TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|86438358|gb|AAI12741.1| Selenoprotein S [Bos taurus] (188 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_3 35 0.046 PHYCAscaffold_2 35 0.060 PHYCAscaffold_20 35 0.078 PHYCAscaffold_29 34 0.10 PHYCAscaffold_13 34 0.13 PHYCAscaffold_71 32 0.39 PHYCAscaffold_12 32 0.50 PHYCAscaffold_84 32 0.66 PHYCAscaffold_87 31 0.86 PHYCAscaffold_34 31 0.86 PHYCAscaffold_15 31 0.86 PHYCAscaffold_6 31 1.1 PHYCAscaffold_36 30 1.5 PHYCAscaffold_51 30 1.9 PHYCAscaffold_52 30 2.5 PHYCAscaffold_40 29 3.3 PHYCAscaffold_19 29 3.3 PHYCAscaffold_46 29 4.3 PHYCAscaffold_21 29 4.3 PHYCAscaffold_14 29 4.3 PHYCAscaffold_10 29 4.3 PHYCAscaffold_5 29 4.3 PHYCAscaffold_61 28 5.6 PHYCAscaffold_54 28 5.6 PHYCAscaffold_39 28 5.6 PHYCAscaffold_27 28 5.6 PHYCAscaffold_11 28 5.6 PHYCAscaffold_4 28 5.6 PHYCAscaffold_1 28 5.6 PHYCAscaffold_273 28 7.3 PHYCAscaffold_83 28 7.3 PHYCAscaffold_53 28 7.3 PHYCAscaffold_33 28 7.3 PHYCAscaffold_24 28 7.3 PHYCAscaffold_449 28 9.5 PHYCAscaffold_202 28 9.5 PHYCAscaffold_79 28 9.5 PHYCAscaffold_63 28 9.5 PHYCAscaffold_35 28 9.5 PHYCAscaffold_31 28 9.5 PHYCAscaffold_25 28 9.5 >PHYCAscaffold_3 Length = 1611504 Score = 35.4 bits (80), Expect = 0.046 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 7/69 (10%) Frame = +3 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSM-------QEGKSYK 129 K Q A RLK+QEE+ A+ E+ +E+ ++ +E ++R+++E + + QE K + Sbjct: 196290 KEQAAEERKRLKIQEEMEAK-EREEERKKEAQEREQRRELERAEQLAIEQQREQERKQRQ 196466 Query: 130 GNTRKPQEE 138 R+ +EE Sbjct: 196467 EEERRKEEE 196493 Score = 31.2 bits (69), Expect = 0.86 Identities = 16/51 (31%), Positives = 20/51 (39%) Frame = +3 Query: 126 KSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGTCS 176 +S TR P +P PSTS+ P + G NP GT S Sbjct: 529938 RSPTSTTRAPTTTSAPSPSTSAPSPSTSAPSTSTSSSGNNPSRSSNSGTTS 530090 >PHYCAscaffold_2 Length = 1925921 Score = 35.0 bits (79), Expect = 0.060 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Frame = +2 Query: 50 KLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEE 109 +L R +RQ+ + + D+ + QE+LAA R + QE + KE+LR+ EE Sbjct: 440492 QLLATARHIRQQRTEAQILREQQDL--EYQESLAADRRREQEAREQAEREEKERLRKEEE 440665 Query: 110 EK---RRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIP 150 E+ K E + ++ + YK + + + GP + + P Sbjct: 440666 ERCAEEEAKREEEEKARQEELYKAEIEVKRAKIADGPKSRTPPP 440797 Score = 28.5 bits (62), Expect = 5.6 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -1 Query: 150 PKRKSDRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSSGG 188 P+ K +R+ RGGG G GGG R RG GG Sbjct: 315617 PEEKEERRGGRGGGGG---GRGGGRGGGRGTSRGTGGGG 315510 >PHYCAscaffold_20 Length = 899172 Score = 34.7 bits (78), Expect = 0.078 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Frame = +3 Query: 56 RALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQ-----VEKHKEKLRQLEEE 110 R +RQR + AAA E ++ KR E A K + A+ E+ KEK RQ E Sbjct: 360300 RKMRQRRMQLAAAKHEKELAKKRDEDKEAQERKARRRAEAERTRVLAEEEKEKARQRALE 360479 Query: 111 KRRQKIEMWDSMQEGKSYKGNTRKPQEE 138 ++ +E + + + QEE Sbjct: 360480 AAQRDLERQQNADAWRIQTEELLRQQEE 360563 Score = 31.6 bits (70), Expect = 0.66 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 20/106 (18%) Frame = -2 Query: 54 