TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|86438358|gb|AAI12741.1| Selenoprotein S [Bos taurus] (188 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.653 of Sphaeroforma arctica JP610 35 0.14 supercont1.1026 of Sphaeroforma arctica JP610 32 0.67 supercont1.341 of Sphaeroforma arctica JP610 32 1.2 supercont1.834 of Sphaeroforma arctica JP610 31 1.5 supercont1.19 of Sphaeroforma arctica JP610 31 1.5 supercont1.6 of Sphaeroforma arctica JP610 31 1.5 supercont1.255 of Sphaeroforma arctica JP610 31 2.0 supercont1.608 of Sphaeroforma arctica JP610 30 2.6 supercont1.505 of Sphaeroforma arctica JP610 30 3.3 supercont1.1765 of Sphaeroforma arctica JP610 30 4.4 supercont1.451 of Sphaeroforma arctica JP610 30 4.4 supercont1.95 of Sphaeroforma arctica JP610 30 4.4 supercont1.5200 of Sphaeroforma arctica JP610 29 5.7 supercont1.3263 of Sphaeroforma arctica JP610 29 5.7 supercont1.734 of Sphaeroforma arctica JP610 29 5.7 supercont1.3247 of Sphaeroforma arctica JP610 29 7.5 supercont1.894 of Sphaeroforma arctica JP610 29 7.5 supercont1.631 of Sphaeroforma arctica JP610 29 7.5 supercont1.240 of Sphaeroforma arctica JP610 29 7.5 supercont1.28 of Sphaeroforma arctica JP610 29 7.5 supercont1.4239 of Sphaeroforma arctica JP610 28 9.7 supercont1.3152 of Sphaeroforma arctica JP610 28 9.7 supercont1.194 of Sphaeroforma arctica JP610 28 9.7 >supercont1.653 of Sphaeroforma arctica JP610 Length = 53003 Score = 34.7 bits (78), Expect = 0.14 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Frame = +3 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHK----EKLRQLEEEKR-- 112 ++RHL Q A PD + ++AL A LK+ EEL + VE + E LR + E R Sbjct: 50865 KRRHLAQQATPPPPDSIAADRQALHARMLKLSEELCSAVEANNLPRAEALRYVLETLRAT 51044 Query: 113 -------RQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKR 152 +Q+ S E S N E D+ G ++I +R Sbjct: 51045 HDS*PANKQEPREPRSWPEWPSNWYNLSNIMERDTKGALRKTLIMRR 51185 >supercont1.1026 of Sphaeroforma arctica JP610 Length = 25636 Score = 32.3 bits (72), Expect = 0.67 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = -2 Query: 66 AAAALEPDIVVKRQE--ALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQ 123 AA L +++ R+E L AA +K+Q+E ++++++E + + S+Q Sbjct: 11352 AAIPLIKPVLICREEWSRLKAAYMKLQQEALGKLKRYQEANKSSADAANTHNNTQKTSVQ 11173 Query: 124 EGKS-YKGNTRKPQEEDSPG 142 +S YKG+ ++ + D+PG Sbjct: 11172 PIESAYKGSLKRDRNSDTPG 11113 >supercont1.341 of Sphaeroforma arctica JP610 Length = 85746 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = -1 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKH 100 ++R L Q L PD + ++AL A LK EEL + VEK+ Sbjct: 24219 KRRRLAQQITPLTPDSISADRQALHARMLKRSEELYSAVEKN 24094 >supercont1.834 of Sphaeroforma arctica JP610 Length = 39180 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 131 NTRKPQEEDSPGP-STSSVIPKRKSDRKPLRGGGYNPLSGEG 171 NT+KP+ G STS+ + + +R P + GYNP+ +G Sbjct: 18493 NTKKPRTTAGGGKGSTSTELKGERKERAPCKKCGYNPIKRDG 18618 >supercont1.19 of Sphaeroforma arctica JP610 Length = 240670 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/94 (23%), Positives = 38/94 (40%) Frame = +3 Query: 42 ILLYVVFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHK 101 ++LYV + R A D A++ V+ ++ L+ LNA+ K Sbjct: 99804 MVLYVTIALIRARADANEDEARDYKQRAIDEGYVLNQERDAHVKTLRELNVLNARFSSTK 99983 Query: 102 EKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKP 135 EKL + E + + + E ++Y G KP Sbjct: 99984 EKLAKCEADLDGTRAR----LHEAEAYTGTDHKP 100073 >supercont1.6 of Sphaeroforma arctica JP610 Length = 287964 Score = 31.2 bits (69), Expect = 1.5 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Frame = +3 Query: 52 STRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHK---------- 101 S + A ++R LDQ P+ + ++AL A LK+ EEL + VE + Sbjct: 13971 SQAVSADKRRRLDQQYTPPTPESIAADRQALHARMLKLSEELCSAVEANNLPRAEALRGV 14150 Query: 102 -EKLRQLEEEKRRQKIEMWD--SMQEGKSYKGNTRKPQEEDSPG 142 E LR + + K E + S E S + N E D+ G Sbjct: 14151 LETLRATHDSRPTTKQESREPRSWPEWPSNRYNHSNIMERDTKG 14282 >supercont1.255 of Sphaeroforma arctica JP610 Length = 100705 Score = 30.8 bits (68), Expect = 2.0 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Frame = -1 Query: 49 QKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLE 108 ++L + + ++ AA + + +A AA+ K ++E EK L E Sbjct: 52639 ERLESEAKEKAEKEAIAAAELAVRETAQREADAKLAAQEKARQEAIDNAEKAAADLYADE 52460 Query: 109 EEKRRQKIEMWDSMQEGKSYKGNT---------RKPQEEDSPGPST-------SSVIPKR 152 EE RQK+E + Q+ K T + QE+ P++ S +PKR Sbjct: 52459 EEMARQKVE--EQEQQDAECKETTTADSSDNAEEQEQEKTEQAPTSPNEKAFGSEAVPKR 52286 Query: 153 KSDRKP 158 S P Sbjct: 52285 DSSVSP 52268 >supercont1.608 of Sphaeroforma arctica JP610 Length = 56206 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -2 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKH 100 ++R L Q PD + ++AL A LK+ EEL + VEK+ Sbjct: 48234 KRRRLAQQITPPTPDSIAADRQALHARMLKLSEELCSAVEKN 48109 >supercont1.505 of Sphaeroforma arctica JP610 Length = 66328 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 52 STRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVE 98 S + A ++R LDQ P+ + ++AL A LK+ EEL + VE Sbjct: 13798 SQAVSADKRRRLDQQYTPPTPESIAADRQALHARMLKLSEELCSAVE 13938 >supercont1.1765 of Sphaeroforma arctica JP610 Length = 11466 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -3 Query: 35 WYIVFSCILLYVVFQKLSTRLRALRQRHL 63 W+IVFS L Y+V+ ++S +LRAL HL Sbjct: 8779 WHIVFST-LRYIVYFEVSYKLRALSINHL 8696 >supercont1.451 of Sphaeroforma arctica JP610 Length = 71811 Score = 29.6 bits (65), Expect = 4.4 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Frame = -2 Query: 58 LRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE 117 LR RH + EP +++ + +A RL R+K + Sbjct: 40739 LRPRHSPSKTSCTEPIVMIAMLKTMATQRLP------------------------RKKPK 40632 Query: 118 MWDSMQE---GKSYKGNTRKPQ 136 +W SM++ YKG TRKPQ Sbjct: 40631 VWISMRQLLLKVEYKGQTRKPQ 40566 >supercont1.95 of Sphaeroforma arctica JP610 Length = 159311 Score = 29.6 bits (65), Expect = 4.4 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 13/104 (12%) Frame = -3 Query: 52 STRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHK---------- 101 S + A ++R LDQ P+ + ++AL A K+ EEL + VE + Sbjct: 119922 SQSVSADKRRRLDQQYTPPTPESIAADRQALHARMFKLSEELCSAVEANSLPRAEALRGM 119743 Query: 102 -EKLRQLEEEKRRQKIEMWD--SMQEGKSYKGNTRKPQEEDSPG 142 E LR + + K E + S E S + N E D+ G Sbjct: 119742 LETLRAKHDSRPTNKQEPREPRSWLEWSSNRYNLSNIMERDTKG 119611 >supercont1.5200 of Sphaeroforma arctica JP610 Length = 2070 Score = 29.3 bits (64), Expect = 5.7 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Frame = -1 Query: 50 KLSTRLRALRQRHLDQAAAALEPDIVVKRQE-------ALAAARLKMQEELNAQVEKHKE 102 +LST LR +QR + A+ E KRQE A+ K ++ L+A++ + + Sbjct: 1362 RLSTNLRQQQQRQWGEKEASSEYVQTPKRQEKETSVPPPTLASIEKSRQALHARILQLSD 