TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|315013579|ref|NP_001186661.1| selenoprotein S [Equus caballus] (190 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_6 39 0.005 scaffold_27 37 0.026 scaffold_10 36 0.034 scaffold_41 35 0.076 scaffold_5 35 0.076 scaffold_4 35 0.076 scaffold_108 33 0.29 scaffold_1 33 0.29 scaffold_89 33 0.38 scaffold_20 32 0.64 scaffold_11 32 0.64 scaffold_66 32 0.84 scaffold_2 32 0.84 scaffold_13 31 1.1 scaffold_112 30 1.9 scaffold_34 30 1.9 scaffold_9 30 1.9 scaffold_3 30 1.9 scaffold_65 30 2.4 scaffold_21 30 2.4 scaffold_67 29 4.2 scaffold_48 29 4.2 scaffold_14 29 5.4 scaffold_12 29 5.4 scaffold_75 28 7.1 scaffold_57 28 7.1 scaffold_37 28 7.1 scaffold_33 28 9.3 scaffold_26 28 9.3 scaffold_15 28 9.3 >scaffold_6 Length = 2967614 Score = 38.9 bits (89), Expect = 0.005 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%) Frame = -2 Query: 49 QKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLE 108 Q +++ R+R+ D E + + +++E A ++ ++ A+ +K +E+ +L+ Sbjct: 410866 QAEKDKMKRARKRKQDEQKRIAEEEELKRKEEEDGRAEVERMKKDAARRKKEEEEASRLK 410687 Query: 109 EEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRK----------P 158 E R D+ ++ K ++ +RGP+ + ++ V P ++S Sbjct: 410686 AEADRM-----DAERDKKGRQQESRGPRF-GAAAANSKYVPPSQRSGTGGGGGGSSRFGS 410525 Query: 159 LRGGGYNPLSGEGGGACSWRPG--RRGPSSGGXG 190 RGGG S GGG R G RG S GG G Sbjct: 410524 DRGGGSGGSSYPGGGRYEGRSGGDDRGGSGGGGG 410423 Score = 28.1 bits (61), Expect = 9.3 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +2 Query: 62 RLDRAAAAVEPDVVVKRQEALAAARLKMQ--EELNAQVEKHKEKLRQLEEEKRRRKI 116 RLDRA V P + KR+ + L +Q E L ++ +HKE L +L+E RK+ Sbjct: 482693 RLDRA*--VPPLALAKRRSQFSTM*LLLQS*ENLPIKLFRHKEYLAKLQERGPLRKV 482857 Score = 28.1 bits (61), Expect = 9.3 Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +2 Query: 75 VVKRQEALAAARLKM--QEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNA 132 + +++A+ + R+ Q E+ + ++K EK+ + EEK + KIE+ S+ + + ++ Sbjct: 1563569 IYTQEKAIKSERIAELNQYEIVSNLKKELEKM-EATEEKLKEKIELQKSLIDDLNVEKLL 1563745 Query: 133 RGPQEEDSPGP 143 + +E+ P P Sbjct: 1563746 KSSSKENQPLP 1563778 >scaffold_27 Length = 873766 Score = 36.6 bits (83), Expect = 0.026 Identities = 48/193 (24%), Positives = 70/193 (36%), Gaps = 65/193 (33%) Frame = -2 Query: 61 RRLDRAAAAVEPDVV-----VKRQEALAAARLKMQEELNAQVEKHKEK------------ 103 +R D AA A + + +KR E A A+ + EEL+ +++++ E Sbjct: 61977 KRTDEAAVAKQEENEELHRKIKRTEEAAVAKQEENEELHRKIKRYDEAAVAKQEENEEQH 61798 Query: 104 -----------LRQLEEEKRRRKIE--------------------MWDSMQE-------- 124 ++Q E E++RRKI+ ++ MQ+ Sbjct: 61797 RKIKRYDEAVIVKQEENEEQRRKIKRLEETIHDIGYRSARGAPFVLYQEMQQGGGRDGGG 61618 Query: 125 ---GKSYKR------NARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGAC 175 G Y R N RG D S+ R D RGGGY+ G GGG Sbjct: 61617 GSRGGGYDRGGCGGGNYRGRGRGDERRRSSRG----RGGDGHWERGGGYDCGGGGGGGGY 