TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|67191194|ref|NP_001019905.1| selenoprotein S [Gallus gallus]
         (194 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340506985|gb|GL983521.1| Ichthyophthirius multifiliis unplace...    29   2.7  
gi|340501650|gb|GL984247.1| Ichthyophthirius multifiliis unplace...    28   7.8  

>gi|340506985|gb|GL983521.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250296, whole genome shotgun
             sequence
          Length = 79067

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 10/27 (37%), Positives = 21/27 (77%)
 Frame = +1

Query: 94    QEELNAQAERYKEKQRQLEEQKRRQKI 120
             +++   Q E+Y+EKQ + +E+K+++KI
Sbjct: 46696 EKQKEKQEEKYEEKQEEKQEEKQKEKI 46776



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 100   QAERYKEKQRQLEEQK------RRQKIEMWESMQEGKSYKGNLKLSQQEAESGASTSSAV 153
             Q E+Y+EKQ + +E+K       +QK +  +  +E +  K   K  + + E         
Sbjct: 46486 QEEKYEEKQEENKEEK*EENQEEKQKKKQEKKQEENQEEKYEEKQEENKEEK*EENQEEK 46665

Query: 154   PKSKPNKK 161
              K K  KK
Sbjct: 46666 QKKKQEKK 46689



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 83    QEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQE 142
             QE     +   ++E N Q E+Y+EKQ + +E+K  +  E  +  ++ K  +   K  Q+E
Sbjct: 46546 QEEKQKKKQEKKQEEN-QEEKYEEKQEENKEEK*EENQEEKQKKKQEKKQEEKQKEKQEE 46722


>gi|340501650|gb|GL984247.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251286, whole genome shotgun
             sequence
          Length = 122534

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -2

Query: 92    RMQEELNAQAERYKEKQ---RQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQEAESGAS 148
             + +E+     + YKEK+   + L+E+K+++K    +  +  K  K   K  +   E    
Sbjct: 38170 KKKEDKKKNKKNYKEKKKNKKDLKEKKKKKKDLKDKKGKSKKDLKEKKKNKKDLKEKKGK 37991

Query: 149   TSSAVPKSKPNKKPLR 164
                 + + K NKK L+
Sbjct: 37990 NKKCLIEKKKNKKDLK 37943


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.311    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,183,887
Number of Sequences: 2017
Number of extensions: 60158
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 54
length of query: 194
length of database: 16,266,656
effective HSP length: 97
effective length of query: 97
effective length of database: 16,071,007
effective search space: 1558887679
effective search space used: 1558887679
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)