TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|315113844|ref|NP_001186679.1| selenoprotein S [Taeniopygia
guttata]
         (189 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic cont...    31   0.46 
gi|325191222|emb|FR824385.1| Albugo laibachii Nc14, genomic cont...    30   0.78 
gi|325191386|emb|FR824398.1| Albugo laibachii Nc14, genomic cont...    30   1.0  
gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont...    30   1.3  
gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic cont...    30   1.3  
gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic cont...    29   2.3  
gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont...    28   3.0  
gi|325185388|emb|FR824126.1| Albugo laibachii Nc14, genomic cont...    28   3.9  
gi|325192970|emb|FR824548.1| Albugo laibachii Nc14, genomic cont...    28   5.0  
gi|325187405|emb|FR824184.1| Albugo laibachii Nc14, genomic cont...    27   8.6  
gi|325188816|emb|FR824236.1| Albugo laibachii Nc14, genomic cont...    27   8.6  

>gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic contig
             CONTIG_36_NC14_v4_137019_239
          Length = 137019

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 16/44 (36%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query: 74    VVVRRQEALAAARLRMQEE-LNAQAEKYKEKQRQLEEERRRQKI 116
             +++ RQEA+ A + R+++E L  +    +E++++LEEERR ++I
Sbjct: 43538 LLLERQEAIRAQQERIEKERLEQERILREEEEKRLEEERRLEEI 43669


>gi|325191222|emb|FR824385.1| Albugo laibachii Nc14, genomic contig
            CONTIG_340_NC14_v4_26654_245
          Length = 26654

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 70   EEPDVVVRR-QEALAAARLRMQEELNAQAEKYKEKQRQLEEERRRQKIVMWESMQE 124
            EE +VVV + +E L     +++EEL  + E+  E    LEE      +V+WES +E
Sbjct: 8809 EESEVVVEKVREELEVVVEKVREELEVKEEELGE----LEEVVGEDSLVLWESREE 8964


>gi|325191386|emb|FR824398.1| Albugo laibachii Nc14, genomic contig
             CONTIG_353_NC14_v4_24749_244
          Length = 24749

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 27/97 (27%)
 Frame = +1

Query: 67    EAAEEPDVVVRRQEALAAARL-----------RMQE----------------ELNAQAEK 99
             EAAE  D+  +++  LAAA L           RMQ+                + NA  E 
Sbjct: 12019 EAAELDDIKEKQKRKLAAAELCVELSKQEIEKRMQKRAAREDMEKYAAETGNQHNAWKEA 12198

Query: 100   YKEKQRQLEEERRRQKIVMWESMQEGKSYKGNLKLNQ 136
              KEK+R+++ + +R+  +  E +Q+    +  L+  Q
Sbjct: 12199 EKEKEREMQRKLQREATLRQEELQDAMRQQKKLRERQ 12309


>gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig
             CONTIG_64_NC14_v4_99844_253
          Length = 99844

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 111   RRRQKIVMWESMQEGKS-YKGNLKLNQEVESAASSASAVPKSKPNKKPLRGGGYNPLSGE 169
             R R+++V  E+ ++    Y+ N  L + V  A   +S           + G GYNPL+ E
Sbjct: 74050 RARKRLVANEAAEDDADFYRFNYDLPRSVTPAVMKSSM----------MNGHGYNPLNRE 73901

Query: 170   GGGTCS 175
               G+CS
Sbjct: 73900 QRGSCS 73883


>gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic contig
             CONTIG_379_NC14_v4_22761_228
          Length = 22761

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 105   RQLEEERRRQKIVMWESMQEGKSYKGNLK 133
             R  E  R+RQ++V+W++ Q GKS +  L+
Sbjct: 19319 RLKELVRKRQQLVVWDAAQRGKSLRSRLE 19233


>gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic contig
             CONTIG_101_NC14_v4_78707_237
          Length = 78707

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = +2

Query: 106   QLEEERRRQKIVMWESMQEGKSYKGNLKLNQEV--------ESAASSASAVPKSKPNKKP 157
             + E+E   +K    E+ +E   + G  K  +E         +   ++  A PK+ P   P
Sbjct: 43199 ECEDEEEEEK----ENDEEQPGFGGGGKTKKETTTGGGGTTKEVTTAGDAAPKATPGTGP 43366

Query: 158   LRGGGYNPLSGEGGGTCSWRPGRRGP 183
               GGG    +G  GGT    P    P
Sbjct: 43367 SGGGGTPSGTGGTGGTPIGNPSSNLP 43444


>gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig
              CONTIG_2_NC14_v4_395950_240
          Length = 395950

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -3

Query: 78     RQEALAAARLRMQEELNAQAEKYKEKQRQLEEERRRQKI 116
              R EAL AARLR Q+ L    E  KEKQ + E++RR   I
Sbjct: 231206 RDEALLAARLRQQQSL---LEASKEKQDR-EKKRRSAAI 231102


>gi|325185388|emb|FR824126.1| Albugo laibachii Nc14, genomic contig
             CONTIG_81_NC14_v4_91342_214
          Length = 91342

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 111   RRRQKIVMWESMQEGKSYKGNL 132
             R+RQ++++W++ Q GKS +  L
Sbjct: 88862 RKRQRLLVWDAAQRGKSLRSRL 88927


>gi|325192970|emb|FR824548.1| Albugo laibachii Nc14, genomic contig
            CONTIG_513_NC14_v4_13099_246
          Length = 13099

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = -2

Query: 85   ARLRMQEELNAQAEKYKEKQRQLEEERRRQKIVMWESMQ-EGKSYKGNL 132
            A  R+QEE  A+A+++ ++  QLEEER+ +++ + +  Q E K+ +  L
Sbjct: 5208 AEKRLQEE--AEAKRHADELIQLEEERKLKELELAKQRQLEAKNRESEL 5068


>gi|325187405|emb|FR824184.1| Albugo laibachii Nc14, genomic contig
             CONTIG_139_NC14_v4_67358_243
          Length = 67358

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 90    QEELNAQAEKYKEKQRQLEEERRRQKIVMWESMQEGKSYKGNLKLNQE--VESAASSASA 147
             QEE     E   ++QRQ+E+  + ++    E  +  +  +  LKL QE  V  A  + S 
Sbjct: 29040 QEEKERNEEMEAQRQRQMEQREKEKQREREEFQRRKEQQEFALKLAQEERVREARHATSG 28861

Query: 148   VPKSKP 153
              P   P
Sbjct: 28860 RPTLLP 28843


>gi|325188816|emb|FR824236.1| Albugo laibachii Nc14, genomic contig
             CONTIG_191_NC14_v4_49504_260
          Length = 49504

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 66    AEAAEEPDVVVRRQEALAAARLRMQEELNAQAEKYKEKQRQLEEERRRQK 115
             AE   +   +   ++A   A  +  E + A  EK K  +RQLEEER++Q+
Sbjct: 17865 AELDAKYQTIRELRDAFKEANDKYYENVRAIREK-KRLERQLEEERQKQE 17719


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.310    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,525,415
Number of Sequences: 3816
Number of extensions: 62556
Number of successful extensions: 379
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of query: 189
length of database: 10,913,379
effective HSP length: 94
effective length of query: 95
effective length of database: 10,554,675
effective search space: 1002694125
effective search space used: 1002694125
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)