61450 Query: 176 SWRPGRRGPSSGG 188 R GR G GG Sbjct: 61449 DGRGGRGGGGGGG 61411 Score = 32.0 bits (71), Expect = 0.64 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = -2 Query: 160 RGGGYNPLSGEGGGACSWRPGRRGPSSGG 188 RGGGY+ G GGG R GR G GG Sbjct: 61176 RGGGYDRGGGGGGGGYDGRGGRGGGGGGG 61090 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = -2 Query: 76 VKRQEALAAARLKMQEELNAQVEKHKEK--LRQLEEEKRRRKIEMWDSMQEGK 126 +KR + A A+ + EEL+ ++++ +E +Q E E+ RKI+ +D K Sbjct: 61980 IKRTDEAAVAKQEENEELHRKIKRTEEAAVAKQEENEELHRKIKRYDEAAVAK 61822 Score = 29.3 bits (64), Expect = 4.2 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Frame = -2 Query: 152 RKSDRKPLRGGGYNPLSGEGGGACSWRPG---RRGPSSGGXG 190 R DR+ L GG G GGG C W G RG GG G Sbjct: 61242 RGDDRRGLSRGG-----GGGGGDCHWERGGGYDRGGGGGGGG 61132 >scaffold_10 Length = 1906272 Score = 36.2 bits (82), Expect = 0.034 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = -2 Query: 57 ALRQRRLDRAAAAVEPDVVVKR---QEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR 113 A +QR D+ A ++ +KR +EAL RLK +E VEK KE++ EEEKR+ Sbjct: 616268 AEKQRLADQVKAKKLLELEIKRKAKEEALEEKRLKKEEA----VEKKKEEILAREEEKRK 616101 Query: 114 RKIE 117 ++ E Sbjct: 616100 KEAE 616089 Score = 31.6 bits (70), Expect = 0.84 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQL-------EEEKRRRKIEMWDSMQEGKSYK 129 KR++ +R + ++ + EKHK +LRQL ++ +RR+++ + + + + K Sbjct: 1026095 KREKIKQTSRRERRKRQPRRREKHKRQLRQLLIRKKQQQQMRRRKRLTIENLLLRQQRRK 1026274 Query: 130 RNARGPQ 136 R R PQ Sbjct: 1026275 RQIRNPQ 1026295 >scaffold_41 Length = 550327 Score = 35.0 bits (79), Expect = 0.076 Identities = 20/42 (47%), Positives = 26/42 (61%) Frame = +3 Query: 101 KEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPG 142 +EK RQ+EEEK RRK E +E + +KR+A Q E PG Sbjct: 423417 EEKHRQMEEEKLRRKKE---EEEEQEKFKRSAMKKQTEAEPG 423533 >scaffold_5 Length = 3184085 Score = 35.0 bits (79), Expect = 0.076 Identities = 20/42 (47%), Positives = 26/42 (61%) Frame = -2 Query: 101 KEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPG 142 +EK RQ+EEEK RRK E +E + +KR+A Q E PG Sbjct: 1624567 EEKHRQMEEEKLRRKKE---EEEEQEKFKRSAMKKQTEAEPG 1624451 >scaffold_4 Length = 3206981 Score = 35.0 bits (79), Expect = 0.076 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Frame = -3 Query: 57 ALRQRRLDRAAAAVEPDVVVKR---QEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR 113 A +QR D+ A ++ KR +EAL RLK +E VEK KE++ EEEKR+ Sbjct: 1527858 AEKQRLADQVKAKKLLELETKRKAKEEALEEKRLKKEEA----VEKKKEEILAREEEKRK 1527691 Query: 114 RKIE 117 ++ E Sbjct: 1527690 KEAE 1527679 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQL-------EEEKRRRKIEMWDSMQEGKSYK 129 KR++ +R + ++ + EKHK +LRQL ++ +RR+++ + + + + K Sbjct: 1981421 KREKIKQTSRRERRKRQPRRREKHKRQLRQLLIRKKQQQQMRRRKRLTIENLLLR*QRRK 1981600 Query: 130 RNARGPQ 136 R R PQ Sbjct: 1981601 RQRRNPQ 1981621 