TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|56972261|gb|AAH88768.1| selenoprotein S [Xenopus (Silurana) tropicalis] (187 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.5537 of Sphaeroforma arctica JP610 34 0.18 supercont1.3078 of Sphaeroforma arctica JP610 33 0.51 supercont1.138 of Sphaeroforma arctica JP610 31 1.5 supercont1.738 of Sphaeroforma arctica JP610 30 2.5 supercont1.417 of Sphaeroforma arctica JP610 30 2.5 supercont1.2983 of Sphaeroforma arctica JP610 30 3.3 supercont1.7290 of Sphaeroforma arctica JP610 30 4.3 supercont1.5748 of Sphaeroforma arctica JP610 30 4.3 supercont1.874 of Sphaeroforma arctica JP610 29 5.6 supercont1.1747 of Sphaeroforma arctica JP610 29 7.4 supercont1.383 of Sphaeroforma arctica JP610 29 7.4 supercont1.68 of Sphaeroforma arctica JP610 29 7.4 supercont1.45 of Sphaeroforma arctica JP610 29 7.4 supercont1.26 of Sphaeroforma arctica JP610 29 7.4 supercont1.10 of Sphaeroforma arctica JP610 29 7.4 supercont1.48 of Sphaeroforma arctica JP610 28 9.6 >supercont1.5537 of Sphaeroforma arctica JP610 Length = 1937 Score = 34.3 bits (77), Expect = 0.18 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = -3 Query: 78 EAVTAARLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPS 137 +A A+ + Q ++ AQA+ Q QVQ Q + +Q+ R + G+ S + L S Sbjct: 624 KAQAQAQAQAQAQVQAQAQAQTQAQVQAQAQLQQKPQPQPQRQETGRGSAGSQSLLTANS 445 Query: 138 PSTSTSAATKPKQEKQERKTLRGSGYN-PLTG 168 P A K + ++G+G N PL G Sbjct: 444 PRQQLVKAQKSPLLSANQSHMQGNGRNSPLMG 349 Score = 28.5 bits (62), Expect = 9.6 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Frame = -3 Query: 60 GTSNHSTVTDPDEIVRRQ-EAVTAARLRMQEELNAQAELYKQKQVQLQ-EEKRQRNIETW 117 G +N + V + Q +A A+ + Q + AQA+ Q QVQ Q + + Q ++ Sbjct: 717 GYANQAGVAQMAAYTQAQAQAQAQAQAQAQAKAQAQAQAQAQAQVQAQAQAQTQAQVQAQ 538 Query: 118 DRMKEGKSSKVACR-LGQEPSPSTSTSAATKPKQE--KQERKTLRGSGYNPLTGDGGGTC 174 ++++ + + G+ + S S A P+Q+ K ++ L + + + G+ Sbjct: 537 AQLQQKPQPQPQRQETGRGSAGSQSLLTANSPRQQLVKAQKSPLLSANQSHMQGN----- 373 Query: 175 AWRPGRRGPSSGG 187 GR P GG Sbjct: 372 ----GRNSPLMGG 346 >supercont1.3078 of Sphaeroforma arctica JP610 Length = 4107 Score = 32.7 bits (73), Expect = 0.51 Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Frame = +1 Query: 75 RRQEAVTAARLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQ 134 ++Q+A A+ + Q + AQA++ Q Q+QLQ++++ + + + ++ + + + Q Sbjct: 2185 QQQQAQAQAQAQAQAQAQAQAQVQAQAQLQLQQQQQLHHHQQQQQQQQQQQQQQ--QQQQ 2358 Query: 135 EPSPSTSTSAATKPKQEKQERKTLRGSGYNP-------LTGDGGGT 173 + +Q++Q+++ + G P LT G GT Sbjct: 2359 QQQQQQQQQQQQHQQQQQQQQQHMHQHGPKPIQPAPPGLTHSGSGT 2496 >supercont1.138 of Sphaeroforma arctica JP610 Length = 136492 Score = 31.2 bits (69), Expect = 1.5 Identities = 18/84 (21%), Positives = 40/84 (47%) Frame = -2 Query: 74 VRRQEAVTAARLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLG 133 + +Q+ + + Q++ Q + +Q+Q Q Q++++Q++ E W R + + L Sbjct: 77562 LHQQQQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQHREKWHRRHQSYNYAPPAALQ 77383 Query: 134 QEPSPSTSTSAATKPKQEKQERKT 157 + S ++TSA Q + T Sbjct: 77382 RTLSARSTTSAGAVKLQNTTQPHT 77311 >supercont1.738 of Sphaeroforma arctica JP610 Length = 46211 Score = 30.4 bits (67), Expect = 2.5 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Frame = -3 Query: 8 GPGNRPEIELEWYQYLQNTVGV--------VLSSYGWYILLGCILIYLLIQKLPQNFTRA 59 GP R I W+ + N +GV + Y W L+GCI++ + P F++ Sbjct: 31845 GPQRRR*ICFAWFVFGNNELGVLN*IE*HCISLGYCWVFLIGCIVL*KFVNP*PHTFSQI 31666 Query: 60 GTSNHS 65 + +S Sbjct: 31665 HPTRNS 31648 >supercont1.417 of Sphaeroforma arctica JP610 Length = 75923 Score = 30.4 bits (67), Expect = 2.5 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = -2 Query: 63 NHSTVTD--PDEIVRRQEAVTAARLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRM 120 +HST T+ P + R++ +R R + ++K V QE QR Sbjct: 68374 HHSTWTEGQPHPVARQRGQQKFSRTRPAARIRRAGSIFKSLPVGRQESLHQRM------- 68216 Query: 121 KEGKSSKVACRLGQEPSPST 140 G++S C GQ+ P+T Sbjct: 68215 --GRTSPAQCSRGQQTQPAT 68162 >supercont1.2983 of Sphaeroforma arctica JP610 Length = 4324 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 39 LLGCILIYLLIQKLPQNFTRAGTSNHSTVTDPDEIVRRQE 78 L+ C+L L+++LP++ S H V P E++RR + Sbjct: 2956 LIPCVLFIDLLRRLPRHMCANRQSVHEDVQHPGELLRRSQ 2837 >supercont1.7290 of Sphaeroforma arctica JP610 Length = 1463 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +1 Query: 100 QKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQ 134 Q Q L++ +R+R+ + W+R+ + SK A RLG+ Sbjct: 349 QAQAHLEQNQRKRH-QIWERLAQKHRSKAAARLGR 450 >supercont1.5748 of Sphaeroforma arctica JP610 Length = 1860 Score = 29.6 bits (65), Expect = 4.3 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -1 Query: 98 YKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPSPSTSTSAATKPKQEKQERKT 157 Y + VQ Q +++Q DR K ++ ++A S P + ++ + Sbjct: 1020 YCELIVQKQRDEQQAADRLDDRQKS-RAQELASH------GSVDNMKVMSPSRLRERLRA 862 Query: 158 LRGSGYNPLTGDGGGTCAW 176 RG GY+P G TC W Sbjct: 861 ERGMGYDPNNRSVGNTCVW 805 >supercont1.874 of Sphaeroforma arctica JP610 Length = 34849 Score = 29.3 bits (64), Expect = 5.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 36 WYILLGCILIYLLIQKLPQNFTRAG 60 +YI+ GC+ +YLL LP++ R G Sbjct: 17707 YYIIYGCLFVYLLNVSLPRHVCRHG 17781 >supercont1.1747 of Sphaeroforma arctica JP610 Length = 11617 Score = 28.9 bits (63), Expect = 7.