TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|315013579|ref|NP_001186661.1| selenoprotein S [Equus caballus] (190 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.8 35 0.023 T.congo.pschr.9 33 0.067 T.congo.pschr.6 32 0.15 T.congo.pschr.11 32 0.25 T.congo.pschr.3. 30 0.56 TcIL3000_10_v2.embl 30 0.74 T.congo.pschr4 30 0.96 T.congo.pschr.5 28 2.1 T.congo.pschr2 28 2.8 T.congo.pschr.7 27 6.2 >T.congo.pschr.8 Length = 2451971 Score = 35.0 bits (79), Expect = 0.023 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Frame = +1 Query: 54 RLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR 113 R + ++R +RAA +RQ AAA+ +EE +V + + ++ EEE R Sbjct: 2047594 RAEEMARKRAERAA---------RRQAEEAAAKKLAEEEEARRVAEEEIAQKRAEEEAAR 2047746 Query: 114 RKIEMWDSMQ--EGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEG 171 +++E + + E ++ ++ A G EE+S G S+ S+ + GG G G Sbjct: 2047747 KRLEEEAARKKAEEEAARKKAEGGGEEESRGGSSKKEG*TGGSEEEGRAGGREEESRGSG 2047926 Score = 32.3 bits (72), Expect = 0.15 Identities = 25/107 (23%), Positives = 50/107 (46%) Frame = +1 Query: 54 RLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR 113 R + ++R +RAA +RQ AAA+ +EE +V + + ++ EEE R Sbjct: 2064673 RAEEMARKRAERAA---------RRQAEEAAAKKLAEEEEARRVAEEEIAQKRAEEEAAR 2064825 Query: 114 RKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLR 160 +++E + K+ + AR EE++ ++K++ + R Sbjct: 2064826 KRLE--EEAARKKAEQEAARKKAEEEAARKRAEQEAARKKAEEEAAR 2064960 Score = 32.0 bits (71), Expect = 0.19 Identities = 24/89 (26%), Positives = 40/89 (44%) Frame = +1 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 A R+ R+ A + KR E AAR K +E L + E+ + R EE KRR + Sbjct: 2047225 ARRRSRMQAARMRARKAAMRKRMEE--AARKKAEEALKREAEQEAAQKRAREEAKRRAEE 2047398 Query: 117 EMWDSMQEGKSYKRNARGPQEEDSPGPST 145 E E ++ ++ A+ + + +T Sbjct: 2047399 EAARKRAEEEAEQKRAQEEAQRQAEEEAT 2047485 Score = 31.6 bits (70), Expect = 0.25 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = +1 Query: 60 QRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMW 119 QR +R AA+ KR E AAR K +E L + E+ + R EE KRR + E Sbjct: 2064355 QRESERGKAAMG-----KRMEE--AARKKAEEALKREAEQEAAQKRAREEAKRRAEEEAE 2064513 Query: 120 DSMQEGKSYKR---NARGPQEEDSPGPSTSSVIPKRKSDRKPLR 160 + ++ ++ A Q E+ + +R+S R+ L+ Sbjct: 2064514 QKRAQEEAQRQAEEEATRKQAEEEAARKRAENARRRESAREALK 2064645 Score = 31.6 bits (70), Expect = 0.25 Identities = 19/84 (22%), Positives = 39/84 (46%) Frame = +1 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 A R+R AA + +++ AAR K +EE + + + ++ EEE R++ Sbjct: 2064898 AARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2065077 Query: 117 EMWDSMQEGKSYKRNARGPQEEDS 140 E + ++ + R +EE++ Sbjct: 2065078 EQEAARKKAEEEAARKRAEEEEEA 2065149 Score = 29.6 bits (65), Expect = 0.96 Identities = 18/74 (24%), Positives = 35/74 (47%) Frame = +1 Query: 64 DRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQ 123 + A E ++ KR E AAR +++EE + + + ++ EEE R++ E + + Sbjct: 2064760 EEARRVAEEEIAQKRAEE-EAARKRLEEEAARKKAEQEAARKKAEEEAARKRAEQEAARK 2064936 Query: 124 EGKSYKRNARGPQE 137 + + R QE Sbjct: 2064937 KAEEEAARKRAEQE 2064978 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/81 (22%), Positives = 36/81 (44%) Frame = +1 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 A R++ AA + +++ AAR K +EE + + + ++ EEE R++ Sbjct: 2064844 AARKKAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2065023 Query: 117 EMWDSMQEGKSYKRNARGPQE 137 E + ++ + R QE Sbjct: 2065024 EQEAARKKAEEEAARKRAEQE 2065086 Score = 28.5 bits (62), Expect = 2.1 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Frame = +2 Query: 47 LFQKLSSRLRALR--QRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKL 104 L L R ++L + R + A V+PD Q L + +E L Q +K ++ Sbjct: 2451629 LMSDLQERQKSLNGLRNRYEVQLARVDPDKANWTQAQLVMEAAREREGLQMQGDKLDARV 2451808 Query: 105 RQLEEE--KRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPL 159 QLE+E K +R +E+ ++ S R+ ED + + +++ D K L Sbjct: 2451809 SQLEKEMAKLKRTLEV---IRASNSQYRHMFDTLPEDHEMMKMRAALQQQQRDLKTL 2451970 Score = 28.1 bits (61), Expect = 2.8 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +2 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 A R++ AA + +++ AAR K ++E A +K +E R+ EEE+ RKI Sbjct: 2047946 AARKKAEQEAARKKAEEEAARKRAEQEAARKKAEQE--AARKKAEEAARKAEEEEAARKI 2048119 Score = 28.1 bits (61), Expect = 2.8 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 58 LRQRRLDRAAAAVEPDVVVKRQEA-LAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 + Q+R + AA + R++A AAR K +EE + + + ++ EEE R++ Sbjct: 2064790 IAQKRAEEEAARKRLEEEAARKKAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2064969 Query: 117 EMWDSMQEGKSYKRNARGPQE 137 E + ++ + R QE Sbjct: 2064970 EQEAARKKAEEEAARKRAEQE 2065032 Score = 27.3 bits (59), Expect = 4.8 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Frame = -3 Query: 43 LLYVLFQKLSSRLRALRQRRLDRAAAAVEPDVVVKR-----QEALAAARLKMQEELNAQV 97 LLY L ++LS R R RR D +E +R Q++L +K++E + Sbjct: 70848 LLY-LKRELSIREEYDRLRREDEGRHRIEEQCSRQRETQLGQQSLLETAMKLEEVRAKRE 70672 Query: 98 EKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEED 139 E+ +++L ++EK+ +E W + + + R +EED Sbjct: 70671 EEQRQRL--FDQEKQ---LEEWKQQRAQELERDRRRRLEEED 70561 Score = 27.3 bits (59), Expect = 4.8 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Frame = -3 Query: 137 EEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSG--EGGGACSWRPGRRGPSSGG 188 E+D G V+ + DR RGG G GG R G RG GG Sbjct: 63960 EDDDDGDDDGRVVKVHRVDRGGFRGGNSGGFRGGDRGGFRGGDRNGNRGNFRGG 63799 Score = 26.9 bits (58), Expect = 6.2 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = +2 Query: 41 CILLYVLFQKLSSRLRALR---QRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQV 97 CI + Q S RAL Q RLD +A ++ V R+ +A +L + + A++ Sbjct: 857624 CIAMVKSLQHELSASRALTRATQSRLDESAQQIQQLV---RERDIACQKLSIAQGTAAEL 857794 Query: 98 EKHKEKLRQLEEEKRRRKIE 117 E+ ++K EEE+ R +E Sbjct: 857795 ER-QQKQASSEEERVRFLLE 857851 Score = 26.6 bits (57), Expect = 8.1 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%) Frame = -2 Query: 54 RLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEE----------LNAQVEKHKEK 103 RLR L Q L A+ + + +EA AA +L+ QE+ NAQ K++ Sbjct: 1270390 RLRKLEQ--LQHEQEAMTRHLALLHEEA-AAEKLQQQEKEKRVMEAVALANAQQISLKKR 1270220 Query: 104 LRQLEEEKRRRKIEMWDSMQE 124 + LEEE+ +R E QE Sbjct: 1270219 QQMLEEEEDKRIAEFNKQKQE 1270157 Score = 26.6 bits (57), Expect = 8.1 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = +1 Query: 119 WDSMQEGKSYKRNARG-----PQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEG 171 W+S QE + KRN R +E+ S S ++ +P+R + GGY+ L EG Sbjct: 1413283 