TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|168693663|ref|NP_001108229.1| selenoprotein S [Canis lupus
familiaris]
         (190 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340505964|gb|GL983749.1| Ichthyophthirius multifiliis unplace...    28   4.4  
gi|340499430|gb|GL984923.1| Ichthyophthirius multifiliis unplace...    28   5.8  
gi|340501357|gb|GL984285.1| Ichthyophthirius multifiliis unplace...    27   9.8  

>gi|340505964|gb|GL983749.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250725, whole genome shotgun
             sequence
          Length = 58153

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/62 (27%), Positives = 37/62 (59%)
 Frame = +1

Query: 74    VVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGNAR 133
             + +K+ +     + KM+++L  ++ KHK+K +Q ++ K RQK +  +  ++ + +K N  
Sbjct: 12508 IKIKK*KLKLKLKHKMKQKLKQKL-KHKQKQKQNKKNKLRQKKK*KNKQKQKQKHK-NKH 12681

Query: 134   KH 135
             KH
Sbjct: 12682 KH 12687


>gi|340499430|gb|GL984923.1| Ichthyophthirius multifiliis unplaced
           genomic scaffold scaff_5495, whole genome shotgun
           sequence
          Length = 1353

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = -3

Query: 88  KMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGNARKHPEE 138
           +++ E   ++EK KEK ++ E++K ++K +  +  +E +  K   ++  +E
Sbjct: 649 EIENEKENEIEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKE 497


>gi|340501357|gb|GL984285.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251324, whole genome shotgun
             sequence
          Length = 66635

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 19    LRYLHVTVGSLLATYGWYIVFSCILL 44
             L YL++++G  L T G   +F CILL
Sbjct: 13725 LIYLYISLGIYLMTLGVLFIFVCILL 13802


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.314    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,119
Number of Sequences: 2017
Number of extensions: 61812
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 210
length of query: 190
length of database: 16,266,656
effective HSP length: 97
effective length of query: 93
effective length of database: 16,071,007
effective search space: 1494603651
effective search space used: 1494603651
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)