAITKTLSDRGLANF
scaffold_30_sub   T-SPPNPE-EVININVGILGHVDSGKTSLVKTLSTLLS-------
gi|340502060|gb   -------------LNVGTIGHIDHGKTTLTAAITKILAQKQ-ATF
contig_34_subse   -------------VNIGLLGHVDSGKTALAKALSSTAS-------
Lt_contig2959_s   -------------VNIGLLGHVDSGKTALAKALSSTAS-------
PHYCAscaffold_1   -------------VNVGVLGHVDSGKTSLVRALSTQLS-------
T.congo.pschr4_   -----ETEAAPVNINIGILGHVDSGKTSLAKALSLTAS-------
eEFsec.Celegans   MTSPPSTSSSVGPLNLGILGHVDSGKTTLTRRIAELGS-------

cons                           .*:* :**:* ***:*.  ::         


gi|325181502|em   TSYEDIDKAPEERA-RGI---TISTAHV------E-YETEKRHYA
Cf_Contig741_su   --TAAFDKSPQSQS-RGI---TLDLGFS------ASANLDKVQCT
gi|93569114|gb|   --TASLDKSPARFS-SFQ---IKKDKLAENN-NNNNDNNNNIQIT
gi|328874319|gb   KSYAQIDKSPEERS-RGI---TITASHI------E-YESTNRHYA
scaffold_30_sub   --TASLDKSKQSRQ-RDN---TNNNNNVVS--KSKSNKLKYLQMT
gi|340502060|gb   -MEYSIDKAPEEKA-RGI---TINTATV------E-YETETRHYG
contig_34_subse   --TAAFDKSPQSQS-RGI---TLDLGFS------A-ADLTKVQCT
Lt_contig2959_s   --TAAFDKSPQSQS-RGI---TLDLGFS------ASADLTKLQCT
PHYCAscaffold_1   --TAALDKHPQSQQ-RGI---TLDLGFSSFLLKPSAQVKPCLQVT
T.congo.pschr4_   --TAAFDKSPESQR-RGI---TLDLGFS------ATCVSTHVQCT
eEFsec.Celegans   --TSAFDAHATSTTTDGIRRNTLDLGFS------TMTSLSGRRLA

cons                   :*                                   :  


gi|325181502|em   HVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLA
Cf_Contig741_su   LVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVLG
gi|93569114|gb|   LVDCPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVIG
gi|328874319|gb   HIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILS
scaffold_30_sub   LVDCPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVLA
gi|340502060|gb   HVDCPGHIDYVKNMITGAAKMDAGILVCSATDGVMP-TREHILLC
contig_34_subse   LVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLILG
Lt_contig2959_s   LVDCPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVLG
PHYCAscaffold_1   LVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLA
T.congo.pschr4_   FVDCPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVIG
eEFsec.Celegans   LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA

cons               :*****   .: :: .   :*  .:: .   *    * * ::: 


gi|325181502|em   RQVGVPALVVFLNKVDQVDDEEL---LELVEMEIRELIPII-RGS
Cf_Contig741_su   EVLAK-PLVVALNKVDAVQGATLAEKTAAVA-AMKRKLQLTFRRT
gi|93569114|gb|   EITCK-KGIIILNKIDQIPVESRKEKIEQVSSKLRKALEKT-CFK
gi|328874319|gb   REVGIPAIVVFLNKMDNADP-DL---VEIVEMEVRELLSKY-GFD
scaffold_30_sub   ELTSS-TLIIALNKIDMFPIAEREQRLQEATQKVRERLKQSTKFN
gi|340502060|gb   RV-GVNTIIVFVNKCDVAKDSEI---QELVEMEVRELLAKY-EYD
contig_34_subse   EVLAK-PLVVVLNKMDAIQGASPAAKEAALA-ALKRKLQQVFRRT
Lt_contig2959_s   EVLAK-PLVVVLNKVDAIQGATPEAKVAALA-ALRRKLQQTFRRT
PHYCAscaffold_1   TLIAKRSVVVALTKTDLVPSAERDNVIGKCSHEVRSFMATNFNFH
T.congo.pschr4_   EVLNK-PLVVVINKIDAVQGLTQAEQRANLD-KLRRRLRSAEGDA
eEFsec.Celegans   SKFCPNRVIIVLNKCDLAEKSK----ISESAKKVRKGLKSMGVDE

cons                      :: :.* *                 ::  :       


gi|325181502|em   ------------ALAAVEGRDHPIGRDAVLQLVEHVDNYIPDPVR
Cf_Contig741_su   RWPT-VTVVEVA---AA-PRC-----CVLSISPH-----------
gi|93569114|gb|   DSLI----IPFS---ATGGSSSG---GGSNSNKKELLNFINIPKR
gi|328874319|gb   A--A-V------ALAEDDASATEYGRHAIDKLVEILDTKIPLPNR
scaffold_30_sub   DPSQ-VPIIGVS---ACMGGE-----KAPSSSTSSTITKGSSTNS
gi|340502060|gb   GE-K-SPVIFGSALCALNGTEKELGEDKV-VLLK-IMDEIPIP-R
contig_34_subse   RWPT-VAIVEVA---AA-PRE------VLRAVDLAALKSAKESEA
Lt_contig2959_s   RWPT-VAIVEVA---AA-PRE-----AVLRAVDLAALKAAKESEF
PHYCAscaffold_1   DTSS-IPVVPVA---VG-SNQDP---QGIPQLLEALNANLQVPER
T.congo.pschr4_   AVGGHCVPINVD---GV-LPA------ALRLVDVEAMKRQRD-AQ
eEFsec.Celegans   NS----PIVEMS---LADGYFKE---EMLQNLKLAIESRIFEPKR