WESNQEKECRKRNTRRISRRYIREKKSILLSVNACVPER------IARGGYSALPSEG 1413438 >T.congo.pschr.9 Length = 2092392 Score = 33.5 bits (75), Expect = 0.067 Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Frame = -1 Query: 49 QKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLE 108 +K+ + LR+ Q R ++ + ++++++Q+ A ++QEE Q E+ + KLR+ E Sbjct: 1315173 EKIWNELRSTLQERKEKLERR-KAELLLQQQQREAEEERRLQEE-KLQQEEEERKLREEE 1315000 Query: 109 EEKRRRKIEMWDSMQEGKSYKRNARGPQEE--DSPGPSTSSVIPKRKSDRKPLR 160 EE+ R++ +E + + A ++E + KRK +++ LR Sbjct: 1314999 EERARQREARRKRREEELAAEEAAALAEQEAAEEAAALAREEERKRKEEKRRLR 1314838 >T.congo.pschr.6 Length = 1233507 Score = 32.3 bits (72), Expect = 0.15 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%) Frame = -1 Query: 49 QKLSSRLRALRQRRLDRAAAAVEPD---VVVKRQEALAAARLKMQ-EELNAQVEKHKEKL 104 +KL L LRQ + +RAAAA + +++ Q L+ + ++ N + K++L Sbjct: 157596 EKLQGALAELRQLKQERAAAAEKESHHRALIEGQMVTTLQSLREKLDQRNIECRSLKKRL 157417 Query: 105 RQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPL 159 R LEE R+++ + S +++ + + SP P + +R PL Sbjct: 157416 RFLEE--NRKRLILHTSQLPDQTHNHHETESPAKHSPKPPVAGRNVVAAKERHPL 157258 Score = 27.3 bits (59), Expect = 4.8 Identities = 25/92 (27%), Positives = 43/92 (46%) Frame = -1 Query: 45 YVLFQKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKL 104 +VL L++ RA++ L+ + DV +Q A +QEE NA KL Sbjct: 227250 FVLQHDLNTVRRAVKA--LESELRTIGTDVAQHQQVA------HLQEESNA-------KL 227116 Query: 105 RQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQ 136 R+LEE+ RR ++ + + + + + R Q Sbjct: 227115 RRLEEDHRRHQLSINEIKESLRGFHEELRETQ 227020 >T.congo.pschr.11 Length = 4797796 Score = 31.6 bits (70), Expect = 0.25 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 75 VVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKR 112 V + +E + A R + EE+N ++KEKL+Q E E R Sbjct: 3841674 VERLEEHVVAVRTTLTEEMNVLTIEYKEKLKQKETENR 3841561 Score = 30.4 bits (67), Expect = 0.56 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 59 RQRRLDRAAAAVEPDVVVKRQ---EALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRK 115 R R+ + A A E + K++ E L L +E L ++ KH+E R+ EE +RRR+ Sbjct: 549811 RLRKHEEAREAEEREAQRKKEQEREVLYEHLLAEEELLRERLRKHQET-REAEERERRRQ 549987 Query: 116 IEMWDSMQEGKSY 128 E+ M +Y Sbjct: 549988 EEIQQRMGAHSAY 550026 Score = 30.0 bits (66), Expect = 0.74 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +1 Query: 98 EKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRK 157 EK K KL++++E +R R + + N R + + PG S S + RK D+K Sbjct: 4619836 EKRKTKLKEMKEWERNR-------LSDYPH*CSNRRESENAEKPGRSEESYLYDRKKDKK 4619994 Query: 158 PLRGGGYN 165 +N Sbjct: 4619995 KCHLNAWN 4620018 Score = 29.3 bits (64), Expect = 1.3 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -1 Query: 140 SPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSS 186 SP P+ S P+R + P+ + +G +C+WR PSS Sbjct: 2191033 SPAPTWESCRPRRTKEPHPV*SQKHGSHNGGTTPSCNWRTSPTAPSS 2190893 Score = 28.9 bits (63), Expect = 1.6 Identities = 20/87 (22%), Positives = 42/87 (48%) Frame = +1 Query: 52 SSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEK 111 + R+ A+RQ L + E + ++ AAR ++EE +E H+++ ++E Sbjct: 2952325 AERMEAVRQAELRKHEEEQE-----RLRQLELAARQALEEEWRNAIESHRKRQMEMEHTI 2952489 Query: 112 RRRKIEMWDSMQEGKSYKRNARGPQEE 138 R R++ + +E + + RG + E Sbjct: 