TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|255759927|ref|NP_001157585.1| selenoprotein S [Sus scrofa] (190 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.8 35 0.023 T.congo.pschr.9 33 0.067 T.congo.pschr2 33 0.11 T.congo.pschr.7 32 0.19 T.congo.pschr.11 32 0.25 T.congo.pschr4 31 0.33 TcIL3000_10_v2.embl 30 0.56 T.congo.pschr.6 28 2.1 T.congo.pschr.3. 28 3.7 T.congo.pschr.5 27 6.2 >T.congo.pschr.8 Length = 2451971 Score = 35.0 bits (79), Expect = 0.023 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Frame = +1 Query: 52 STRLRALRQRHLDGAAAALEP---DVVVKRQEALA------AARLKMQEELNAQVEKHKE 102 + R RA R + A AL+ + KR E +A AAR + +E ++ + +E Sbjct: 2047507 AARKRAENARRRESAREALKKRAEEAARKRAEEMARKRAERAARRQAEEAAAKKLAEEEE 2047686 Query: 103 KLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRKSD---KKPL 159 R EEE + + R+ ARKR EE++ ++K++ ++ Sbjct: 2047687 ARRVAEEE-----------IAQKRAEEEAARKRLEEEAARKKAEEEAARKKAEGGGEEES 2047833 Query: 160 RGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 RGG GG R G R S G G Sbjct: 2047834 RGGSSKKEG*TGGSEEEGRAGGREEESRGSG 2047926 Score = 32.3 bits (72), Expect = 0.15 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Frame = +1 Query: 57 ALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKI 116 A R+ + A + KR E AAR K +E L + E+ + R EE KRR + Sbjct: 2047225 ARRRSRMQAARMRARKAAMRKRMEE--AARKKAEEALKREAEQEAAQKRAREEAKRRAEE 2047398 Query: 117 E----RWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRKSD 155 E R + E + + +A+++ EE++ +++++ Sbjct: 2047399 EAARKRAEEEAEQKRAQEEAQRQAEEEATRKQAEEEAARKRAE 2047527 Score = 32.3 bits (72), Expect = 0.15 Identities = 20/84 (23%), Positives = 44/84 (52%) Frame = +1 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQ 136 +RQ AAA+ +EE +V + + ++ EEE R+++E + ++ + ARK+ Sbjct: 2064715 RRQAEEAAAKKLAEEEEARRVAEEEIAQKRAEEEAARKRLE--EEAARKKAEQEAARKKA 2064888 Query: 137 EEDSPGPSTSSVIPKRKSDKKPLR 160 EE++ ++K++++ R Sbjct: 2064889 EEEAARKRAEQEAARKKAEEEAAR 2064960 Score = 32.0 bits (71), Expect = 0.19 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Frame = +1 Query: 66 AAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE----RWDS 121 A E ++ KR E AAR +++EE + + + ++ EEE R++ E R + Sbjct: 2064766 ARRVAEEEIAQKRAEE-EAARKRLEEEAARKKAEQEAARKKAEEEAARKRAEQEAARKKA 2064942 Query: 122 VQEGRSYRGD---ARKRQEEDSPGPSTSSVIPKRKSDKKPLR 160 +E R + ARK+ EE++ ++K++++ R Sbjct: 2064943 EEEAARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAAR 2065068 Score = 31.6 bits (70), Expect = 0.25 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Frame = +1 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR--QKIERWDSVQEG-RSYRGDAR 133 KR E AAR K +E L + E+ + R EE KRR ++ E+ + +E R +A Sbjct: 2064391 KRMEE--AARKKAEEALKREAEQEAAQKRAREEAKRRAEEEAEQKRAQEEAQRQAEEEAT 2064564 Query: 134 KRQEEDSPGPSTSSVIPKRKSDKKPLR 160 ++Q E+ + +R+S ++ L+ Sbjct: 2064565 RKQAEEEAARKRAENARRRESAREALK 2064645 Score = 31.6 bits (70), Expect = 0.25 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Frame = +1 Query: 57 ALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKI 116 A ++ + A LE + K+ E AAR K +EE + + + ++ EEE R++ Sbjct: 2064793 AQKRAEEEAARKRLEEEAARKKAEQ-EAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2064969 Query: 117 E----RWDSVQEGRSYRGD---ARKRQEEDSPGPSTSSVIPKRKSDKKPLR 160 E R + +E R + ARK+ EE++ ++K++++ R Sbjct: 2064970 EQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAAR 2065122 Score = 30.0 bits (66), Expect = 0.74 Identities = 22/83 (26%), Positives = 39/83 (46%) Frame = +1 Query: 57 ALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKI 116 A R+R AA + +++ AAR K +EE + + + ++ EEE R++ Sbjct: 2064898 AARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2065077 Query: 117 ERWDSVQEGRSYRGDARKRQEED 139 E+ ++ ARKR EE+ Sbjct: 2065078 EQ--EAARKKAEEEAARKRAEEE 2065140 Score = 29.6 bits (65), Expect = 0.96 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Frame = +1 Query: 66 AAAALEPDVVVKRQEALAAARLKMQEEL---NAQVEKHKEKLRQLEEEKRRQKIERWDSV 122 A E ++ KR E AAR +++EE A+ E ++K EE+ R + + Sbjct: 2047687 ARRVAEEEIAQKRAEE-EAARKRLEEEAARKKAEEEAARKKAEGGGEEESRGGSSKKEG* 2047863 Query: 123 QEGRSYRGDARKRQEE-----DSPGPSTSSVIPKRKSDKKPLRGGGYNPLSGEGGGACSW 177 G G A R+EE + + + S ++ RGG GG Sbjct: 2047864 TGGSEEEGRAGGREEESRGSGEEESRGSGEEESRAGSGEEESRGGSSKKEG*TGGSEEEG 2048043 Query: 178 RPGRRGPSSGGXG 190 R G R S G G Sbjct: 2048044 RAGGREEESRGSG 2048082 Score = 29.6 bits (65), Expect = 0.96 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Frame = +1 Query: 52 STRLRALRQRHLDGAAAALEP---DVVVKRQEALA------AARLKMQEELNAQVEKHKE 102 + R RA R + A AL+ + KR E +A AAR + +E ++ + +E Sbjct: 2064586 AARKRAENARRRESAREALKKRAEEAARKRAEEMARKRAERAARRQAEEAAAKKLAEEEE 2064765 Query: 103 KLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRKSDKKPLR 160 R EEE + + R+ ARKR EE++ ++K++++ R Sbjct: 2064766 ARRVAEEE-----------IAQKRAEEEAARKRLEEEAARKKAEQEAARKKAEEEAAR 2064906 Score = 29.6 bits (65), Expect = 0.96 Identities = 22/101 (21%), Positives = 47/101 (46%) Frame = +1 Query: 57 ALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKI 116 A ++ + A E + KR E AAR K +EE + + + ++ EEE R++ Sbjct: 2064847 ARKKAEQEAARKKAEEEAARKRAEQ-EAARKKAEEEAARKRAEQEAARKKAEEEAARKRA 2065023 Query: 117 ERWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRKSDKK 157 E+ ++ ARKR E+++ +++++++ Sbjct: 2065024 EQ--EAARKKAEEEAARKRAEQEAARKKAEEEAARKRAEEE 2065140 Score = 29.3 bits (64), Expect = 1.3 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = -2 Query: 77 KRQEALAAARLKMQEELNAQVEKHK----EKLRQLEEEKRRQKIERWDSVQEGRSYRGDA 132 +R+E AA + E Q+E+ K ++ RQ EEE R ++++ R + A Sbjct: 1269982 ERKEREAAILHDLSEAREKQIEERKRLKADERRQEEEEMERIAAVHKVALEQERQRKMRA 1269803 Query: 133 RKRQEEDS 140 RK+ EE+S Sbjct: 1269802 RKQHEENS 1269779 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +1 Query: 151 KRKSDKKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG 188 KR SDK + GG +NP SW P RG SSGG Sbjct: 1363108 KRTSDKSNVEGGPWNP-------HISWVP--RGNSSGG 1363194 >T.congo.pschr.9 Length = 2092392 Score = 33.5 bits (75), Expect = 0.067 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Frame = -1 Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDA 132 ++++++Q+ A ++QEE Q E+ + KLR+ EEE+ RQ+ R +E + A Sbjct: 1315104 