TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|298286511|ref|NP_001177244.1| selenoprotein S [Ciona intestinalis] (204 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.8 38 0.004 T.congo.pschr.11 36 0.015 T.congo.pschr.6 33 0.099 T.congo.pschr2 31 0.37 TcIL3000_10_v2.embl 30 0.83 T.congo.pschr.5 30 0.83 T.congo.pschr.3. 30 0.83 T. 28 2.4 T.congo.pschr4 28 4.1 >T.congo.pschr.8 Length = 2451971 Score = 37.7 bits (86), Expect = 0.004 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Frame = +2 Query: 75 RKTYYDDTENMTPEQVEARSVA-MERARKKLQDRHDAAAREHEERLREQEEQKRMQKIND 133 RK ++ EQ AR A E ARKK + +AA ++ EE R++ EQ+ +K + Sbjct: 2047823 RKKAEEEAARKRAEQEAARKKAEQEAARKKAE---EAARKKAEEAARKKAEQEAARKKAE 2047993 Query: 134 HDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169 +A + Q KK +Q+ +A ++ K +E Sbjct: 2047994 EEAARKRAEQEAARKKAEQEAARKKAEEAARKAEEE 2048101 Score = 27.3 bits (59), Expect = 5.4 Identities = 12/47 (25%), Positives = 27/47 (57%) Frame = -3 Query: 112 AREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQ 158 A ++EER + +E++++ ++N H L A + +K + + P+Q Sbjct: 2418858 AFQYEERKKRKEKKRKKGELNQHVTLAAIASIWDKTKNISEAQSPSQ 2418718 >T.congo.pschr.11 Length = 4797796 Score = 35.8 bits (81), Expect = 0.015 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = -2 Query: 103 KLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQS 162 K +RH A ARE ++ R+QE+ +R Q+ DAL A +KT+KK ++ + + Q Sbjct: 1267419 KYTNRHAAEARERDQERRDQEKARRQQE--TEDALWA-DNDAKTAKKQAKQREAEEKAQR 1267249 Query: 163 HIKRNKESKPL 173 ++ K L Sbjct: 1267248 QAEQRALKKEL 1267216 Score = 30.4 bits (67), Expect = 0.64 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = +1 Query: 116 EERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRS 175 E +RE+ E KR + L++ +++ P P + K + E+ RS Sbjct: 2624302 ERLIREKYEHKRYFNVQYEALLRSFMSEA---------PPPASESSKDEKYSAETPMQRS 2624454 Query: 176 ----SDFSPLGGGPSNSARWRPG--NSRPSAGGXG 204 S SPL PSN AR PG +S+P+ G G Sbjct: 2624455 GVQPSFPSPLLENPSNGARAAPGAASSKPNQSGSG 2624559 Score = 28.9 bits (63), Expect = 1.9 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +1 Query: 112 AREHEERLR-EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170 AR+H+ + E++ KI L+ K Q +TSKK + PD + + +KR KE+ Sbjct: 2294092 ARKHK*HISIERDLYNTYPKIRQVTVLQVSK-QQRTSKKKKK*PDADDSNNECVKRRKEN 2294268 >T.congo.pschr.6 Length = 1233507 Score = 33.1 bits (74), Expect = 0.099 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -1 Query: 79 YDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKIND 133 YDD + E V ER ++L++ AARE E R E+E + R +K+++ Sbjct: 440352 YDDDYYCGYGEDEPEEVLEERYARQLEEEKRIAAREEERRRNEEELRARARKVDN 440188 >T.congo.pschr2 Length = 799489 Score = 31.2 bits (69), Expect = 0.37 Identities = 21/70 (30%), Positives = 31/70 (44%) Frame = -3 Query: 64 IEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQE 123 +E+ +K L +T + TEN + Q + KK Q+ EHE