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +1 Query: 75 VVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARG 134 VVK+ AL E+ A+ E KEK +++EEEK RRK + K ++ G Sbjct: 2499559 VVKQDPAL--------EKRRAEEENTKEK-KKIEEEKARRKKRKEEGEARRKKFRPTIAG 2499711 Query: 135 PQEED 139 Q+ + Sbjct: 2499712 LQDSN 2499726 >scaffold_108 Length = 91266 Score = 33.1 bits (74), Expect = 0.29 Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = +3 Query: 77 KRQEALAAARLKMQEELNAQVEKHKE----KLRQLEEEKRRRKIEMWDSMQEGKSYKRN 131 K+ + AR +M+ ++ ++ EK ++ K+++++++K RRK++ ++ K KRN Sbjct: 49365 KKMSTRSQARSQMRRQMTSKTEKKEKI*TTKMKRMKKQKHRRKVKKKKKKKKKKKKKRN 49541 >scaffold_1 Length = 5926375 Score = 33.1 bits (74), Expect = 0.29 Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKE----KLRQLEEEKRRRKIEMWDSMQEGKSYKRN 131 K+ + AR +M+ ++ ++ EK ++ K+++++++K RRK++ ++ K KRN Sbjct: 3632216 KKMSTRSQARSQMRRQMTSKTEKKEKI*TTKMKRMKKQKHRRKVKKKKKKKKKKKKKRN 3632392 Score = 29.3 bits (64), Expect = 4.2 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = +3 Query: 109 EEKRRRKIEMWDSMQEGKSYKRNAR----GPQEEDSPGPSTSSVIPKRKSDRKPLRGGGY 164 ++K++ I DSM++ K K+N + EED G SS I K D + Sbjct: 1298973 KQKKQSNINSSDSMKKSKKKKKNKKKKSANNDEEDREGEEPSSKIIKVIEDNE------- 1299131 Query: 165 NPLSGEGGGA 174 N GEGG + Sbjct: 1299132 NVSLGEGGSS 1299161 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/52 (26%), Positives = 32/52 (61%) Frame = -3 Query: 97 VEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSV 148 VE+++++ RQ + +R+++ + D G+ +RN +G ++ + S+SSV Sbjct: 2054366 VERYRQQNRQTDRRERQQEQQQQDDEVHGR--RRNHQGDRQHSASSISSSSV 2054217 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = -3 Query: 78 RQEALAAARLKMQEELNAQVEKHKEKLRQLEEE 110 + E LA AR + +++ +E+H E +RQLE++ Sbjct: 4036571 QHEQLARARQQARQQHQQDMEQHYEDIRQLEQQ 4036473 Score = 28.1 bits (61), Expect = 9.3 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 10/100 (10%) Frame = -2 Query: 49 QKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAA--------ARLKMQEELNAQVEKH 100 Q L L + + + + ++ ++ QE+ AA + K++EEL +H Sbjct: 4145805 QTLCKLEEELEKTKSEHSEVTIKLQETLQEQESRAAMMQVETDQSLCKLEEELERTKSEH 4145626 Query: 101 KEKLRQLEEEKRRR--KIEMWDSMQEGKSYKRNARGPQEE 138 +E + +++E R R +IEM E K A + E Sbjct: 4145625 REGVMRIQESLRERESQIEMMQVETERLLCKLKAESDENE 4145506 >scaffold_89 Length = 168682 Score = 32.7 bits (73), Expect = 0.38 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Frame = -2 Query: 76 VKRQEALAAARLKMQEELNAQVEKHKE---KLRQLEEEKRRRKIEMWDSMQEGKSYKRNA 132 ++ E + ++R +Q N + K+ K R +EE+ IE++ + R A Sbjct: 117399 MRSMENVRSSRHDIQGHANVTMMKNPPPAAKRRSQQEEEDDDVIEVYKDETAPPAPARRA 117220 Query: 133 RGPQEEDSPGPSTSSVIPKRKS----DRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG 188 R + V KRK KP +GG S G G + GRRG ++GG Sbjct: 117219 RTRTRTTTTTRPKPKVKTKRKRATSRKAKPRKGGRKRTASTRGKGRGGNKFGRRGGAAGG 117040 