TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|67191194|ref|NP_001019905.1| selenoprotein S [Gallus gallus] (194 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.11 34 0.041 T.congo.pschr.8 33 0.091 T.congo.pschr.5 32 0.20 T.congo.pschr4 32 0.26 T.congo.pschr.9 28 2.2 TcIL3000_10_v2.embl 28 2.9 T.congo.pschr.7 27 6.5 T.congo.pschr.3. 27 8.5 >T.congo.pschr.11 Length = 4797796 Score = 34.3 bits (77), Expect = 0.041 Identities = 28/101 (27%), Positives = 51/101 (50%) Frame = +2 Query: 44 ACVAIYLIVQKISPYLRMRPSSQQGATGAAVEPDMVVRRQEALLASRLRMQEELNAQAER 103 +C IY +V +S Q A A VE + + R EA +R + E+ A + Sbjct: 2509337 SCDGIYHVVVSLS----------QCARAAVVERESLQTRSEA---ARRELLHEVKALRD- 2509474 Query: 104 YKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQEAE 144 Q E+Q++R+++EMW+ ++ + +L+L Q++AE Sbjct: 2509475 ----QLASEQQEQRRRVEMWQ--EKASAADVHLRLCQRQAE 2509579 Score = 30.4 bits (67), Expect = 0.59 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 79 VVRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKR 116 V R +E ++A R + EE+N YKEK +Q E + R Sbjct: 3841674 VERLEEHVVAVRTTLTEEMNVLTIEYKEKLKQKETENR 3841561 Score = 29.3 bits (64), Expect = 1.3 Identities = 19/78 (24%), Positives = 37/78 (47%) Frame = +1 Query: 80 VRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLS 139 +RR+ LL L ++ +A+ + ++R+LEE+ R++ E M+E + Sbjct: 326641 IRRKMELLRWNLSPEQAATIRAQGLERQRRRLEEEAVRRRANEEEEMKECTFRPQPARKI 326820 Query: 140 QQEAESGASTSSAVPKSK 157 E SG T V +++ Sbjct: 326821 PNECRSGRYTDVRVTRAE 326874 Score = 28.5 bits (62), Expect = 2.2 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = +2 Query: 147 ASTSSAVPKSKP--NKKPLR------GGGYNPLSGEGGGTCSWRPGRRGPS 189 A+ S A+P + NKK LR G G T WRPGR PS Sbjct: 2772779 AAGSKALPSTHTIFNKKSLRHTTAVSSGAVRQAVGSSARTLQWRPGRLQPS 2772931 Score = 27.3 bits (59), Expect = 5.0 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Frame = -3 Query: 90 RLRMQEELNAQAERYKEKQRQ--LEEQKRRQKI--EMWESMQEGKSYKGNLKLSQQE 142 RLR++EE Q +E++RQ L+E++ RQ + E ++ K + L+L ++E Sbjct: 4414772 RLRLKEEEERQLRLIEEEKRQLRLKEEEERQSLLREEEHRLRLKKEEERQLRLKEEE 4414602 Score = 27.3 bits (59), Expect = 5.0 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 76 PDMVVRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQK 119 PD V +QEA L + +E+ + + E RQ +E+++RQK Sbjct: 1085455 PDTVQAKQEAFLRLSKQEKEDEDRRKLMMIEFNRQQQEEEQRQK 1085586 >T.congo.pschr.8 Length = 2451971 Score = 33.1 bits (74), Expect = 0.091 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -3 Query: 79 VVRRQEALLASRLRMQEELNA-QAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLK 137 +VRRQ+ L +RLR +E L A QA++ + + +RR K E ++ NL+ Sbjct: 1045044 IVRRQKMQLEARLRREEVLKAEQAQKLMDLKTSSLNLERRLKREEEVTLASMNEQLMNLQ 1044865 Query: 138 LSQQEAESGASTSSAV 153 +Q E+ S +S+V Sbjct: 1044864 TQRQHLENYLSENSSV 1044817 Score = 29.6 bits (65), Expect = 1.0 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%) Frame = -1 Query: 80 