RE E Sbjct: 439187 LEEQIK-LTHNTQTENNTTENQSDSQKSRKQERQTTEIKKNQELGKKTTAEHENFPRETE 439011 Query: 124 EQKRMQKIND 133 QK + K N+ Sbjct: 439010 TQKHINKENE 438981 Score = 27.7 bits (60), Expect = 4.1 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Frame = -3 Query: 94 SVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKT-SKKLDQ 152 S A++RA + + + AAR H E + +Q R+ + ++ + +T +++L Q Sbjct: 440240 SSALDRAHQLRDEYKNEAARLHRELMEKQRSLDRV--VREYGECNKVLHRFRTENEELQQ 440067 Query: 153 KPDPNQATQSHIKRNKES----KPLRSSDFSPLGGGPSNSAR 190 K D +Q H++ +S + L+S L G N R Sbjct: 440066 KLDQSQGEVKHLRSVIQSANVQQELKSIGAGQLLGDKGNQER 439941 Score = 26.6 bits (57), Expect = 9.2 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 13/83 (15%) Frame = +3 Query: 69 KNLFGRRKTYYDDTENMTPEQVEARSVAME-----RARKKLQDR--------HDAAAREH 115 +NL+ + KTY + + P+ + R E R + +Q+R + H Sbjct: 606633 RNLYHQNKTYKKNAHSSIPQMIVLRMKCREVLPKQRLQ*AMQNR*SHRLPPLNSPVI*HH 606812 Query: 116 EERLREQEEQKRMQKINDHDALK 138 +E LR Q+ + K + + LK Sbjct: 606813 QELLRHQDRRHHQDKHHHQELLK 606881 >TcIL3000_10_v2.embl Length = 3612457 Score = 30.0 bits (66), Expect = 0.83 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = +1 Query: 83 ENMTPEQ---VEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKA 139 E M PE +E S +E+++ ++Q R A++ + + + + R + A A Sbjct: 2451640 EKMYPEVKQLLERVSDDLEKSKDRIQKREQTLAQQFSDHVEDYRVKLRELNSSQDAANIA 2451819 Query: 140 GKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPL 181 ++ + S +L+Q +KR+ E + + SD SPL Sbjct: 2451820 SQSVQQLSAELNQI----SGLLDQVKRDIEEREAKLSDTSPL 2451933 Score = 29.6 bits (65), Expect = 1.1 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Frame = +2 Query: 86 TPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSK 145 +P Q RS A R Q ++ + + + ++ Q ++ + Sbjct: 3470336 SPTQSSQRSSAQSSQRSSTQSPTQSSQQSSAQSPTQSSQRSSAQSSQRSSTQSPTQSSQQ 3470515 Query: 146 TSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNS--RPSA 200 +S + Q+P TQS + + +S P +SS S S+ P S RPSA Sbjct: 3470516 SSAQSSQRPSTQSPTQSSQQSSAQS-PTQSSQRSSAQSPRQQSSAQSPTQSSQRPSA 3470683 Score = 29.3 bits (64), Expect = 1.4 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = -2 Query: 80 DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE--QKRMQKINDHDAL 137 +D +++ E ++ +KL+D +E ++++ + E Q+ M+K + Sbjct: 1744086 EDVKSLIEEMRSQTEKYLDTYTRKLRDVEQTYEQERQQQIEKYNEEIQQLMKKRRTRETE 1743907 Query: 138 KAGKTQSK---TSKKLDQKPDPNQATQSHIKR 166 + ++K KK+D+K N+ + IKR Sbjct: 1743906 YRKRREAKILEAQKKMDEKHSENREEYNEIKR 1743811 Score = 27.7 bits (60), Expect = 4.1 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 15/89 (16%) Frame = +1 Query: 89 QVEARSVAMERARKKLQDRHDAAAREHEER-LREQEE-----------QKRMQKINDHD- 135 ++EA + + ++LQD +AA R+H E R+Q + ++++Q+ D Sbjct: 615199 ELEAGRIQWRNSIRELQDACEAARRQHTEHGARDQHQVQELQDTLRSLRQQLQEARDEGK 615378 Query: 136 --ALKAGKTQSKTSKKLDQKPDPNQATQS 162 L+ Q++ +KL Q +Q T + Sbjct: 615379 KLRLEVEAAQAERQRKLQQAEPEHQRTHA 615465 Score = 27.3 bits (59), Expect = 5.