Query: 189 XG 190 G Sbjct: 117039 GG 117034 >scaffold_20 Length = 1108856 Score = 32.0 bits (71), Expect = 0.64 Identities = 24/94 (25%), Positives = 40/94 (42%) Frame = -2 Query: 72 PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRN 131 PD + E L R+K +E Q+ HK + L+++K +E K K+ Sbjct: 481474 PDDGLSNYERLRLERIKRNQERLQQLGLHKSNIVPLKKKK-----------EEKKKKKQP 481328 Query: 132 ARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYN 165 + G ++D+P S +K+ K R G N Sbjct: 481327 SIGSLQQDAPLTRAQSKRSAKKNPSKTKRDNGTN 481226 Score = 28.9 bits (63), Expect = 5.4 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Frame = -2 Query: 60 QRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLR--QLEEEKRRRK 115 ++ ++R AAA E +KR L A + ++EL A+V + + KL+ QLE E+ RK Sbjct: 985345 RQEMERKAAAAETAAELKRDLELELA--QKEKELEAKVAEAEAKLQREQLELEEAARK 985178 >scaffold_11 Length = 1700871 Score = 32.0 bits (71), Expect = 0.64 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = -2 Query: 56 RALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVE---KHKEKLRQLEEEKR 112 R ++Q+ L+R + + + E R + Q QVE K K LRQ E++++ Sbjct: 400529 RQMKQKELERQTRLEDEETARRAVEKAKLGREEQQRLQQQQVEAKEKAKVNLRQKEQQQQ 400350 Query: 113 RRKIEMWDSMQE 124 + KIE+ +E Sbjct: 400349 QEKIELQKRQKE 400314 Score = 30.8 bits (68), Expect = 1.4 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 23/122 (18%) Frame = -1 Query: 59 RQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEK------------HKEKLRQ 106 ++R+ + A A E + Q+ LA AR K +++ + EK H++KLR+ Sbjct: 955461 KRRKEEEAKDAAERE----EQQRLAMARKKEEDDTRRKQEKSIRQQQQKEQQMHRKKLRK 955294 Query: 107 LEEEKRRRKIEMWDSMQEGK---------SYKRNARGPQE--EDSPGPSTSSVIPKRKSD 155 EE++R++ ++ ++G S ++ GP++ + S T++V+ K Sbjct: 955293 -EEDERKKLLQQQKESEKGNNGNGKNGQMSVVQSVEGPKQTPQSSSTNQTNAVVAKNGVS 955117 Query: 156 RK 157 +K Sbjct: 955116 KK 955111 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 82 LAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI 116 LA+ + + L+ E+H+EKL Q+EEE I Sbjct: 1644373 LASRTILKEWSLSPGAEEHREKLNQIEEESNENTI 1644269 Score = 28.1 bits (61), Expect = 9.3 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +1 Query: 79 QEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEE 138 +E + +K ++ L Q +K K+ + Q +++ +K +WD + K N R E Sbjct: 843823 EEQMNEFEVKRRQHLVEQKQKEKDFINQ--QDRENKKQRIWDDERRESEEKMNDRLKTLE 843996 Query: 139 DSPG 142 D G Sbjct: 843997 DKNG 844008 >scaffold_66 Length = 283846 Score = 31.6 bits (70), Expect = 0.84 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = -1 Query: 95 AQVEKHKEKLRQLEEEKRR--RKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKR 152 A +E+ ++KLR+L ++KRR +K+ + Q+ K K P SP KR Sbjct: 28618 ASIERRRKKLRKLYKKKRRKQKKVAAEKAAQKKKKNKNEKNNPPFLSSPNTIQRKTRKKR 28439 Query: 153 K 153 K Sbjct: 28438 K 28436 >scaffold_2 Length = 3822992 Score = 31.6 bits (70), Expect = 0.84 