1183 Query: 103 KLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPST 145 +L Q EE + E + E +R ++ P P T Sbjct: 1182 ELCQAIEENNTARAEALRGVIETLRATLESRPVEKRPVPSPRT 1054 >supercont1.3263 of Sphaeroforma arctica JP610 Length = 3741 Score = 29.3 bits (64), Expect = 5.7 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVE 98 ++RH Q PD + ++AL A LK+ EEL + +E Sbjct: 3149 KRRHFAQQVTPPTPDSIAADRQALQARMLKLSEELCSAME 3030 >supercont1.734 of Sphaeroforma arctica JP610 Length = 46764 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 131 NTRKPQEEDSPGPSTSSVIPK-RKSDRKPLRGGGYNPLSGEG 171 NT+KP+ G S++S PK + +R P + GYN +G Sbjct: 30675 NTKKPRTTAGDGKSSTSTEPKGERKERAPCKMCGYNLTKRDG 30550 >supercont1.3247 of Sphaeroforma arctica JP610 Length = 3771 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -3 Query: 51 LSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVE 98 LS + ++R LDQ A + + + ++AL A LK+ EEL + VE Sbjct: 1267 LSQATLSEKRRRLDQQATPPKSNSIAADRQALHARLLKLSEELCSAVE 1124 >supercont1.894 of Sphaeroforma arctica JP610 Length = 33547 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 131 NTRKPQEEDSPGPSTSSVIPK-RKSDRKPLRGGGYNPLSGEG 171 NT+KP+ G ++S PK ++ +R P + GYN ++ +G Sbjct: 11874 NTKKPRTTAGGGKGSTSNEPKGKRKERAPCKKCGYNLINRDG 11999 >supercont1.631 of Sphaeroforma arctica JP610 Length = 54469 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 5 GDQLSARPTLETEGLRFLHVTVGSLLATYGWYI 37 G +S TLE EGLR++ GS +GW++ Sbjct: 35507 GTTVSGTSTLEKEGLRYVANDSGSCWDGWGWFL 35409 >supercont1.240 of Sphaeroforma arctica JP610 Length = 104488 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +1 Query: 126 KSYKGNTRKPQEEDSPGPSTSSVIPK-RKSDRKPLRGGGYNPLSGEGGG 173 K+ NT KP+ G ++S PK ++ +R P + GYN +G G Sbjct: 78424 KNTTHNTTKPRTTAGGGKGSTSTEPKGQRKERAPCKKCGYNLTKRDGKG 78570 >supercont1.28 of Sphaeroforma arctica JP610 Length = 221562 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 120 DSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRG 161 D E SYK + KP S +S++ K K++ KPL G Sbjct: 109915 DDFGEFSSYKFTSIKPSPTPERKMSANSILAKAKANLKPLTG 110040 >supercont1.4239 of Sphaeroforma arctica JP610 Length = 2617 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = -1 Query: 160 RGGGYNPLSGEGGGTCSWRPGRRG 183 RGGG LS GG C W G G Sbjct: 409 RGGGVTALSVAAGGACGWVGGEGG 338 >supercont1.3152 of Sphaeroforma arctica JP610 Length = 3964 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 131 NTRKPQEEDSPGPSTSSVIPK-RKSDRKPLRGGGYNPLSGEG 171 NT+KP+ G ++S PK ++ +R P + GYN +G Sbjct: 1532 NTKKPRTTAGGGKGSTSTEPKGKRKERAPCKRCGYNLTKRDG 1407 >supercont1.194 of Sphaeroforma arctica JP610 Length = 117799 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 161 GGGYNPLSGEGGGTCSWRPGRRGPSSGG 188 GGG G+GGG GRRG ++GG Sbjct: 11263 GGGTQAGEGQGGGEKGSGKGRRGAANGG 11346 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.314 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,627,363 Number of Sequences: 15618 Number of extensions: 330760 Number of successful extensions: 2521 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2521 length of query: 188 length of database: 40,529,447 effective HSP length: 103 effective length of query: 85 effective length of database: 38,920,793 effective search space: 3308267405 effective search space used: 3308267405 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 62 (28.5 bits)