2952490 REREMHLEYERRE-RELQDRLRGKEME 2952567 Score = 28.1 bits (61), Expect = 2.8 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 86 RLKMQEELNAQVEKHKEKLRQLEEEKRRR 114 RLK +EE ++E+ K++L +EEE R R Sbjct: 4414502 RLKKEEERRLRLEEEKKQLLLMEEEHRLR 4414416 Score = 28.1 bits (61), Expect = 2.8 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = +1 Query: 48 FQKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQL 107 + + S+ + ++ L A +E V ++ A + + + LN +VEKH+E +R L Sbjct: 2952832 YDDMESQFKTAKETYLANADERLE----VVDPQSTDAESVLLLKVLNEEVEKHRETVRLL 2952999 Query: 108 EEEKRRR 114 + E R+ Sbjct: 2953000 QAELERK 2953020 Score = 26.9 bits (58), Expect = 6.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +2 Query: 116 IEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGA 174 +E+W+ G GPQ + GP+ +++ R+PLRG G G G GA Sbjct: 3393632 LELWE*QSGGGG------GPQVV*TMGPN------RQRRPREPLRGRGRGGRGGRGRGA 3393772 Score = 26.6 bits (57), Expect = 8.1 Identities = 23/64 (35%), Positives = 28/64 (43%) Frame = -1 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 ALR+RR D V+R E L +LN +VEK EEEKRR Sbjct: 4482496 ALRERR----------DGAVRRVEQL------YNRKLNERVEKR-------EEEKRRMTE 4482386 Query: 117 EMWD 120 + WD Sbjct: 4482385 QQWD 4482374 Score = 26.6 bits (57), Expect = 8.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 161 GGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 G G + +G GGG W G SGG G Sbjct: 826637 GEGPSHATGRGGGRAGWPSGNGERPSGGGG 826726 >T.congo.pschr.3. Length = 1451265 Score = 30.4 bits (67), Expect = 0.56 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Frame = -3 Query: 105 RQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKS---DRKPLRG 161 R+L E K E D E KR ARG +++ GP ++ + + P G Sbjct: 340882 RRLREMKAAWYKEKEDREAERILKKRAARG---KNNGGPGQMLLLGSQAAAVNPSPPAAG 340712 Query: 162 GGYNPLSGEGGGACSWRPGRRGPS 185 GG P G G G G +GPS Sbjct: 340711 GGPGPSVGGGSGHSGIEAGAKGPS 340640 Score = 27.3 bits (59), Expect = 4.8 Identities = 19/84 (22%), Positives = 38/84 (45%) Frame = +1 Query: 76 VKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGP 135 V+ ++ + R EEL V++ E+L +EEE R + +E + R Sbjct: 1352473 VEGEKNVLQVRCARVEELEGIVQRKSEELIHMEEELLRTASTLQTCNRETEEAVRREYSS 1352652 Query: 136 QEEDSPGPSTSSVIPKRKSDRKPL 159 + +D G ++ +R+ +R+ L Sbjct: 1352653 RLQDVQGMRDAAEAQRREKERQLL 1352724 >TcIL3000_10_v2.embl Length = 3612457 Score = 30.0 bits (66), Expect = 0.74 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = +1 Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNA 132 D +++++ L R + EL EKH+E+ +++EEE R + E+ + + N Sbjct: 613366 DKLMEKENELEEERHRHSAELLLLHEKHEEERQRVEEEIRSLRAELARCREGATPHATND 613545 Query: 133 RGPQEEDS 140 + P ++S Sbjct: 613546 KLPGSQES 613569 Score = 27.7 bits (60), Expect = 3.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 124 EGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPL 159 E +S R P EED P P T ++ + + R+PL Sbjct: 395870 EHRSELRATHAPSEEDVPQPHTPTIHREGEGGRRPL 395763 Score = 27.3 bits (59), Expect = 4.8 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = -3 Query: 85 ARLKMQEELNAQVEKHKEK-LRQLEEEKRRRKIEMWDSMQEGK 126 ARL+ +EEL Q E+H+E+ LRQL E+ +++++ + +GK Sbjct: 3227072 ARLR-EEELQRQEEQHQEETLRQLTAEQEETRLKVFREL-DGK 3226950 Score = 27.3 bits (59), Expect = 4.8 Identities = 11/29 (37%), Positives = 12/29 (41%) Frame = -3 Query: 162 GGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 GG+ G GGG W G GG G Sbjct: 2325566 GGWGSGGGRGGGGSGWGSGGNSRGGGGRG 2325480 Score = 26.6 bits (57), Expect = 8.