RLRALRQRHLDQAAAALEPDIVVKRQE----------ALAAARLKMQEELNAQVEKHKE- 102 R +ALR + + D +V+RQE A+ A + K E+L + E+ E Sbjct: 372311 RAKALRAQRSMEEIKRFNEDTLVRRQEVQRKIKEEEDAVLAYQAKKAEDLKRREEEEAER 372132 Query: 103 ---------KLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEED 139 KLR ++E+ +K E+ D ++ ++ + R+ +E D Sbjct: 372131 RHEAELRCAKLRSMQEKMANEKAEL-DELRAKRAAEARERQAREAD 371997 Score = 31.2 bits (69), Expect = 0.86 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Frame = +3 Query: 54 RLRALRQRHLDQAAAALEP--DIVVKRQEALAA-----ARLKMQEELNAQVEKHKEKLRQ 106 RLRA +RHL+ A LE V+++EAL+ R + + N + +E+LRQ Sbjct: 78117 RLRAQYERHLEDLVAELEKVRQQRVEQEEALSVQVLQQIRQERDVKRNEAKRQVREELRQ 78296 Query: 107 LEEEKRRQK 115 E+E +K Sbjct: 78297 FEQELHERK 78323 Score = 29.6 bits (65), Expect = 2.5 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = -2 Query: 161 GGGYNPLSGEGGGTCSWRPGRRGPSSG 187 GGGY G GGG WR G RG G Sbjct: 172331 GGGYGGRGGRGGG---WRGGGRGAGGG 172260 >PHYCAscaffold_29 Length = 707326 Score = 34.3 bits (77), Expect = 0.10 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = -3 Query: 76 VKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMW 119 ++ ++ + R + + + ++ KEK RQLEEE +RQ+ E W Sbjct: 219284 IEHEDKRSGKRYAVDAIMEEEEQRRKEKSRQLEEESKRQRKENW 219153 Score = 27.7 bits (60), Expect = 9.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 111 KRRQKIEMWDSMQEGKSYKGNTRKPQEED 139 KR Q+ +MW Q GKS + ++RK E+ Sbjct: 350694 KRTQRSDMWSCSQWGKSGRDSSRKKLREN 350780 >PHYCAscaffold_13 Length = 1060349 Score = 33.9 bits (76), Expect = 0.13 Identities = 27/85 (31%), Positives = 43/85 (50%) Frame = +2 Query: 56 RALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQK 115 R L+Q+ + ALE I KRQ+ L A R Q E+ + +L + EEE+RRQ+ Sbjct: 643061 RKLQQQQ--EMQLALERQIEEKRQQKLEAKR--------RQEEEDRRELLRFEEEQRRQR 643210 Query: 116 IEMWDSMQEGKSYKGNTRKPQEEDS 140 E + +QE K K + + + + Sbjct: 643211 AEE-ERLQEEKRRKAEMEQQKAQQA 643282 Score = 30.0 bits (66), Expect = 1.9 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Frame = -1 Query: 74 IVVKRQEALAA---ARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKG 130 +V K E+LAA A + +ELN QVE +++ +QL R S++ +S Sbjct: 27857 VVTKMNESLAARQEALRRQNQELNQQVEAIEQRRQQLTSGSRPSSSSSTTSLRGTRSSSP 27678 Query: 131 NT----RKPQEEDSPGPSTS 146 T R+ D P T+ Sbjct: 27677 QTGSRNRRTHPADQSDPKTN 27618 >PHYCAscaffold_71 Length = 252329 Score = 32.3 bits (72), Expect = 0.39 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Frame = -2 Query: 49 QKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVE-KHKEKLRQL 107 Q+L + R +Q+ L+Q LE +++Q+ L RL+ +++ Q + + K +Q Sbjct: 114730 QRLEQQQRLEQQQRLEQQKR-LEQQQRLEQQKRLEQQRLEQEKQRQEQQRLEQQRKEKQR 114554 Query: 108 EEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKS 154 +E++RRQ+ + + + + ++ Q + G + V+P S Sbjct: 114553 QEQQRRQQEQQQRLELQRRQQEQQRQEQQHQFQRGKTLPQVVPPGSS 114413 >PHYCAscaffold_12 Length = 1145657 Score = 32.0 bits (71), Expect = 0.50 Identities = 24/81 (29%), Positives = 40/81 (49%) Frame = -1 Query: 80 EALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEED 139 E L A +QEE+ E+ KE LRQ + R Q + + G + + ++ QE Sbjct: 67760 EFLTAQVRDLQEEMKTVKEQLKEILRQQADSTRNQVDSL---VSPGFTIRRHSTPLQEII 67590 Query: 140 SPGPSTSSVIPKRKSDRKPLR 160 + GP++++V +R D P R Sbjct: 67589 TEGPASNTVPEERNLDDTPHR 