TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|67191194|ref|NP_001019905.1| selenoprotein S [Gallus gallus] (194 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325187405|emb|FR824184.1| Albugo laibachii Nc14, genomic cont... 31 0.62 gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont... 30 1.1 gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic cont... 30 1.1 gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic cont... 30 1.1 gi|325186956|emb|FR824170.1| Albugo laibachii Nc14, genomic cont... 30 1.4 gi|325188691|emb|FR824231.1| Albugo laibachii Nc14, genomic cont... 29 1.8 gi|325184277|emb|FR824101.1| Albugo laibachii Nc14, genomic cont... 29 2.4 gi|325194341|emb|FR825182.1| Albugo laibachii Nc14, genomic cont... 29 2.4 gi|325182412|emb|FR824072.1| Albugo laibachii Nc14, genomic cont... 28 3.1 gi|325185797|emb|FR824136.1| Albugo laibachii Nc14, genomic cont... 28 3.1 gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic cont... 28 5.2 gi|325192095|emb|FR824431.1| Albugo laibachii Nc14, genomic cont... 28 5.2 gi|325195018|emb|FR825815.1| Albugo laibachii Nc14, genomic cont... 27 6.9 gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic cont... 27 9.0 gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont... 27 9.0 gi|325189158|emb|FR824248.1| Albugo laibachii Nc14, genomic cont... 27 9.0 gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic cont... 27 9.0 gi|325192759|emb|FR824511.1| Albugo laibachii Nc14, genomic cont... 27 9.0 >gi|325187405|emb|FR824184.1| Albugo laibachii Nc14, genomic contig CONTIG_139_NC14_v4_67358_243 Length = 67358 Score = 30.8 bits (68), Expect = 0.62 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 94 QEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQE 142 QEE E ++QRQ+E++++ ++ E E + + + LKL+Q+E Sbjct: 29040 QEEKERNEEMEAQRQRQMEQREKEKQREREEFQRRKEQQEFALKLAQEE 28894 >gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig CONTIG_2_NC14_v4_395950_240 Length = 395950 Score = 30.0 bits (66), Expect = 1.1 Identities = 20/36 (55%), Positives = 24/36 (66%) Frame = -3 Query: 82 RQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRR 117 R EALLA+RLR Q+ L E KEKQ + E+KRR Sbjct: 231206 RDEALLAARLRQQQSL---LEASKEKQDR--EKKRR 231114 >gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic contig CONTIG_74_NC14_v4_95633_241 Length = 95633 Score = 30.0 bits (66), Expect = 1.1 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +1 Query: 81 RRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLK--- 137 R+QE LL+S + ++ +A +R+ +Q Q + + KIE G+ K +K Sbjct: 49297 RKQEGLLSSLVVWRKYQDAGFKRHIRRQMQARAAQVKVKIE------SGRRCKARMKEVP 49458 Query: 138 -LSQQEAESGASTSS 151 ++ EAE+ +STSS Sbjct: 49459 KRAKTEAENSSSTSS 49503 >gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic contig CONTIG_101_NC14_v4_78707_237 Length = 78707 Score = 30.0 bits (66), Expect = 1.1 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Frame = +2 Query: 110 QLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQEAESGASTSS-------AVPKSKPNKKP 162 + E+++ +K E+ +E + G K ++ G T+ A PK+ P P Sbjct: 43199 ECEDEEEEEK----ENDEEQPGFGGGGKTKKETTTGGGGTTKEVTTAGDAAPKATPGTGP 43366 Query: 163 LRGGGYNPLSGEGGGTCSWRPGRRGP 188 GGG +G GGT P P Sbjct: 43367 SGGGGTPSGTGGTGGTPIGNPSSNLP 43444 >gi|325186956|emb|FR824170.1| Albugo laibachii Nc14, genomic contig