Identities = 17/61 (27%), Positives = 34/61 (55%) Frame = +3 Query: 69 AVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSY 128 A++ + KR E ++ ++ +QEE + + K + L+EEK+R++ E +EG+ Sbjct: 1789548 ALQEEKKRKRAEEMSKQKV-LQEEKKRKRAEEMSKQKALQEEKKRKRAEEMSERKEGEKQ 1789724 Query: 129 K 129 K Sbjct: 1789725 K 1789727 Score = 30.0 bits (66), Expect = 2.4 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 8/89 (8%) Frame = +3 Query: 50 KLSSRLRALRQRRLDRAAAAVEPDVVV----KRQEALAAARLK-MQEELNAQVEKHKEKL 104 +++ L A R+ + + A + V+ KR++A ++ K +QEE + + K Sbjct: 1789419 EVADLLTAAREEKKRKRAEEMSKQKVLQEEKKRKKAKEISKQKALQEEKKRKRAEEMSKQ 1789598 Query: 105 RQLEEEKRRRKIEMWD---SMQEGKSYKR 130 + L+EEK+R++ E ++QE K KR Sbjct: 1789599 KVLQEEKKRKRAEEMSKQKALQEEKKRKR 1789685 Score = 30.0 bits (66), Expect = 2.4 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -3 Query: 130 RNARGPQEEDSPGPSTSSVIPKRKSDRKP 158 R+ GPQ GP+ S V+P+R+ +P Sbjct: 989520 RSVSGPQSRCCVGPARSKVVPRRRKSHRP 989434 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 96 QVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEED 139 Q+ + KEK ++ +RRR+ E DS ++G + R R Q D Sbjct: 2651428 QISRTKEK-SSSDDHRRRRRDESVDSSRDGDHHHRRRRNRQRHD 2651556 >scaffold_13 Length = 1481013 Score = 31.2 bits (69), Expect = 1.1 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 4/119 (3%) Frame = +2 Query: 76 VKRQEALAAARLKMQEELNAQVEKHKE---KLRQLEEEKRRRKIEMWDSMQEGKSYKRNA 132 ++ E + ++R +Q N + K+ K R +EE+ IE++ + R A Sbjct: 1211273 MRSMENVRSSRHDLQGHTNVTMMKNPPPAAKRRSQQEEEDDDVIEVYKDETAPPAPARRA 1211452 Query: 133 RGPQEEDSPGPSTSSVIPKRKSDR-KPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 + P + + S + KP +GG S G G + GRRG ++GG G Sbjct: 1211453 KRTTTTTRAKPKVKTKRKRATSRKAKPRKGGRKRIASTRGKGRGGNKFGRRGGAAGGGG 1211629 >scaffold_112 Length = 74075 Score = 30.4 bits (67), Expect = 1.9 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Frame = +2 Query: 88 KMQEELNAQVEKHKEKLRQL-EEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTS 146 K+ ++++ K EK+++ EE + + E W+++ + K K+ + S G S Sbjct: 21122 KLFKQMHGDEAKIMEKIQEWWEEPAQPAQEESWEAVDKKKPIKK-----KPIVSGGGSGG 21286 Query: 147 SVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 S R+ + RGGG + G GGG RG + GG G Sbjct: 21287 SGSGDRRD--RASRGGGRDSAGGRGGGR------DRGAARGGRG 21394 >scaffold_34 Length = 583829 Score = 30.4 bits (67), Expect = 1.9 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Frame = +1 Query: 88 KMQEELNAQVEKHKEKLRQL-EEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTS 146 K+ ++++ K EK+++ EE + + E W+++ + K K+ P G S Sbjct: 244105 KLFKQMHGDEAKIMEKIQEWWEEPAQPAQEESWEAVDKKKPIKKK---PIVSGGGGSGGS 244275 Query: 147 SVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 R S RGGG + G GGG RG + GG G Sbjct: 244276 GDRRDRAS-----RGGGRDSAGGRGGGR------DRGAARGGRG 244374 >scaffold_9 Length = 2734635 