67527 Score = 29.3 bits (64), Expect = 3.3 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 20/115 (17%) Frame = +1 Query: 44 LYVVFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQ------------- 90 L + ++++TR R Q H D +E ++ K E L +++++ Sbjct: 822859 LVALTEEITTRERERAQEHFDANVEVMEQELTAKWTEKLEEQQIELENNFVQEKTSLIAS 823038 Query: 91 --EELNAQV----EKHKEKLRQLEEEKRRQKIEMW-DSMQEGKSYKGNTRKPQEE 138 EE +A + + H+E+ QLE+E W D +QE +TR+ + E Sbjct: 823039 LVEEKDAALGLLRQAHEEQRVQLEKE--------WSDQLQEVARTNADTREQELE 823179 >PHYCAscaffold_84 Length = 182275 Score = 31.6 bits (70), Expect = 0.66 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 73 DIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQK 115 D V KR E A R + +EEL + E+ ++K ++ +EEKR + Sbjct: 89054 DKVYKRMEQRAVERKQRREELKRKYEELEQKKKKEQEEKREAR 89182 >PHYCAscaffold_87 Length = 182599 Score = 31.2 bits (69), Expect = 0.86 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +3 Query: 88 KMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSS 147 +M+ L++ H ++LRQL+++KRR E S++ K + Q + T Sbjct: 62769 EMENHLSSYDHHHTKRLRQLQQQKRRVGSEEEQSVKRRKEQQQEELMLQRRITAQTKTVR 62948 Query: 148 VIPKRKSD 155 P KSD Sbjct: 62949 SSPTSKSD 62972 >PHYCAscaffold_34 Length = 622686 Score = 31.2 bits (69), Expect = 0.86 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Frame = +1 Query: 51 LSTRLRALRQRHLDQAAAALEPDIVV-------KRQEALAAARLKMQEELNAQVEKHKEK 103 L+T L A Q + E DI V + QE Q+E+N E+H+ + Sbjct: 58015 LATALAAQEQEAWETIQRKQEEDIRVLQEQKHQQEQERAKRQHQLAQKEMNRLQEEHERE 58194 Query: 104 LRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPS 144 LR L +++ + +Q+ + + ++ QEE++ S Sbjct: 58195 LRALTTSLAQEQARQEEKLQQRIAQRRARKQRQEEEAAATS 58317 Score = 29.6 bits (65), Expect = 2.5 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%) Frame = +2 Query: 76 VKRQEALAAARLKMQEELNA----QVEKHK-----EKLRQLE----EEKRRQKIEMWDSM 122 VKR+E +++EEL Q EK K EK+RQ E +E+ R++ E M Sbjct: 392867 VKRREEELREEERLREELRKQKQFQEEKKKKRMFEEKIRQEEIMRQQEEARRQAEAQALM 393046 Query: 123 QEGKSYKGNTRKPQEEDSPGPSTSSVIP 150 EG + ++ PG +TSS+ P Sbjct: 393047 HEGNRFVSQAQQVL-HTQPGFATSSLAP 393127 Score = 29.3 bits (64), Expect = 3.3 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +1 Query: 49 QKLSTRL---RALRQRHLDQAAA--ALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEK 103 +KL R+ RA +QR ++AAA A E + +EA A + Q+E A+ + E Sbjct: 58243 EKLQQRIAQRRARKQRQEEEAAATSAKEQQSIADAEEAARLAAERDQQEALAEAQAQAEA 58422 Query: 104 LRQLEEEKRRQKI 116 EEK RQ+I Sbjct: 58423 EA---EEKERQEI 58452 Score = 27.7 bits (60), Expect = 9.5 Identities = 16/79 (20%), Positives = 43/79 (54%) Frame = +2 Query: 56 RALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQK 115 R L+++ L + E ++ ++ L + ++ EEL + EK + ++++ EEE R ++ Sbjct: 392726 RLLQEKRLQEEKQQQEEQRRIEEEKRLQKEQ-RLLEELQRENEKQQREVKRREEELREEE 392902 Query: 116 IEMWDSMQEGKSYKGNTRK 134 + + +++ K ++ +K Sbjct: 392903 -RLREELRKQKQFQEEKKK 392956 >PHYCAscaffold_15 Length = 1032281 Score = 31.2 bits (69), Expect = 0.86 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Frame = +2 Query: 47 VFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ 106 + ++LSTR+ +QR+ ++ R+E R++ +EE E+ +++ + Sbjct: 897188 MLERLSTRVAHAKQRYEEEQERL--------REEEEEKERIRREEE----AERERQRQLE 897331 Query: 107 