TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|56972261|gb|AAH88768.1| selenoprotein S [Xenopus (Silurana) tropicalis] (187 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325182330|emb|FR824071.1| Albugo laibachii Nc14, genomic cont... 32 0.26 gi|325186866|emb|FR824167.1| Albugo laibachii Nc14, genomic cont... 31 0.45 gi|325192104|emb|FR824433.1| Albugo laibachii Nc14, genomic cont... 31 0.58 gi|325192436|emb|FR824469.1| Albugo laibachii Nc14, genomic cont... 31 0.58 gi|325190557|emb|FR824318.1| Albugo laibachii Nc14, genomic cont... 29 1.7 gi|325180604|emb|FR824053.1| Albugo laibachii Nc14, genomic cont... 28 2.9 gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic cont... 28 3.8 gi|325184670|emb|FR824110.1| Albugo laibachii Nc14, genomic cont... 28 4.9 gi|325183442|emb|FR824087.1| Albugo laibachii Nc14, genomic cont... 27 8.4 gi|325186838|emb|FR824166.1| Albugo laibachii Nc14, genomic cont... 27 8.4 gi|325190648|emb|FR824323.1| Albugo laibachii Nc14, genomic cont... 27 8.4 >gi|325182330|emb|FR824071.1| Albugo laibachii Nc14, genomic contig CONTIG_26_NC14_v4_158960_243 Length = 158960 Score = 32.0 bits (71), Expect = 0.26 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = +1 Query: 88 QEELNAQAELYKQKQVQLQEEK----RQRNIETWDRMKEGKSSKVACR--LGQEPSPSTS 141 QE+ + E KQ Q L E+K + ++ +K+GKSS L P S Sbjct: 109465 QEKRTSIKEELKQAQDLLHEKKANALKDASVNATSLVKKGKSSNTQSNKILSTSTYPKAS 109644 Query: 142 TSAATKPKQEKQERK 156 TS++ KPK ++ + Sbjct: 109645 TSSSRKPKSNAEDNR 109689 >gi|325186866|emb|FR824167.1| Albugo laibachii Nc14, genomic contig CONTIG_122_NC14_v4_71863_225 Length = 71863 Score = 31.2 bits (69), Expect = 0.45 Identities = 19/67 (28%), Positives = 37/67 (55%) Frame = -2 Query: 49 IQKLPQNFTRAGTSNHSTVTDPDEIVRRQEAVTAARLRMQEELNAQAELYKQKQVQLQEE 108 +QK+ + T T + S DE+VR QE + R++ E++ + E + K+++ + E Sbjct: 20391 LQKMEE--TAQQTLDESLKRMKDEVVRLQEEFDSHHERIKYEISFRKETEELKRIEFETE 20218 Query: 109 KRQRNIE 115 KR +I+ Sbjct: 20217 KRITDIQ 20197 >gi|325192104|emb|FR824433.1| Albugo laibachii Nc14, genomic contig CONTIG_390_NC14_v4_22242_153 Length = 22242 Score = 30.8 bits (68), Expect = 0.58 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 3/149 (2%) Frame = -2 Query: 24 QNTVGVVLSSYGWYILLGCILIYLLIQKLPQNFTRAGTSNHSTVTDPDEIVRRQEAVTAA 83 Q+TV +++ L IL+ + L +F + +HS +T+ V+ E VT+ Sbjct: 21860 QSTVSIIIVYAHKASLSKLILL*KPLSLLTPSFAKENR-HHSDMTEASNKVQTAEIVTSF 21684 Query: 84 RLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPSP---ST 140 Q ELN + + + QEE ++ ET + +E A LG P S Sbjct: 21683 ENDHQNELNTEIKASESDDGPPQEETQE---ETQEETQEETQEYSA--LGTPPDEAEISM 21519 Query: 141 STSAATKPKQEKQERKTLRGSGYNPLTGD 169 T +A K E ++R S GD Sbjct: 21518 GTISAPKSPVETTTSPSVRFSHVESRNGD 21432 >gi|325192436|emb|FR824469.1| Albugo laibachii Nc14, genomic contig CONTIG_426_NC14_v4_18773_118 Length = 18773 Score = 30.8 bits (68), Expect = 0.58 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 3/149 (2%) Frame = -2 Query: 24 QNTVGVVLSSYGWYILLGCILIYLLIQKLPQNFTRAGTSNHSTVTDPDEIVRRQEAVTAA 83 Q+TV +++ L IL+ + L +F + +HS +T+ V+ E VT+ Sbjct: 18391 QSTVSIIIVYAHKASLSKLILL*KPLSLLTPSFAKENR-HHSDMTEASNKVQTAEIVTSF 18215 Query: 84 RLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPSP---ST 140 Q ELN + + + QEE ++ ET + +E A LG P S Sbjct: 18214 ENDHQNELNTEIKASESDDGPPQEETQE---ETQEETQEETQEYSA--LGTPPDEAEISM 18050 Query: 141 STSAATKPKQEKQERKTLRGSGYNPLTGD 169 T +A K E ++R S GD Sbjct: 18049 GTISAPKSPVETTTSPSVRFSHVESRNGD 17963 >gi|325190557|emb|FR824318.1| Albugo