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 89 QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQK 126 Q E R+ AM+ R++ Q+RH A + EER E+K Sbjct: 2729271 QEEERANAMQIIRRRAQERHGAYLKCEEERRLLLAERK 2729158 Score = 26.9 bits (58), Expect = 7.1 Identities = 22/116 (18%), Positives = 47/116 (40%) Frame = +1 Query: 86 TPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSK 145 TPE+++ + + MER L D+ + + ++ +E K ++ + + D +T S Sbjct: 2015902 TPEEIDQKEMDMER----LMDQMERRNNQRQDIYSREEIIKMLKSLIEGDM----ETASS 2016057 Query: 146 TSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPSAG 201 L++ D + + R K++ S + P+ G+S G Sbjct: 2016058 IDPSLNRLTDEERRELQRLLREKKTHEGESGSGGDMDEVPAGGVDGHSGSSLSKDG 2016225 Score = 26.9 bits (58), Expect = 7.1 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -3 Query: 65 EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124 E+ L + + ++ E + E E + E R+KL++ + E LRE E Sbjct: 321641 EQLKAQLHEMEERHREELEAVASEAAERIAEHDELLRQKLEEAAAVGSGESVNSLREANE 321462 Query: 125 QKRMQ 129 Q RMQ Sbjct: 321461 QLRMQ 321447 Score = 26.9 bits (58), Expect = 7.1 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -1 Query: 17 SAGNQGPLINENPYVMMSVFNQGLAFLQAYGWFLLFG--FVAAMF 59 + N GPL + V +G +F +A GW ++ G F+ MF Sbjct: 157957 TGSNIGPLTFNTTFAATCVVEEGCSFGRAVGWRVVAGSPFILQMF 157823 Score = 26.6 bits (57), Expect = 9.2 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -3 Query: 72 FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKR 127 F R YY ++ EAR++ ++R + + ++R+D E +Q+ +KR Sbjct: 3045008 FRHRHQYYASKRQGRKKKKEARTINVDRRKTRERERNDG------EMCTQQDSEKR 3044859 >T.congo.pschr.5 Length = 1517473 Score = 30.0 bits (66), Expect = 0.83 Identities = 23/79 (29%), Positives = 36/79 (45%) Frame = -1 Query: 87 PEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKT 146 P++V+ + + +++ + D R E++LR EE KR +INDH A T Sbjct: 45052 PDEVKTACIRQDDIAGEMEAQSD---RRVEQQLRSNEE-KREYRINDHTDGGATHTPIAE 44885 Query: 147 SKKLDQKPDPNQATQSHIK 165 K P + T SH K Sbjct: 44884 PSKPPFPPGHIRPTVSHFK 44828 Score = 28.5 bits (62), Expect = 2.4 Identities = 21/84 (25%), Positives = 36/84 (42%) Frame = +2 Query: 72 FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKI 131 F +K D E + + RS + ARKK + + ++ EH +R + KR +++ Sbjct: 798140 FTEKKRTEDREEKIARTEELRRSKSKFEARKKKKSKLNSTHAEHSKRGKLYSMTKRSRRV 798319 Query: 132 NDHDALKAGKTQSKTSKKLDQKPD 155 LK KK ++K D Sbjct: 798320 G--AKLKVSVADRSNKKKENKKKD 798385 Score = 27.3 bits (59), Expect = 5.4 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Frame = +1 Query: 78 YYDDTENMTPEQVEARSVAMERAR------KKLQDRHDAAAREHEERLREQEEQKRMQKI 131 Y + N+ E+ E S + ++LQ RHD +EH E + K Sbjct: 1149667 YEQLSSNLRREEAERASDTQREIQQLRNKLRELQQRHDLLEKEHAHLKEEARVLREKSKS 1149846 Query: 132 NDHDALKAGKTQSKTSKKLD 151 + D ++ + + + +K+D Sbjct: 1149847 HASDLQRSRQERDQAVRKVD 1149906 >T.congo.pschr.3. Length = 1451265 Score = 30.0 bits (66), Expect = 0.83 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -1 Query: 180 PLGGGPSNSARWRPGNSRPSAGGXG 204 P GGGP+N R RP S P G G Sbjct: 1275897 PQGGGPTNGIRGRPTASTPQGGTGG 1275823 Score = 27.3 bits (59), Expect = 5.4 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +2 Query: 66 KSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLR 120 K + +FGR + + +R + + +A + + DRH A REH +R R Sbjct: 1270058 KKKEKMFGRIRCLLRGATLRELKSHLSRLMVIRQASEGVNDRHRAKLREHRQRQR 1270222 >T. Length = 839999 Score = 28.5 bits (62), Expect = 2.4 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +1 Query: 88 EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE-QKRMQKINDHDALKAGKTQSKT 146 EQ R++ +ERARK E +RLR+Q+E ++R +++ + + + Q + Sbjct: 365137 EQQRLRTL-VERARKNDPRLRRKREAEEAQRLRDQQEREERRRQVREEGERRRAEEQERE 365313 Query: 147 SKKLDQKPDPNQATQSHIKRNKES 170 K +++ ++ I++ +E+ Sbjct: 365314 RKAQEEEQRKAMDVKNTIRQAREN 365385 >T.congo.pschr4 Length = 1343510 Score = 27.7 bits (60), Expect = 4.1 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = -1 Query: 107 RHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSK---TSKKLDQKPDPNQATQSH 163 RH H ++ Q++ ++ Q+ + HD L+ G QSK T L++ P Q+H Sbjct: 463592 RHTCVRSVHYKKGDTQKDVRKYQQTHVHDVLQWGSEQSKEGLTQTALER*SQP----QTH 463425 Query: 164 IKRNKE 169 K+ ++ Sbjct: 463424 QKQKRK 463407 Score = 26.9 bits (58), Expect = 7.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 183 GGPSNSARWRPGNSRPSAGGXG 204 GGP++ WR G PSAGG G Sbjct: 807129 GGPTDV--WRQGGDTPSAGGAG 807070 Score = 26.6 bits (57), Expect = 9.2 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = +3 Query: 137 LKAGKTQSKTSKKLDQKPDPNQATQSHIK-----RNKESKPLRSSDFSPLGGGPSNSARW 191 +K+G SKT+++ ++ +H + RN S+P S S G P+ ++W Sbjct: 408660 MKSGSHCSKTAQRCGPPTTRQRSRAAHKRVVPTPRNGVSRPCPSGGLSAPGVVPTIRSKW 408839 Query: 192 RPGNSRPSAGG 202 ++ P G Sbjct: 408840 EQVDTTPKGQG 408872 Score = 26.6 bits (57), Expect = 9.2 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -1 Query: 66 KSVKNLFGRRKTYYDDTENMTPEQVEARS---VAMERARKKLQDRHDAAAREHEERLREQ 122 + V L+ R D + + E + A+ + + + +R D +EHE+ LRE Sbjct: 437105 REVLRLYANRNAPPDGVDALLKRNAELEAEMKAALAKLKGENDERMDELMKEHEKTLREL 436926 Query: 123 EEQ 125 +Q Sbjct: 436925 RQQ 436917 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.312 0.129 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,638,098 Number of Sequences: 11 Number of extensions: 56733 Number of successful extensions: 394 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 256 Number of HSP's gapped (non-prelim): 294 length of query: 204 length of database: 7,429,315 effective HSP length: 93 effective length of query: 111 effective length of database: 7,428,292 effective search space: 824540412 effective search space used: 824540412 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 57 (26.6 bits)