LEEEKRRQKIEMWDS--MQEGKSYKGNTRKPQEED 139 +EEE RRQ+ E + + E K + ++ +EE+ Sbjct: 897332 VEEELRRQEEEEAEEARIAEEKEREERAQREREEE 897436 Score = 29.3 bits (64), Expect = 3.3 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 9/110 (8%) Frame = -3 Query: 86 RLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPST 145 R M+E L+ E +L +E+ RQ+ Q G T + + P PS Sbjct: 895866 RAAMREFLSRAAED--SELSVVEQPSHRQEQPKTPQSQAA----GWTEQQVRHEWPSPSV 895705 Query: 146 SSVIPKRKSDRKPLRGGGYNPLSGEGGGTC---------SWRPGRRGPSS 186 P R + P R E TC SW PGR P+S Sbjct: 895704 PPQTPTRAAPEAPERQQDPASQPHEANTTCTVRKHGRAGSWTPGRSAPAS 895555 Score = 28.1 bits (61), Expect = 7.3 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%) Frame = -3 Query: 71 EPDIVVKRQEALAAARLKMQEELNA------QVEKHKEKLRQLEEEKRRQKIEMWDSMQE 124 E + + KR E + ++ +E+L Q+E+ K+ L+ LEE + + K+EM Sbjct: 367794 EDEELEKRTERIEEHVVETEEKLTTLETQVTQIERTKKALKYLEENETK-KVEMETETVV 367618 Query: 125 GKSYKGNTRKPQEE 138 S K N +K + E Sbjct: 367617 KSSKKKNKKKKKTE 367576 Score = 27.7 bits (60), Expect = 9.5 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = -2 Query: 49 QKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLE 108 Q+L+TR+ H D+ A+LE QE A + + E + ++ LE Sbjct: 436363 QQLTTRVINQFPEHSDEEPASLEVGEQQMAQELTTAGHPEARGEFMDEQQRRYVDREPLE 436184 Query: 109 EEKRR---QKIEMWDSMQEGKSYKGNTRKPQE 137 E RR Q E S G+ Y+ R+P E Sbjct: 436183 ERIRRSPDQHEERRASENTGREYR---RRPHE 436097 >PHYCAscaffold_6 Length = 1423605 Score = 30.8 bits (68), Expect = 1.1 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Frame = -2 Query: 46 VVFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEE------LNAQVEK 99 V+ ++ +L + A AA ++ V E + ARL+ +EE L Q+E Sbjct: 926033 VIGDLVTAQLAMAELMKMQHAFAARPSEVRVMELEKMNEARLREEEEKTKQRGLELQIEI 925854 Query: 100 HKEKLRQLEEEKRRQK 115 + K RQLE E R++ Sbjct: 925853 QRTKRRQLEMEFEREE 925806 Score = 28.5 bits (62), Expect = 5.6 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 95 AQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGK 126 +QV ++ KLRQ + +R K+ MW + QE + Sbjct: 992121 SQVSRNALKLRQSRKLLKRSKLRMWANSQESR 992026 >PHYCAscaffold_36 Length = 679425 Score = 30.4 bits (67), Expect = 1.5 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Frame = +2 Query: 86 RLKMQEELNAQVEKHKEKLRQLEEEKRRQKI---EMWDSMQEGKSYKGNT-------RKP 135 R+K Q L ++ +EKL QLE+E++ + + ++ QE + + G T + Sbjct: 602297 RVKKQRRL----QEKQEKLDQLEQERKHGTVQFQQQQEAGQEAEEFAGKTDGAETSATQL 602464 Query: 136 QEEDSPGPSTSSVIPKRKSDRKPLRGGG 163 +EE P + S V P++ + G G Sbjct: 602465 EEETRPVETPSKVKPQQTESNQDDHGSG 602548 >PHYCAscaffold_51 Length = 529628 Score = 30.0 bits (66), Expect = 1.9 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +2 Query: 136 QEEDSPGPSTS-SVIPKRKSDRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSSGG 188 +EE S G + S S+ P + +PL GGG GE GG R SGG Sbjct: 38657 EEEPSLGATQSGSMPPALPGEIRPLGGGGAAASGGEAGGDAGEAERRAWRGSGG 38818 >PHYCAscaffold_52 Length = 444141 Score = 29.6 bits (65), Expect = 2.5 Identities = 27/100 (27%), Positives = 45/100 (45%) Frame = +1 Query: 52 STRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEK 111 STR RQR ++V A AAA++K +E+ + ++ KE+ + E+E+ Sbjct: 79357 STRSTRKRQRQ----------EVV----PAAAAAKVKKVKEVQKEQQEEKEQKEKKEKEQ 79494 Query: 112 RRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPK 151 + +K E K K +K ++E P T PK Sbjct: 79495 QEEK--------EQKEKKEKEQKEEKELEPPAKTHKPEPK 79590 >PHYCAscaffold_40 Length = 570383 Score = 29.3 bits (64), Expect = 3.3 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGK-SYKGNTRKP 135 +R++A AAR ++ L A + +++ +EEE+RRQ+ + GK +Y GN K Sbjct: 367537 QRRKAEEAAREAEKQRLAALQQAEAMRIKAVEEERRRQE-------ENGKRNYDGNRLKS 367379 Query: 136 -----------QEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEG------GGTC 175 E D S K R +G GY L G G TC Sbjct: 367378 LSGCGSNS*QRNEHDKLVKLLSKRNDKHSWLRSGQKGRGYAALKSSGLLF*S*GSTC 367208 >PHYCAscaffold_19 Length = 944885 Score = 29.3 bits (64), Expect = 3.3 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 12/149 (8%) Frame = +3 Query: 2 ERDGDQLSARPTLETEGLRFLHVTVGSLLATYGWYIVFSCILLYVVFQKLSTR------L 55 E L++R T L L SLLA+ + ++++TR L Sbjct: 804711 EAQSSSLASRTTALKSDLEALETRYASLLASAKTH------------EEIATRATREGQL 804854 Query: 56 RALRQRHLDQAAAALEP---DIVVKRQEALAAARLKMQEELNAQVEKHK---EKLRQLEE 109 RA R L + L ++ +K Q L A +QE+L + EK EKL+QLEE Sbjct: 804855 RAEEVRLLRNESDQLRACNVELKMKTQVELEA----LQEQLRVRKEKQYQLLEKLQQLEE 805022 Query: 110 EKRRQKIEMWDSMQEGKSYKGNTRKPQEE 138 KR+ ++ + E K+ K + R + E Sbjct: 805023 AKRQSDDQL--ASAEDKARKLHARNQELE 805103 >PHYCAscaffold_46 Length = 525601 Score = 28.9 bits (63), Expect = 4.3 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = -2 Query: 131 NTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGT-----CSWRP 179 NTR + E P ++ V P + P RGGG P + GT CS+ P Sbjct: 166314 NTRTTRAEWPGAPRSAPVGPYASAQ*SPARGGGSRPGTTRHAGTGSAICCSYAP 166153 >PHYCAscaffold_21 Length = 930814 Score = 28.9 bits (63), Expect = 4.3 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -3 Query: 77 KRQEALAAARLKMQ--EELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRK 134 K+QE + R K Q ++ N++ +HK+ + +R+ K E W S + S+ T++ Sbjct: 412484 KKQEKHSNGRNKDQRGDKTNSK-SQHKDTKENSDRSERKSKSEKWCSFHKTSSHSTQTKQ 412308 Query: 135 PQEEDSP 141 + +P Sbjct: 412307 TSSKRTP 412287 >PHYCAscaffold_14 Length = 1100894 Score = 28.9 bits (63), Expect = 4.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -3 Query: 112 RRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRK 153 +RQK WD G + +G T P + P P S+ P+ K Sbjct: 474453 QRQKARSWDEQAPGTAPRGRT--PTQTPCPSPQPSAAGPRPK 474334 >PHYCAscaffold_10 Length = 1190366 Score = 28.9 bits (63), Expect = 4.3 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = -2 Query: 96 QVEKHKEKLRQLEEEKRRQKIEMWDSM--QEGKSY 128 Q K +E+L++LEEEKRR++ E Q GKS+ Sbjct: 477997 QFTKEQERLKRLEEEKRRKEEENHTKAKNQTGKSW 477893 Score = 28.1 bits (61), Expect = 7.3 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 18/84 (21%) Frame = -3 Query: 52 STRLRALRQRHLDQAAAAL--------------EPDIVVKRQEA-LAAARLKMQEELNAQ 96 S R+ A ++R +QAA A E I V ++A L A + Q E+ Q Sbjct: 899451 SVRVSAEKERFENQAAMAAPTKRTIDTFIVPESEVSIRVAAEKAKLEALEKEKQREMEEQ 899272 Query: 97 VEKHKEKL---RQLEEEKRRQKIE 117 E ++KL +QL EEK R + E Sbjct: 899271 AEMERQKLERAQQLAEEKARLEAE 899200 Score = 27.7 bits (60), Expect = 9.5 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = -2 Query: 130 GNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSSGG 188 G + Q PG S + + R + R+PL GGG +PL EGG T G S GG Sbjct: 312259 GERQLLQRRRGPGLSDTQWVD-RVAPREPLVGGGDSPL--EGGET---ETGENRDSDGG 312101 >PHYCAscaffold_5 Length = 1593284 Score = 28.9 bits (63), Expect = 4.