laibachii Nc14, genomic contig CONTIG_273_NC14_v4_34877_220 Length = 34877 Score = 29.3 bits (64), Expect = 1.7 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 137 SPSTSTSAATKPKQEKQERKTLRGSGYNP 165 SP +++ AT P+QE ++R TLR S +P Sbjct: 30021 SPQSTSMTATPPEQETKKRLTLRYSSTHP 29935 >gi|325180604|emb|FR824053.1| Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 Length = 238846 Score = 28.5 bits (62), Expect = 2.9 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -1 Query: 88 QEELNA-QAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPSPSTSTSAAT 146 ++++NA L++ K ++E +RQ N TW++ K S + L + P P + Sbjct: 131662 EKQMNALPLPLFQTKMSLIEEWRRQSNRATWNKNKRQVSDCRSGMLMEAPCPLCCLNYFR 131483 Query: 147 KPKQEKQERKTLRGSGYNPLTG 168 +E+ ++ G + TG Sbjct: 131482 MKIEEQDRQRFTMGDAMHTGTG 131417 >gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic contig CONTIG_101_NC14_v4_78707_237 Length = 78707 Score = 28.1 bits (61), Expect = 3.8 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Frame = +1 Query: 71 DEIVRRQEAVTAARLRMQEEL--NAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKV 128 DE + +L + EE N + K+ + +EEK + E W++ KE K + Sbjct: 45070 DECGKDGNGDNGGKLELDEECGKNEGDDGDKKNGSKSKEEKEKEKEEKWNK-KEQKKKEK 45246 Query: 129 ACRLGQEPSPSTSTSAATKPKQEKQERKT 157 +L ++ + K K+E+++RK+ Sbjct: 45247 EEKLKKKKAAKKKKKEEAKKKEEERKRKS 45333 >gi|325184670|emb|FR824110.1| Albugo laibachii Nc14, genomic contig CONTIG_65_NC14_v4_99306_240 Length = 99306 Score = 27.7 bits (60), Expect = 4.9 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = +2 Query: 83 ARLRMQEELNAQAELYKQKQVQLQEEKRQRNIETWDRMKEGKSSKVACRLGQEPSPSTST 142 AR+ Q E A +L+ + Q +W+ + ++AC +G E ST T Sbjct: 91433 ARIHKQRESIAMTSFSDNVDTRLRSKSEQLG-PSWEEREPPSMVEIACEIGSEKKNSTQT 91609 >gi|325183442|emb|FR824087.1| Albugo laibachii Nc14, genomic contig CONTIG_42_NC14_v4_131770_225 Length = 131770 Score = 26.9 bits (58), Expect = 8.4 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 121 KEGKSSKVACRLGQEPSPSTSTSAATKPKQEKQERKTLRGSGYNPLTGDG 170 KEG S AC +G+ S + + + ++ E+K+ G+GY+ DG Sbjct: 82548 KEGWSQS*ACGVGRSAVFGESRTRSKQEDKDS*EKKSPAGAGYSRRL*DG 82399 >gi|325186838|emb|FR824166.1| Albugo laibachii Nc14, genomic contig CONTIG_121_NC14_v4_71970_233 Length = 71970 Score = 26.9 bits (58), Expect = 8.4 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 118 DRMKEGKSSKVACRLGQEPSPSTSTSAATKPKQEKQE 154 D E + K++ +G P+ S S +T PK++KQE Sbjct: 33222 DTNSENGAEKIS-NVGDSVKPNVSPSPSTTPKKQKQE 33329 >gi|325190648|emb|FR824323.1| Albugo laibachii Nc14, genomic contig CONTIG_278_NC14_v4_33870_340 Length = 33870 Score = 26.9 bits (58), Expect = 8.4 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +3 Query: 116 TWDRMKEGKSSKVACRLG-----QEPSPSTSTSAATKPKQEKQERKTLRGSGYNPLTGDG 170 T+D++K+G+ S G +E S + +A KP+ + + K R N + DG Sbjct: 14649 TFDKIKKGEGSTNGLPSGKLKGNEETSAPPAGNAEPKPEPQPEPEKEGRDDESNEKSADG 14828 Query: 171 G 171 G Sbjct: 14829 G 14831 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.312 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,528,172 Number of Sequences: 3816 Number of extensions: 81875 Number of successful extensions: 397 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 396 length of query: 187 length of database: 10,913,379 effective HSP length: 94 effective length of query: 93 effective length of database: 10,554,675 effective search space: 981584775 effective search space used: 981584775 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 57 (26.6 bits)