VRRQEALLASRLRMQEELNAQAE------------RYKEKQRQLEEQKRRQKIEMWESMQ 127 V QE +LA RLR QEE + + + R +EK + + Q + ++ E+ Q Sbjct: 1519094 VLEQERVLAERLRAQEETHMKEQESLKEFCVQELARLQEKVKGTQSQLEEAQKQLEENRQ 1518915 Query: 128 EGKSYKGNLKLSQ 140 KS KG K++Q Sbjct: 1518914 --KSLKGEGKVAQ 1518882 Score = 29.3 bits (64), Expect = 1.3 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = -2 Query: 77 DMVVRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNL 136 +M+ R +E LLA + +++EE+NA+ Y + R Q+GK+ Sbjct: 278554 EMLKREREELLAVQAKVEEEMNARIPGYSKSGR-------------CTPFQQGKAKSMEF 278414 Query: 137 KLSQQEAESGASTSSAV 153 + + SG S+V Sbjct: 278413 SVGSRRPASGLKRQSSV 278363 >T.congo.pschr.5 Length = 1517473 Score = 32.0 bits (71), Expect = 0.20 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +3 Query: 84 EALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQEA 143 E ++LR +L+ Q E + + RQLEEQ R K E+ ++ + S +G+ + ++ A Sbjct: 500100 EGKYLNQLRRARQLSVQLESERTRGRQLEEQLRALKTELQKNGAQ-SSDEGSKEARRRPA 500276 Query: 144 ESGASTSSAVPKSKPNKKPLR 164 G T+S + + N LR Sbjct: 500277 ARG--TTSEADEEQQNLTNLR 500333 Score = 26.6 bits (57), Expect = 8.5 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 165 GGGYNPLSGEGGGTCSWRPGRR 186 GGG +G GG+C W+PG R Sbjct: 1058694 GGGVG--AGRFGGSCCWQPGPR 1058635 >T.congo.pschr4 Length = 1343510 Score = 31.6 bits (70), Expect = 0.26 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = -2 Query: 52 VQKISPYLRMRPSSQQGAT--GAAVEPDMVVRRQEALLASRLRMQEELNAQAERYKEKQR 109 + K S + P AT A+E ++RR+ ++ SRL+ EE++ +A+ + + Q Sbjct: 792367 IAKTSSRTALPPMPITSATQLSVALEQYTLLRREYKIIYSRLKRLEEVSDEAQGWCQSQG 792188 Query: 110 QLEEQKRRQKIEMWESMQEGKSYK 133 ++ +++ W QEG K Sbjct: 792187 ARFTKELNVELQNWFERQEGPRSK 792116 Score = 28.5 bits (62), Expect = 2.2 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 164 RGGGYNPLSGEGGGTCSWRPGRRGPSAGG 192 RGGGY+ G G CS P R G ++ G Sbjct: 524439 RGGGYDCWVGHHGAFCSEAPTRTGGASAG 524525 Score = 28.5 bits (62), Expect = 2.2 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = -3 Query: 164 RGGGYNPLSGEGGGTCSWRPGRRGPSAGGXG 194 +GGG L GG T WR G PSAGG G Sbjct: 807153 KGGGVGWL---GGPTDVWRQGGDTPSAGGAG 807070 >T.congo.pschr.9 Length = 2092392 Score = 28.5 bits (62), Expect = 2.2 Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = -3 Query: 80 VRRQEALLASRLR-MQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKL 138 + + +L S +R ++E+ A RY+E+ +LEE+ R + + E++ K +G L+ Sbjct: 1764001 LNERNGVLESEVRTLEEQAKQDAMRYEEEMTRLEERHRLEVSALNENL---KLLEGALEA 1763831 Query: 139 SQQEAESGAST 149 ++E ++ A + Sbjct: 1763830 KEEEHQTLAQS 1763798 Score = 27.7 bits (60), Expect = 3.8 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Frame = +2 Query: 102 ERYKEKQRQLEEQKRRQKIEMWESMQEGKS---------YKGNLKLSQQEAESGASTSSA 152 +R +E + + + +K + W +E K K N K + +STS + Sbjct: 122969 QREEENKNGIHDNNGMRKTKQWRHDEENKRKHTRH*WK*IK*NKKNNIPSFPRVSSTSHS 123148 Query: 153 VPKSKPNKKPLRGG 166 + + +K+PLRGG Sbjct: 123149 ITRRNLHKQPLRGG 123190 Score = 27.3 bits (59), Expect = 5.