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKP 135 +R+E R++M+ + KEKL QL+EEKR + + +Q K Y ++ P Sbjct: 775438 QREEEELRRRVQMKRHDALHNARQKEKLLQLKEEKRIAR----EIIQAAKGYNSVSKAP 775274 Score = 28.1 bits (61), Expect = 7.3 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = +3 Query: 106 QLEEEKRRQKIEMWDSMQ---EGKSYKGNTRKPQEEDSPGPSTSSVI---PKRKSDRKPL 159 +L++ KRR+ + + + +GK + + + P+ P + S+V KRK + P Sbjct: 1578837 RLDDYKRRKLTDGSHAPRGDAKGKPAEASFKSPRPHGKPSRAKSNVAIVERKRKPTKAPR 1579016 Query: 160 RGGGYNPLSGEGGGTCSW 177 RGG + GE G T + Sbjct: 1579017 RGGVVCFICGEEGHTAKY 1579070 >PHYCAscaffold_61 Length = 347729 Score = 28.5 bits (62), Expect = 5.6 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = +2 Query: 82 LAAARLK--MQEELNAQVEKHKEKLRQLEEEKRRQKI 116 +AAA+ K ++E A+ E K++ ++LEE KRR+++ Sbjct: 31292 IAAAKQKEDAEKEKQARREAKKQRAKELEETKRREEV 31402 >PHYCAscaffold_54 Length = 427428 Score = 28.5 bits (62), Expect = 5.6 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +1 Query: 121 SMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGTCSWRPG 180 S Q + G+T+ E PGP S+ P +++P GG P S GG C R Sbjct: 248209 SCQRPSHHPGSTQTGAGEH-PGP*RSTQAPCPAGNQQPSPGGPRPPWSCGRGGPCQRRRS 248385 Query: 181 R 181 R Sbjct: 248386 R 248388 >PHYCAscaffold_39 Length = 591971 Score = 28.5 bits (62), Expect = 5.6 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -1 Query: 70 LEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEM 118 L+PD KR + A R K +E + ++ KE QLE++ R+ ++E+ Sbjct: 114809 LKPDTGAKRALSKALRREKQREGMVRLRKRQKEWAIQLEKDTRQLRVEV 114663 >PHYCAscaffold_27 Length = 705730 Score = 28.5 bits (62), Expect = 5.6 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 118 MWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGG 162 +WD +GK KG RK +E+D P+ +P D+KP G Sbjct: 20535 VWDFATDGKRRKGPERKRREDDLLLPAFP--LPVAIGDKKPPTAG 20663 >PHYCAscaffold_11 Length = 1076090 Score = 28.5 bits (62), Expect = 5.6 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 95 AQVEKHKEKLRQLEEEKRRQKIEMWDSMQE 124 +QV ++ KLRQ + +R K+ MW + QE Sbjct: 1060922 SQVSRNALKLRQFRKLLKRSKLRMWANSQE 1061011 Score = 28.1 bits (61), Expect = 7.3 Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Frame = -3 Query: 60 QRHLDQAAAALEPDIVVKRQEAL-----AAARLKMQEELNAQVEKHKEKLRQLEEEKRRQ 114 QR+L QA+ A + + + +A R++ Q+E + + + +E+LRQ+ Sbjct: 72348 QRNLQQASIARSETRIAELVRGIINQHDSAMRVRQQQESDVRNDHIEERLRQV------- 72190 Query: 115 KIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPL 159 + + + E K+ + Q D+PGP+++S + P+ Sbjct: 72189 -VTVAKTAAESKAREVMA---QRSDAPGPASTSAATAKSKQVPPV 72067 >PHYCAscaffold_4 Length = 1587695 Score = 28.5 bits (62), Expect = 5.6 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +2 Query: 70 LEPDIVVKRQEALAAARLKMQEELNAQVEKHK----EKLRQLEEEKRRQKIEMWDSMQEG 125 ++P V K+ A +K QEEL A+ E+ + EKL + E RR E Q+G Sbjct: 584069 MKPVFVPKK----ARGTVKRQEELAAEEERRQMREQEKLETRKMESRRLVAEEIQREQDG 584236 Query: 126 KSYKGNTRKPQEEDSPG 142 + +T +D+ G Sbjct: 584237 ANKDDSTDVEMPDDTDG 584287 Score = 28.5 bits (62), Expect = 5.6 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Frame = -2 Query: 96 QVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQE-EDSPGPSTSSVIPKRKS 154 QVE+ +EKL