TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298286511|ref|NP_001177244.1| selenoprotein S [Ciona
intestinalis]
         (204 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340502869|gb|GL984136.1| Ichthyophthirius multifiliis unplace...    30   1.7  
gi|340502394|gb|GL984185.1| Ichthyophthirius multifiliis unplace...    29   3.8  
gi|340501629|gb|GL984250.1| Ichthyophthirius multifiliis unplace...    28   6.6  
gi|340505066|gb|GL983863.1| Ichthyophthirius multifiliis unplace...    28   6.6  
gi|340505144|gb|GL983849.1| Ichthyophthirius multifiliis unplace...    28   6.6  

>gi|340502869|gb|GL984136.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251175, whole genome shotgun
             sequence
          Length = 140173

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
 Frame = -1

Query: 93    RSVAMERARKKLQDRHD-----AAAREHEERLRE--QEEQKRMQKINDHDALKAGKTQSK 145
             +S +  ++RKK + +HD     ++ RE +++ RE     +K  +K + H + ++      
Sbjct: 95053 QSRSRSKSRKKDRKKHDKKYHKSSEREKKDKKREDSSHNKKNKKKYHSHSSSRSSSESQS 94874

Query: 146   TSKKLDQKPDPNQATQSHIKRNKES 170
               K + +K D   +  ++ K NK+S
Sbjct: 94873 R*KAIKKKKDKKSSYHNN-KNNKKS 94802


>gi|340502394|gb|GL984185.1| Ichthyophthirius multifiliis unplaced
            genomic scaffold scaff_1120509251224, whole genome
            shotgun sequence
          Length = 32492

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 97   MERARKKLQDRHDAAAREHEERLREQEEQ-KRMQKINDHDALKAGKTQSKTSKKLDQK 153
            +++  +K  +++    ++ EER ++ EEQ K++QK+N+    K  + +   +KK  +K
Sbjct: 8107 VDKNMEKNAEKNMEKKKKEEERKKKDEEQKKKIQKVNEEFIKKV*EEELLNNKKQSEK 7934


>gi|340501629|gb|GL984250.1| Ichthyophthirius multifiliis unplaced
            genomic scaffold scaff_1120509251289, whole genome
            shotgun sequence
          Length = 83694

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 48   WFLLFGFVAAMFVWTNIEKSVKNL 71
            WF  F ++  M +W N+++  KNL
Sbjct: 2247 WF*CFYYIFGMIMWLNLQRKFKNL 2318


>gi|340505066|gb|GL983863.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250899, whole genome shotgun
             sequence
          Length = 21331

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
 Frame = -3

Query: 101   RKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKP------ 154
             +KK + ++    +  +++ ++++++K ++K    +  K  K + K  KKL++K       
Sbjct: 10274 KKKNKRKNKKKNKRKKKKKKKRKKKKNLKKKEKKNKKKKKKKEKKEKKKLNKKSNKKKN* 10095

Query: 155   ------DPNQATQSHIKRNKESK 171
                    PN+    + K+NK +K
Sbjct: 10094 KNKNKKKPNKTKMKN*KKNKLNK 10026


>gi|340505144|gb|GL983849.1| Ichthyophthirius multifiliis unplaced
           genomic scaffold scaff_1120509250885, whole genome
           shotgun sequence
          Length = 253131

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -1

Query: 115 HEERLREQEEQKRMQKIN----DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
           + +RL+E   +K     N    ++   K  K +    KK + K   N+    HIK+NK +
Sbjct: 579 NNKRLKE*NNKKNKNNNNKLN*NNKYNKNNKNK*NNKKKYNNKNKQNKKNNKHIKKNKNN 400

Query: 171 K 171
           K
Sbjct: 399 K 397


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,708,934
Number of Sequences: 2017
Number of extensions: 69468
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 90
length of query: 204
length of database: 16,266,656
effective HSP length: 98
effective length of query: 106
effective length of database: 16,068,990
effective search space: 1703312940
effective search space used: 1703312940
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)