cons                                                           


gi|325181502|em   DFEKPFLMPVEDVFSIAGRGTVVSGRVEHGVINAGDEVELVAA-N
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   EAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQL-N
gi|328874319|gb   AIDKPFLMPVEEVFSISGRGTVATGRIEQGVVKVGDE--------
scaffold_30_sub   NSNSNFYFAIDHCFPIKGMGTVLTGTCLNGSINVNDIIEFPSLGN
gi|340502060|gb   LTDKPFLMSIEGTY-IAGRGTVVTGTVDAGKVKVGEDV-------
contig_34_subse   ERPAQFYMLVDHCFAVRGQGTVFTGTVVAGVVRVGDTVLVPEL-Q
Lt_contig2959_s   ERPAQFYMLVDHCFPVRGQGTVFTGTVVAGVVRVGDTVLVPEM-Q
PHYCAscaffold_1   DHSGSFCLAVDHCFSVPGNGTILTGTVLSGALERGDELELLPL-G
T.congo.pschr4_   HRPEDLVMMVDHCFALKGQGTVFTGTILRGKVSVGDSILIPES-Q
eEFsec.Celegans   DEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPAL-N

cons                                                           


gi|325181502|em   EKKC-----------------------------------------
Cf_Contig741_su   -----------RRPKRARESGRSASTCLS-TTASPCGGRGR-CSP
gi|93569114|gb|   IEKKVKSMQMFHKPIKKAIQGDRVGVCIT-QLDSSLLERGLVC-S
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   LQRKVKSIQMFKRRCLKIQQGDRAGICVS-NFDSTSLERGVCS-T
gi|340502060|gb   ---------------------------------------------
contig_34_subse   TTRKVKGLQVFHKPVEMAQSGDRVGLCVA-QFDPTWMERGVLCSA
Lt_contig2959_s   TTRKVKGLQMFHKPVESAKSGDRVGLCV-----------------
PHYCAscaffold_1   AKVKVKTLQVFKKDVAKCSQGDRVGLRVN-GLDPALVERALAVSP
T.congo.pschr4_   VVKKVKGLQVFRKPVQCAGQGDRVGLSVV-QFDADGMERGLLCSA
eEFsec.Celegans   EKRRVKTLETWKQRVGQVAAGARAAFLVAPSFDEHRFSRCICG-P

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ARSWRAWCASATQFSCLICRR-RG-RRACRFSTSQRRPAAVIAWA
gi|93569114|gb|   NNS---IPLLSSALISIEKVR-FY-KQQ-----------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   PGS---VKYVKGGIALVRKIIPHYKGPY-----------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   ASSGRALVSSSQLIARVHRVR-YH-PLP-----------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   PGS---LTPVTQVVIPVTKVP-FFHEIS-----------------
T.congo.pschr4_   A-A---FESVSTLIAEVSRVR-FH-QLA-----------------
eEFsec.Celegans   LGT---LKSTKFVLATVEPIQ-FF-RKS-----------------

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   SVLRNSTLPRWSVGCFAARPAASAHLSAPRSSLRRCTRCATTLFS
gi|93569114|gb|   -----------------VNSKQQFHITIGHST-------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   -----------------LKNKSKYHVSVGHST-------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   -----------------CDTHTKFHITIGHAT-------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   -----------------CKSGGKCHVTVGHTT-------------
T.congo.pschr4_   -----------------CTIHTKFHITIGHST-------------
eEFsec.Celegans   -----------------INSKSKIHVAVAFET-------------

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   PTRTPSFTRSAMQRW------------G-----------------
gi|93569114|gb|   -------V-------------------------------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   -------VMATVSFWGA----------------------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   -------VMGTM---------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   -------IIAMATFFTCLDNGTTWLLP------------------
T.congo.pschr4_   -------VMGSMRFFSRPTRGVFLLLGS-----------------
eEFsec.Celegans   -------VMAECQFLKEKENGEFEMLPSLLAPCQVLFSFEKSIFL

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   ---------------------------------------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   ---------------------------------------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
T.congo.pschr4_   ---------------------------------------------
eEFsec.Celegans   PENYSNPFMAARLEQQPGSGCRFAFSGIFSQILPENGKNLPPRFT

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   ---------------------------------------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   ---------------------------------------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
T.congo.pschr4_   ---------------------------------------------
eEFsec.Celegans   RKCRKGHVERVEKDGFSAICTGMFKAETNFDVFRGFQICTSSGPR

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   ---------------------------------------------
gi|328874319|gb   ---------------------------------------------
scaffold_30_sub   ---------------------------------------------
gi|340502060|gb   ---------------------------------------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
T.congo.pschr4_   ---------------------------------------------
eEFsec.Celegans   GKIEGAFGKSGKFRVTFAEKIDGILTEKEEISLFLKKYHNENRLV

cons                                                           


gi|325181502|em   ----V
Cf_Contig741_su   --RCA
gi|93569114|gb|   ----I
gi|328874319|gb   ----V
scaffold_30_sub   ---KE
gi|340502060|gb   ----D
contig_34_subse   ---RY
Lt_contig2959_s   ----A
PHYCAscaffold_1   ---SL
T.congo.pschr4_   --QIA
eEFsec.Celegans   SYVPD

cons