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 137 KLSQQEAESGASTSSAVPKSKPNKKPLRGGGYNPLSGEGGGTCSWRPG 184 KLS + G + + PNK P GGG +SG+ +C R G Sbjct: 1797285 KLSPLQVTQGTTATVTTCTGAPNKWPSGGGG---ISGKSDASCINRGG 1797151 Score = 26.9 bits (58), Expect = 6.5 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +2 Query: 95 EELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLK 137 EE+N Q + E++RQL+ + +E E + + K +G+ + Sbjct: 368756 EEMNTQQKEIAERRRQLDMELYEGNVERIEEILQLKDNRGDAR 368884 Score = 26.9 bits (58), Expect = 6.5 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = -2 Query: 127 QEGKSYKGNLKLSQQEAES---GASTSSAVPKSKPN------KKPLRGGGYNPLSGEGGG 177 QE +++G + SQ EA G++T S +P+ ++P G++ GEG Sbjct: 500507 QEAVTHQGTRR-SQLEAPRSACGSATRSPAAPQRPSA*RS*WRRPYVHNGHHDQYGEGSF 500331 Query: 178 TCSW 181 CSW Sbjct: 500330 LCSW 500319 >TcIL3000_10_v2.embl Length = 3612457 Score = 28.1 bits (61), Expect = 2.9 Identities = 24/95 (25%), Positives = 39/95 (41%) Frame = +3 Query: 81 RRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQ 140 RR+ AL R++EE +R++ + R ++ W+ M Sbjct: 1232925 RRERALREELFRVREETELL-------EREVARELSRSRVTKWQEM-------------- 1233041 Query: 141 QEAESGASTSSAVPKSKPNKKPLRGGGYNPLSGEG 175 A+ +S PKS P+ GGG++P S EG Sbjct: 1233042 -----CATQASITPKSFPS-----GGGHSPPSVEG 1233116 Score = 26.6 bits (57), Expect = 8.5 Identities = 11/29 (37%), Positives = 12/29 (41%) Frame = -3 Query: 166 GGYNPLSGEGGGTCSWRPGRRGPSAGGXG 194 GG+ G GGG W G GG G Sbjct: 2325566 GGWGSGGGRGGGGSGWGSGGNSRGGGGRG 2325480 >T.congo.pschr.7 Length = 2148087 Score = 26.9 bits (58), Expect = 6.5 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -1 Query: 82 RQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIE 121 R E A+ L+ +++L +A + + R+ EEQ+RRQ E Sbjct: 1962090 RPELPTAAELQKRQQLRDKARQERLAARKKEEQERRQNEE 1961971 >T.congo.pschr.3. Length = 1451265 Score = 26.6 bits (57), Expect = 8.5 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Frame = -3 Query: 44 ACVAIYLIVQKISPYLRMRPSSQQGATGAAVEPDMVVRRQEALLASRLRMQEELNAQAER 103 +CV I+L + PY S G G +E +R+ L LR A A Sbjct: 492475 SCVPIFLEGTRNQPYHEHFLPSVSGEAGTTIETPEYCQRRSDLTDHFLRQVFGGEASANL 492296 Query: 104 YKEKQRQLEE------QKRRQK 119 E++R ++ QKRR++ Sbjct: 492295 SPERRRAFKQLGFPQRQKRRRR 492230 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.311 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,918,961 Number of Sequences: 11 Number of extensions: 69489 Number of successful extensions: 459 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 255 Number of HSP's gapped (non-prelim): 402 length of query: 194 length of database: 7,429,315 effective HSP length: 92 effective length of query: 102 effective length of database: 7,428,303 effective search space: 757686906 effective search space used: 757686906 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 56 (26.2 bits)