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 88 KMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 +++ E +E+ + LR+ EEEK RRK+ Sbjct: 1175090 EIRYEHTMAIERDRRLLREKEEEKHRRKV 1175176 Score = 26.6 bits (57), Expect = 8.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 148 VIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRR 182 ++ +K R+P RG +S GG CSW GRR Sbjct: 1926399 IVKIKKGRRQPGRGTRCTHISCSGG--CSWVSGRR 1926301 >T.congo.pschr4 Length = 1343510 Score = 29.6 bits (65), Expect = 0.96 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 160 RGGGYNPLSGEGGGACSWRPGRRGPSSGG 188 RGGGY+ G G CS P R G +S G Sbjct: 524439 RGGGYDCWVGHHGAFCSEAPTRTGGASAG 524525 Score = 26.6 bits (57), Expect = 8.1 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%) Frame = -1 Query: 78 RQEALAAARLKMQEELNAQVEKHKEKLR-------QLEEEKRRRKIE 117 R+ L + K + E A +E+ E+ R Q+EEEKRR++ E Sbjct: 3146 RERDLKRQKEKEERERRAALEREAEEKRRREAEERQIEEEKRRKRQE 3006 >T.congo.pschr.5 Length = 1517473 Score = 28.5 bits (62), Expect = 2.1 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -3 Query: 51 LSSRLRALRQRRLDRAAAAVEPDVVVKRQEALA-AARLKMQEELNAQVEKHKEKLRQLEE 109 +++R RQR + A A+ KR+EA A AA LK Q+E E+L+Q EE Sbjct: 1305239 VAARYAEERQRENELAREAL----CQKRREATARAAALKRQQE---------EELQQAEE 1305099 Query: 110 EKRRR 114 E +RR Sbjct: 1305098 ETKRR 1305084 Score = 26.6 bits (57), Expect = 8.1 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -3 Query: 60 QRRLDRAAAAVEP-DVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 +R L++A A VV+ +E + + + LNAQ+E++K + + EE + R + Sbjct: 1340048 ERELEKAIAMNRSMQEVVEAREVDDRKNVTLMQMLNAQIEENKRRYEEQIEEGQLRAV 1339875 Score = 26.6 bits (57), Expect = 8.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 161 GGGYNPLSGEGGGACSWRPGRR 182 GGG +G GG+C W+PG R Sbjct: 1058694 GGGVG--AGRFGGSCCWQPGPR 1058635 >T.congo.pschr2 Length = 799489 Score = 28.1 bits (61), Expect = 2.8 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Frame = -2 Query: 130 RNARGPQEEDSPGPSTSSVIPKRKSD--------RKPLRGGGYNPLSGEG-GGACSWRPG 180 +N G D GP+ + +P + R P GG SG GGA WRPG Sbjct: 157434 QNNGGMLRHDRVGPTGETYVPSPAASASSW*GSIRTP*ASGGSGYASGPATGGAVPWRPG 157255 >T.congo.pschr.7 Length = 2148087 Score = 26.9 bits (58), Expect = 6.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 103 KLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSP 141 KL LE RRR E+W +E +RN+ G E + P Sbjct: 1969331 KLAHLEHMHRRRAAELWKLHEEIDELRRNS-GISENEIP 1969218 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.315 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,937,123 Number of Sequences: 11 Number of extensions: 75752 Number of successful extensions: 581 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 258 Number of HSP's gapped (non-prelim): 511 length of query: 190 length of database: 7,429,315 effective HSP length: 92 effective length of query: 98 effective length of database: 7,428,303 effective search space: 727973694 effective search space used: 727973694 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 56 (26.2 bits)