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -3 Query: 58 LRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVE---KHKEKLRQLEEEKRRR 114 ++Q+ L+R + + + E R + Q QVE K K LRQ E+++++ Sbjct: 1915474 MKQKELERQTRLEDEETARRAVEKARLGREEQQRLQQQQVEAKEKAKVNLRQKEQQQQQE 1915295 Query: 115 KIEMWDSMQE 124 KIE+ +E Sbjct: 1915294 KIELQKRQKE 1915265 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Frame = -3 Query: 78 RQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWD----SMQEGKSYKRNAR 133 RQE A R+ + +L Q +++ +QLE + KI++ Q+ K + Sbjct: 1915099 RQEEETARRVTEKTKLEEQQRLQQQEQQQLERANEKAKIDLRQQEQLQQQQQKELGQRKT 1914920 Query: 134 GPQEEDSPGPSTSSVIPKRKSDRK 157 G ++ P+ + RK+D K Sbjct: 1914919 GRSVKNVNTPTAKEIKQDRKTDEK 1914848 Score = 29.6 bits (65), Expect = 3.2 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 23/122 (18%) Frame = -3 Query: 59 RQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEK------------HKEKLRQ 106 ++R+ + A A E + ++ LA AR K +++ + EK H++KLR+ Sbjct: 2452849 KRRKEEAAKDAAERE----ERQRLAMARKKEEDDTRRKQEKSIRQQQQKEQQMHRKKLRK 2452682 Query: 107 LEEEKRRRKIEMWDSMQEGK---------SYKRNARGPQE--EDSPGPSTSSVIPKRKSD 155 EE++R++ ++ ++G S ++ GP+E + S T++V+ K Sbjct: 2452681 -EEDERKKLLQQQKESEKGNNGNGKNGQMSVVQSVEGPKETPQSSSTNQTNAVVAKNGVP 2452505 Query: 156 RK 157 +K Sbjct: 2452504 KK 2452499 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 143 PSTSSVIPKRKSDRKPLRGGGYNPLS 168 P +SSV+P + S +P GYNP S Sbjct: 1457504 PYSSSVLPSQPSGLQPRSSSGYNPAS 1457581 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 99 KHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEE 138 KH ++ + LEE +R+K+ WD Q+G+ + P+ E Sbjct: 1501997 KHGQR-KCLEENTQRKKMHRWDQCQQGQCMSQL*ANPRRE 1502113 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = +3 Query: 80 EALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEED 139 E + +K ++ L Q +K K+ + Q +E+ +K +WD + K N R ED Sbjct: 2349009 EQMEEFEVKRRQHLVEQKQKEKDLINQ--QERENKKQRIWDDERRESEEKINHRLKTLED 2349182 Query: 140 SPG 142 G Sbjct: 2349183 ENG 2349191 >scaffold_3 Length = 3437899 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Frame = -1 Query: 57 ALRQRRLDRAAAA--VEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLR-QLEEEKRR 113 AL + +AA+A P + +A A + K Q++ Q +++ ++L+ Q ++ ++ Sbjct: 320224 ALTMAAVAQAASANNKSPAEQAEMAKAHAHSLAKNQQQQQKQQQQNPQQLQHQRHQQHQQ 320045 Query: 114 RKIEMWDSMQEGKSYKRNARGPQEEDSPGPS 144 R+ + Q+ +++ + RGP + +P P+ Sbjct: 320044 RQQQQQQQQQQQQNHPYHRRGPGQNQAPSPT 319952 Score = 29.3 bits (64), Expect = 4.2 Identities = 21/54 (38%), Positives = 23/54 (42%) Frame = +3 Query: 130 RNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRG 183 R R + S G STSS +R S R R G G C WR GRRG Sbjct: 3255198 RRWRNSRSSGSSGSSTSSRCSRRFSRRWSRRCGW------RCGRRCGWRCGRRG 3255341 Score = 28.9 bits (63), Expect = 5.4 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = -1 Query: 47 LFQKLSSRLRALRQRRLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ 106 L +KL RLR RQR K+ + AAA+ K+ EE +VE+ + ++ Sbjct: 549109 LKRKLKRRLR--RQR---------------KKPKRNAAAKAKLDEEAKKKVEEEEAAVKL 548981 Query: 107 LEEEKRRRKIE 117 EE+ ++K E Sbjct: 548980 TAEEEAKKKAE 548948 >scaffold_65 Length = 283846 Score = 30.0 bits (66), Expect = 2.4 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = -3 Query: 81 ALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDS 140 AL KM + + H+++LR+ EE+ R+ E + + +S + ++ PQE S Sbjct: 40043 ALPNGNTKMLKTEKKFSKYHEDRLREEEEKFRKENFEN-EEVSTSES-EPESKSPQESQS 39870 Query: 141 PGPSTSS 147 P STSS Sbjct: 39869 PLSSTSS 39849 >scaffold_21 Length = 951085 Score = 30.0 bits (66), Expect = 2.4 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = -3 Query: 81 ALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNARGPQEEDS 140 AL KM + + H+++LR+ EE+ R+ E + + +S + ++ PQE S Sbjct: 200927 ALPNGNTKMLKTEKKFSKYHEDRLREEEEKFRKENFEN-EEVSTSES-EPESKSPQESQS 200754 Query: 141 PGPSTSS 147 P STSS Sbjct: 200753 PLSSTSS 200733 >scaffold_67 Length = 262195 Score = 29.3 bits (64), Expect = 4.2 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Frame = -3 Query: 55 LRALRQRRLDRAAAAVEPDVVVKRQEA-LAAARLKMQEELNAQVEKHKEKLRQLEEEKRR 113 +R + + L ++ +EP ++Q+ L + L+ + + H E L +L E Sbjct: 50426 IRRQQSQSLQEKSSHIEPQQATEQQQKQLLLSLLRRKRSKDMTPNDHVEMLEELVE---- 50259 Query: 114 RKIEMWDSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGG 173 + + + + +G +E S R+P RG + G GGG Sbjct: 50258 -------TTKSSSEFFVDLKGDEERGSDSDDDDDATGGGGDQRRPGRGRRVEKIVGIGGG 50100 Query: 174 ACSWRP 179 + S P Sbjct: 50099 SRSLSP 50082 >scaffold_48 Length = 420661 Score = 29.3 bits (64), Expect = 4.2 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -2 Query: 140 SPGPSTSSVIPKRKSD-RKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 +P P+ SS + +D GGG + G GGG S G G GG G Sbjct: 75804 NPNPNPSSGMKNWSADSNSSSSGGGSSAGGGAGGGGSSSHGGGGGGGGGGSG 75649 >scaffold_14 Length = 1349802 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = -3 Query: 136 QEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSG 187 Q++ G S+SS ++ + NP SG GGG R G++ G Sbjct: 1082590 QQQQQQGRSSSSSPQVGTNNNNSINKNNNNPFSGGGGGGVGGRMGQQQQQQG 1082435 >scaffold_12 Length = 1636732 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 16 AEGLRFLHVTVGSLLAAYGWYLVFSCILLYVLFQKLSSRLRALRQRRLD 64 AEG+ F T G+ ++G++ S VL LSS + AL +++ Sbjct: 1545629 AEGIFFSPATFGTKTLSFGFFSFLSTFCTIVLLMPLSSSVNALAVEKVE 1545483 >scaffold_75 Length = 233033 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 143 PSTSSVIPKRKSDRKPLRGGGYNPLS 168 P +SSV+P + S +P GYNP S Sbjct: 159395 PYSSSVLPSQPSGLQPRSSSGYNPAS 159472 >scaffold_57 Length = 346956 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = -3 Query: 120 DSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGA----C 175 + + +G++Y N G + G +T S++ + ++ + GGG G GGG+ Sbjct: 61816 NGVSDGETYDNNDDGEDWGEEKGANTGSMMSPQGVNKSAVSGGG----GGGGGGSQQQKA 61649 Query: 176 SWRPGRRGPSSGGXG 190 S+ SGG G Sbjct: 61648 SFVVSEDETDSGGRG 61604 Score = 28.1 bits (61), Expect = 9.3 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKH----------KEKLRQLEEEKRRRKIEMWDSMQEGK 126 K +E +A A++K++ E ++E+ K K + EEEK R E + QEG+ Sbjct: 256304 KDEETVAFAKVKIEIETKKKIEEGAAFSKAKAAAKAKKVEEEEEKMRMDAEAKEEAQEGE 256483 Query: 127 SYKRNAR 133 + A+ Sbjct: 256484 IMRLEAK 256504 >scaffold_37 Length = 579102 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/54 (27%), Positives = 20/54 (37%) Frame = +1 Query: 120 DSMQEGKSYKRNARGPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGG 173 +SM ++Y N+ +P P P GYNP G GGG Sbjct: 481069 NSMDGHRNYSMNSLHSDFSAAPAPPPMGAPPPPPPSMGGSMNDGYNPFGGGGGG 481230 >scaffold_33 Length = 615088 Score = 28.1 bits (61), Expect = 9.3 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 86 RLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWDSMQEGKSYKRNAR 133 R K +E+ Q+ + K++ + L K+RRK + MQ G+ YK+ R Sbjct: 291289 RRKEKEQKKQQIGRQKKR-KSLTTRKQRRKEKEQKKMQIGRYYKKIIR 291429 >scaffold_26 Length = 868567 Score = 28.1 bits (61), Expect = 9.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 35 WYLVFSCILLYVLFQKLSSRLRALRQRRLDRAAAAV 70 WY++ C+LL +L + + R RQRR R A++ Sbjct: 811534 WYVIVFCVLLKLLKFIVLKKRRR*RQRRTRREGASI 811427 >scaffold_15 Length = 1348792 Score = 28.1 bits (61), Expect = 9.3 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = -2 Query: 62 RLDRAAAAVEPDVVVKRQEALAAARLKMQ--EELNAQVEKHKEKLRQLEEEKRRRKI 116 RLDRA V P + KR+ + L +Q E L ++ +HKE L +L+E RK+ Sbjct: 680832 RLDRA*--VPPLALAKRRSQFSTM*LLLQS*ENLPIKLFRHKEYLAKLQERGPLRKV 680668 Score = 28.1 bits (61), Expect = 9.3 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Frame = -2 Query: 57 ALRQRRLDRAAAAVEPDVVVKRQ--EALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRR 114 A + + + A VE + K++ E AAA+ K+ EE +VE+ + EEE +++ Sbjct: 531423 AAKAKADEEAKKKVEEEAAAKKKKTEDDAAAKAKVDEEATKKVEEEAAAKLKAEEEAKKK 531244 Query: 115 KIE-------MWDSMQEG-----KSYKRNARGPQEED 139 E D ++ G +Y+ R EED Sbjct: 531243 AEEEAVTAATAVDELESGVNTTRHTYQPRGRPMSEED 531133 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.315 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,729,199 Number of Sequences: 271 Number of extensions: 195137 Number of successful extensions: 1452 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 42 Number of HSP's that attempted gapping in prelim test: 969 Number of HSP's gapped (non-prelim): 982 length of query: 190 length of database: 26,846,802 effective HSP length: 100 effective length of query: 90 effective length of database: 26,819,702 effective search space: 2413773180 effective search space used: 2413773180 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 61 (28.1 bits)