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 143 SAATKPKQEKQERKTLRGSGYNPLTGDG 170 S +T+PK E++ER+ + GYN DG Sbjct: 10630 STSTEPKDERKEREPCKKCGYNLTKRDG 10547 >supercont1.383 of Sphaeroforma arctica JP610 Length = 80193 Score = 28.9 bits (63), Expect = 7.4 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = +1 Query: 137 SPSTSTSAATKPKQEKQERKTLRGSGYNPLTGDGGGTC-AWRPG 179 S S STS P++ Q R + R S G G C WRPG Sbjct: 12154 SLSLSTSRTPPPRRRTQSRVSYRSSHSTHPPGPPSGPCPKWRPG 12285 >supercont1.68 of Sphaeroforma arctica JP610 Length = 178731 Score = 28.9 bits (63), Expect = 7.4 Identities = 16/87 (18%), Positives = 40/87 (45%) Frame = +3 Query: 50 QKLPQNFTRAGTSNHSTVTDPDEIVRRQEAVTAARLRMQEELNAQAELYKQKQVQLQEEK 109 Q++ Q + + ++Q+ + + Q +L Q +L +QKQ QLQ+++ Sbjct: 101862 QQMQQQLQHQQIQQQQHIQQQQQQQQQQQQQQQQQQQQQHQLIQQQQLQQQKQQQLQQQQ 102041 Query: 110 RQRNIETWDRMKEGKSSKVACRLGQEP 136 Q+ + + ++ + + + Q+P Sbjct: 102042 IQQQQQQQQQQQQQQQQQQQQQQQQQP 102122 >supercont1.45 of Sphaeroforma arctica JP610 Length = 191892 Score = 28.9 bits (63), Expect = 7.4 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 11/139 (7%) Frame = +3 Query: 52 LPQNFTRAGTSNHSTVTDPDEIVRRQEAVTAARLRMQEELNAQAELYKQKQVQLQEEKRQ 111 +P +F R G + P Q A+ AQA ++ Q QVQ+Q++ R Sbjct: 185859 VPHDFYRGGGYSDGMYVAPPMQAHPQATPAQAQ--------AQAHVWHQPQVQVQQQARP 186014 Query: 112 RNIET-----------WDRMKEGKSSKVACRLGQEPSPSTSTSAATKPKQEKQERKTLRG 160 ++ W++ + S+ A L T AA ++ KT G Sbjct: 186015 LSVPVPVSGQTTFPCLWEKCGQVFMSQAA--LQSHSIVHTGAQAAL-----SEQAKTENG 186173 Query: 161 SGYNPLTGDGGGTCAWRPG 179 G +P TC W G Sbjct: 186174 EGSDPF------TCTWEQG 186212 >supercont1.26 of Sphaeroforma arctica JP610 Length = 227673 Score = 28.9 bits (63), Expect = 7.4 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = +2 Query: 121 KEGKSSKVACRLGQEPSPSTST---SAATKPKQEKQERKTLRGSGYNPLTGDG 170 K + R +P +T S +T+PK E+ ER + GYN T DG Sbjct: 63089 KRNAIENITARSTNKPRTTTGCGKGSTSTEPKGER*ERAPCKKCGYNLTTRDG 63247 >supercont1.10 of Sphaeroforma arctica JP610 Length = 269052 Score = 28.9 bits (63), Expect = 7.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 142 TSAATKPKQEKQERKTLRGSGYNPLTGDG 170 +S AT+PK E++ER + GYN DG Sbjct: 55440 SSTATEPKGERKERAPCKKCGYNLTKRDG 55354 >supercont1.48 of Sphaeroforma arctica JP610 Length = 190658 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Frame = -1 Query: 138 PSTST-----SAATKPKQEKQERKTLRGSGYNPLTGDG 170 P TST S +T+PK E++ER + GYN DG Sbjct: 173096 PRTSTGGSKSSISTEPKGERKERAPCKKCGYNLTKHDG 172983 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.312 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,043,962 Number of Sequences: 15618 Number of extensions: 407624 Number of successful extensions: 2257 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2256 length of query: 187 length of database: 40,529,447 effective HSP length: 103 effective length of query: 84 effective length of database: 38,920,793 effective search space: 3269346612 effective search space used: 3269346612 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 62 (28.5 bits)