CONTIG_125_NC14_v4_70474_256 Length = 70474 Score = 29.6 bits (65), Expect = 1.4 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Frame = -1 Query: 25 LLQHTVGALLSSYGWYILLAC---VAIYLIVQK 54 L++H V + SY +YI +AC V++Y I+Q+ Sbjct: 1996 LVRHNVASACKSYAYYIRMACPLIVSMYSIIQR 1898 >gi|325188691|emb|FR824231.1| Albugo laibachii Nc14, genomic contig CONTIG_186_NC14_v4_50771_231 Length = 50771 Score = 29.3 bits (64), Expect = 1.8 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Frame = -1 Query: 98 NAQAERYK---EKQRQLEEQKRRQKIEMWESMQE--------GKSYKGNLKLSQQEAESG 146 N + YK ++ R++E QKR+Q + WE Q+ GKS K ++ +++ E G Sbjct: 9773 NRKIAHYKGNYDQFREMELQKRKQMEKAWEKQQKQLRNLKASGKSSKKATEIVKKKREPG 9594 Query: 147 A 147 A Sbjct: 9593 A 9591 >gi|325184277|emb|FR824101.1| Albugo laibachii Nc14, genomic contig CONTIG_56_NC14_v4_108009_226 Length = 108009 Score = 28.9 bits (63), Expect = 2.4 Identities = 21/100 (21%), Positives = 43/100 (43%) Frame = +3 Query: 62 RPSSQQGATGAAVEPDMVVRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIE 121 +P + Q + + +RQ+ + RL++Q + Q ++ + QRQ Q + Q Sbjct: 75666 QPQTTQAQQNHQYQQQLQQQRQQQMQQQRLQIQRQ--QQQQQQMQMQRQQLLQHKSQSAS 75839 Query: 122 MWESMQEGKSYKGNLKLSQQEAESGASTSSAVPKSKPNKK 161 +S Q + + + Q+ + SS+ P S N + Sbjct: 75840 Q-QSSQASHAMRNSSTSQSQQQNTANQQSSSSPTSNGNSQ 75956 >gi|325194341|emb|FR825182.1| Albugo laibachii Nc14, genomic contig CONTIG_1820_NC14_v4_1485_134 Length = 1485 Score = 28.9 bits (63), Expect = 2.4 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 123 WESMQEGKSYKGNLKLSQQEAESGASTSSAVPK-SKPNKKPLRGGGYNPLSGE 174 W+ + S + N +LS + S A S+A + ++P+K +RGGG L+G+ Sbjct: 1322 WQENCKATSQRWN*RLSWYASGSYADASNARAR*AQPSKATIRGGGEPALAGK 1480 >gi|325182412|emb|FR824072.1| Albugo laibachii Nc14, genomic contig CONTIG_27_NC14_v4_154116_231 Length = 154116 Score = 28.5 bits (62), Expect = 3.1 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +1 Query: 94 QEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEG-----KSYKGNLKLSQQEAESGAS 148 +E + Y+E++R LEE +++ EM +S QE ++ +++ Q+E E Sbjct: 95437 EEGFETKRSEYEEQKRLLEESQKKDLDEMRDSHQEQVEKCILQFRQEVRIVQEEQERNLK 95616 Query: 149 TSSAVPKSKPN 159 + + K N Sbjct: 95617 SVKGEYEKKRN 95649 >gi|325185797|emb|FR824136.1| Albugo laibachii Nc14, genomic contig CONTIG_91_NC14_v4_82899_205 Length = 82899 Score = 28.5 bits (62), Expect = 3.1 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +1 Query: 82 RQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQ 141 +QEALLA + ++ E+ R +EK+R EE++ ++ + + +S K +L +Q Sbjct: 35176 KQEALLAKQAQL--EMMVDTRRKEEKERNREEKR*GYRLLILCQLNLSRSVKHFKELEKQ 35349 Query: 142 E 142 E Sbjct: 35350 E 35352 >gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic contig CONTIG_115_NC14_v4_74376_238 Length = 74376 Score = 27.7 bits (60), Expect = 5.2 Identities = 29/111 (26%), Positives = 45/111 (40%) Frame = +2 Query: 50 LIVQKISPYLRMRPSSQQGATGAAVEPDMVVRRQEALLASRLRMQEELNAQAERYKEKQR 109 LI QK+ +L + Q+ G ++ + + QE L S +M E E K+ Sbjct: 5360 LIKQKVGAFLHV----QRFTYGQLLQQNELQSLQELLHLSAAKMAETEERSVESVKKTS- 5524 Query: 110 QLEEQKRRQKIEMWESMQEGKSYKGNLKLSQQEAESGASTSSAVPKSKPNK 160 RR+ I E S + ++ SGA + AV +KPNK Sbjct: 5525 --PSYIRRKSIPPTIHQDEVLSLSEMISPTEIGVFSGAKNTLAVTVTKPNK 5671 >gi|325192095|emb|FR824431.1| Albugo laibachii Nc14, genomic contig CONTIG_387_NC14_v4_22264_219 Length = 22264 Score = 27.7 bits (60), Expect = 5.2 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -3 Query: 92 RMQEELNAQAERYKE--KQRQLEEQKRRQKIEMWESMQEGKSYKGNLKLS 139 R+Q ++ + ++ KE K+ + E+QKRRQK E+ + S+ +L S Sbjct: 8135 RLQSDIRERQDQLKEEKKRHREEKQKRRQKNELKSMSVQSVSHAESLASS 7986 >gi|325195018|emb|FR825815.1| Albugo laibachii Nc14, genomic contig CONTIG_2850_NC14_v4_558_400 Length = 558 Score = 27.3 bits (59), Expect = 6.9 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 Query: 29 TVGALLSSYGWYILLACVAIYLIVQKISPYLRMRPSSQQGATGAAVE 75 T G LLSS WY++ + +Y ++ ++ ++ + QQ A A E Sbjct: 417 TCG*LLSSEYWYLVDSFAQLYYVLDQMHNAFKVNITHQQAANMFAAE 557 >gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic contig CONTIG_32_NC14_v4_147300_209 Length = 147300 Score = 26.9 bits (58), Expect = 9.0 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Frame = -1 Query: 79 VVRRQEALLASRLRMQE-----ELNAQAERYKEKQRQLEEQKRRQKIEMWES--MQEGKS 131 ++R++++ L++ L Q ELN +R K +++LEE R++ ES + E +S Sbjct: 13059 LLRKEKSQLSTTLTFQNTTLMTELNDAKKRSKILEQKLEEYHSRERNRSRESKLVMENES 12880 Query: 132 YKGNLKLSQQEAE 144 + G++ E E Sbjct: 12879 HGGSVTSLSPELE 12841 >gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig CONTIG_64_NC14_v4_99844_253 Length = 99844 Score = 26.9 bits (58), Expect = 9.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -1 Query: 148 STSSAVPKSKPNKKPLRGGGYNPLSGEGGGTCS 180 S + AV KS + G GYNPL+ E G+CS Sbjct: 73969 SVTPAVMKSSM----MNGHGYNPLNREQRGSCS 73883 >gi|325189158|emb|FR824248.1| Albugo laibachii Nc14, genomic contig CONTIG_203_NC14_v4_46719_118 Length = 46719 Score = 26.9 bits (58), Expect = 9.0 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Frame = -2 Query: 79 VVRRQEALLASRLRMQE-----ELNAQAERYKEKQRQLEEQKRRQKIEMWES--MQEGKS 131 ++R++++ L++ L Q ELN +R K +++LEE R++ ES + E +S Sbjct: 12887 LLRKEKSQLSTTLTFQNTTLMTELNDAKKRSKILEQKLEEYHSRERNRSRESKLVMENES 12708 Query: 132 YKGNLKLSQQEAE 144 + G++ E E Sbjct: 12707 HGGSVTSLSPELE 12669 >gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic contig CONTIG_379_NC14_v4_22761_228 Length = 22761 Score = 26.9 bits (58), Expect = 9.0 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -2 Query: 109 RQLEEQKRRQKIEMWESMQEGKSYKGNL-KLSQQEAESGASTSSAVPK------SKPNKK 161 R E ++RQ++ +W++ Q GKS + L +++ Q G + + K + + + Sbjct: 19319 RLKELVRKRQQLVVWDAAQRGKSLRSRLEQITTQHHALGLTLQHPIRKGPVDGTEREHSR 19140 Query: 162 PLR 164 PLR Sbjct: 19139 PLR 19131 >gi|325192759|emb|FR824511.1| Albugo laibachii Nc14, genomic contig CONTIG_469_NC14_v4_15189_231 Length = 15189 Score = 26.9 bits (58), Expect = 9.0 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 78 MVVRRQEALLASRLRMQEELNAQAERYKEKQRQLEEQKRRQKI 120 M+ R+++ + LRM ++ A R + K R+ E KRR+++ Sbjct: 12597 MIRRKRKKTVKKNLRMDQKKMVIAHRKRIKTRKTERIKRRKRM 12725 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.311 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,994,676 Number of Sequences: 3816 Number of extensions: 71034 Number of successful extensions: 468 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 282 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 413 length of query: 194 length of database: 10,913,379 effective HSP length: 95 effective length of query: 99 effective length of database: 10,550,859 effective search space: 1044535041 effective search space used: 1044535041 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 58 (26.9 bits)