L + + D + + G R+ + E S GP+ + + Sbjct: 391 QVERPEEKLHSLSDTTVTSSQDSDDGNEPTRRRSGRRRRRESAESSVGPNDDTTGIRYTD 212 Query: 155 DRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSS 186 ++ + GG +P S G +W G SS Sbjct: 211 EQTKRKQGGNSPFS-LVSGVLTWIKACAGGSS 119 >PHYCAscaffold_1 Length = 2170955 Score = 28.5 bits (62), Expect = 5.6 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQE 124 KRQE A L QEE N E+ + L++ E K R+ +++ ++E Sbjct: 1148300 KRQELQLARELAEQEESNLMREEKYQSLQEEAEAKARKLKKVYTKVKE 1148443 Score = 28.1 bits (61), Expect = 7.3 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = +3 Query: 18 GLRFLHVTVGSLLATYGWYIVFSC 41 G+ F+H G+ + + WY +F+C Sbjct: 2065683 GIAFVH*NTGNKVLVHNWYTIFTC 2065754 Score = 27.7 bits (60), Expect = 9.5 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = +3 Query: 130 GNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSSGG 188 G + Q PG S + + R + R+PL GGG +PL EGG T G S GG Sbjct: 1893255 GERQLLQRRRGPGLSDTQWVD-RVAPREPLVGGGDSPL--EGGET---ETGENRDSDGG 1893413 >PHYCAscaffold_273 Length = 8874 Score = 28.1 bits (61), Expect = 7.3 Identities = 23/90 (25%), Positives = 42/90 (46%) Frame = -1 Query: 58 LRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE 117 L +R ++ A A D++ + L A R E+L AQ+ +++ +L+ E KIE Sbjct: 8355 LGRRDMEIADMARAEDVLRRDLGVLVAER----EDLAAQISSANDEVDRLQVEVGAAKIE 8188 Query: 118 MWDSMQEGKSYKGNTRKPQEEDSPGPSTSS 147 + + + +G+ Q PG S S+ Sbjct: 8187 IEELQYTLRLTEGSLAYAQRSVDPGHSGSA 8098 >PHYCAscaffold_83 Length = 185922 Score = 28.1 bits (61), Expect = 7.3 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +3 Query: 80 EALAAARLKMQ--EELNAQVEKHKEKLRQLEEEKRRQK 115 +AL +AR Q EEL+A++EK E+L L ++K+ K Sbjct: 33708 DALVSARKTKQTPEELDAEIEKLNEELDNLMKKKKLDK 33821 >PHYCAscaffold_53 Length = 465517 Score = 28.1 bits (61), Expect = 7.3 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Frame = +2 Query: 53 TRLRALRQRHLDQAAAALEPDIVVKRQEALAAARL-KMQEELNAQVEKHKEKLRQLEEEK 111 TR Q LDQ E V +R+ AR +++ E N Q E+ + L +LE EK Sbjct: 295451 TRQARTHQSLLDQGKNPYE---VARRKVVQREARKERIKIERNIQ-EREAKLLERLEAEK 295618 Query: 112 ----RRQKIEMWDSMQEGKSYKGNTRKPQEE 138 RR+K+E + E K + R QEE Sbjct: 295619 VIQRRREKVEAQNREYEKKYQREMGRAAQEE 295711 >PHYCAscaffold_33 Length = 640966 Score = 28.1 bits (61), Expect = 7.3 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +1 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE 117 R RH QAA ALE I V + EA R A + +E+L ++ +R Q+IE Sbjct: 580720 RLRHYGQAAFALELFIYVSKPEAQTLRR--------ASAARIQEQLPRVAAFRREQQIE 580872 Score = 27.7 bits (60), Expect = 9.5 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 Query: 87 LKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQE 124 L++ E EKH + LR++E EKR + I + ++E Sbjct: 438885 LELSESSRVAQEKHAQLLRRMEAEKRARSIAVPTIVEE 438998 >PHYCAscaffold_24 Length = 787421 Score = 28.1 bits (61), Expect = 7.3 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +2 Query: 80 EALAAARLKMQ--EELNAQVEKHKEKLRQLEEEKRRQK 115 +AL +AR Q EEL+A++EK E+L L ++K+ K Sbjct: 265490 DALVSARKTKQTPEELDAEIEKLNEELDNLMKKKKLDK 265603 >PHYCAscaffold_449 Length = 3984 Score = 27.7 bits (60), Expect = 9.5 Identities = 26/106 (24%), Positives = 50/106 (47%) Frame = -1 Query: 50 KLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEE 109 +++T + +R ++ A A D++ + L A R E+L AQ+ +++ +L+ Sbjct: 3537 QIATLQDRVGRRDMEIADMARVEDVLRRDLGVLVAER----EDLAAQISTANDEVDRLQA 3370 Query: 110 EKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSD 155 E KIE+ + + +G+ Q PG S SV + +SD Sbjct: 3369 EVGAAKIEIEELQYTLRLTEGSLAYAQRSVDPGHS-GSVAAEPQSD 3235 >PHYCAscaffold_202 Length = 11785 Score = 27.7 bits (60), Expect = 9.5 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +2 Query: 59 RQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE 117 R RH QAA ALE I V + EA R A + +E+L ++ +R Q+IE Sbjct: 3638 RARHYGQAAFALELLIYVPKPEAQTLRR--------ASAARIQEQLPRVAAFRREQQIE 3790 >PHYCAscaffold_79 Length = 222129 Score = 27.7 bits (60), Expect = 9.5 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 73 DIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWD 120 D RQE ARL QE ++ +VE H + QL + R Q +++ D Sbjct: 188461 DTKTSRQEGSPCARLGAQEGMHLEVEIH-S*IYQLPHKPRDQHLQLHD 188321 Score = 27.7 bits (60), Expect = 9.5 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -2 Query: 73 DIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWD 120 D RQE ARL QE ++ +VE H + QL + R Q +++ D Sbjct: 181739 DTKTSRQEGSPCARLGAQEGMHLEVEIH-S*IYQLPHKPRDQHLQLHD 181599 >PHYCAscaffold_63 Length = 355987 Score = 27.7 bits (60), Expect = 9.5 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -2 Query: 68 AALEPDIVVKRQEAL--AAARLKMQEELNAQVEKHKEKLRQLEEEKRRQ 114 A++E + V+ E AAA+ K EEL A+++ EKLR E+ +R+ Sbjct: 123114 ASIEKKVEVETPEGDEDAAAKAKEYEELVARLQAENEKLRTRVEKFKRK 122968 >PHYCAscaffold_35 Length = 603175 Score = 27.7 bits (60), Expect = 9.5 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 158 PLRGGGYNPLSGEGGGTCSWRPGRRG 183 P R GG S GGG C W+ + G Sbjct: 527055 PPREGGQGETSAAGGGYCEWQSAQDG 527132 >PHYCAscaffold_31 Length = 686815 Score = 27.7 bits (60), Expect = 9.5 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +3 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTR 133 K+ E R K+Q+ +VEK EK +QLE+ + K + D+ ++ YK R Sbjct: 317268 KQLEENEEMRKKLQQS-QEEVEKAAEKRKQLEKHISQLKNDRGDARKDAYCYKRQLR 317435 >PHYCAscaffold_25 Length = 841216 Score = 27.7 bits (60), Expect = 9.5 Identities = 26/100 (26%), Positives = 45/100 (45%) Frame = -1 Query: 60 QRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMW 119 +R ++ A A DI+ + L A R E+L AQ+ +++ +L+ E KIE+ Sbjct: 640444 RRDMEIADMARVEDILRRDLGILVAER----EDLAAQISSANDEVDRLQAEVGAAKIEIE 640277 Query: 120 DSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPL 159 + + +G+ Q PG S S + + D PL Sbjct: 640276 ELQYTLRLTEGSLAYAQRAVDPGHS-GSATAEPQPDTSPL 640160 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.314 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,016,163 Number of Sequences: 917 Number of extensions: 210166 Number of successful extensions: 1482 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 172 Number of HSP's successfully gapped in prelim test: 79 Number of HSP's that attempted gapping in prelim test: 720 Number of HSP's gapped (non-prelim): 1158 length of query: 188 length of database: 21,341,249 effective HSP length: 99 effective length of query: 89 effective length of database: 21,250,466 effective search space: 1891291474 effective search space used: 1891291474 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (27.7 bits)