ELLLQQQQREAEEERRLQEE-KLQQEEEERKLREEEEERARQREARRKRREEELAAEEAA 1314928 Query: 133 RKRQEE--DSPGPSTSSVIPKRKSDKKPLR 160 ++E + KRK +K+ LR Sbjct: 1314927 ALAEQEAAEEAAALAREEERKRKEEKRRLR 1314838 Score = 33.1 bits (74), Expect = 0.087 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 91 EELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDAR 133 EE+N Q ++ E+ RQL+ E +ER + + + + RGDAR Sbjct: 368756 EEMNTQQKEIAERRRQLDMELYEGNVERIEEILQLKDNRGDAR 368884 >T.congo.pschr2 Length = 799489 Score = 32.7 bits (73), Expect = 0.11 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = -3 Query: 87 LKMQEELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEED 139 LK E NA EK ++R+LEE+ ++Q + + Q+G+ D +R EED Sbjct: 491078 LKTLERSNASFEK---RIRELEEDTKKQMMYKTIVAQKGQKSVDDNIRRNEED 490929 >T.congo.pschr.7 Length = 2148087 Score = 32.0 bits (71), Expect = 0.19 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Frame = -2 Query: 101 KEKLRQLEEEKRRQK------IERWDSVQEGRSYRGDARKRQEEDSPGPSTS 146 K + R L E++R+K ++RW V R + D +EED PS S Sbjct: 625154 KSRERNLGRERKRKKKNNLNKLKRWSVVSSARQHTQDRHLEREEDIAAPSVS 624999 Score = 31.6 bits (70), Expect = 0.25 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%) Frame = -2 Query: 38 VFCCILLYVVFQKLSTRLRALRQRHLDGAAAALEPDVVVK---RQEALAAARLKMQEE-- 92 VF C V+ K + +R+RHL GA P + V+ RQ+A + + L+ Q E Sbjct: 1140239 VFVCPQCGEVYGKSESLQSHMRKRHLKGA-----PVIQVEQQPRQQAPSESLLQQQSEKW 1140075 Query: 93 ---LNAQVEKHKEKLRQLEEEKRRQKIERWDSVQ 123 + ++ + +EKLR +E+ R++ +R D +Q Sbjct: 1140074 KSDYDVKMNEMQEKLRSIEQLLERER-DRNDRLQ 1139976 Score = 29.3 bits (64), Expect = 1.3 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -1 Query: 115 KIERWDSVQEGRSYRGDARKRQEEDSPGPSTSS 147 ++ R +S+ R+YRGD R+ + E S P+ S+ Sbjct: 1695630 EVTREESMPASRNYRGDTRENRTEHSRSPTQST 1695532 Score = 27.3 bits (59), Expect = 4.8 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -3 Query: 54 RLRALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEK 103 RL +RQR+L G AAL VV L A+ K+ + +A V + + K Sbjct: 427870 RLTEVRQRYLLGVGAALLRGRVVIVARRLCHAKRKLGQAFHAIVPREENK 427721 >T.congo.pschr.11 Length = 4797796 Score = 31.6 bits (70), Expect = 0.25 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 75 VVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKR 112 V + +E + A R + EE+N ++KEKL+Q E E R Sbjct: 3841674 VERLEEHVVAVRTTLTEEMNVLTIEYKEKLKQKETENR 3841561 Score = 30.4 bits (67), Expect = 0.56 Identities = 23/67 (34%), Positives = 31/67 (46%) Frame = +1 Query: 72 PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGD 131 P + +R EA+ A L+ EE +E+LRQLE R+ E W + E Sbjct: 2952313 PALDAERMEAVRQAELRKHEE-------EQERLRQLELAARQALEEEWRNAIESH----- 2952456 Query: 132 ARKRQEE 138 RKRQ E Sbjct: 2952457 -RKRQME 2952474 Score = 29.6 bits (65), Expect = 0.96 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -1 Query: 140 SPGPSTSSVIPKRKSDKKPLRGGGYNPLSGEGGGACSWRPGRRGPSS 186 SP P+ S P+R + P+ + +G +C+WR PSS Sbjct: 2191033 SPAPTWESCRPRRTKEPHPV*SQKHGSHNGGTTPSCNWRTSPTAPSS 2190893 Score = 29.3 bits (64), Expect = 1.3 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -1 Query: 60 QRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIERW 119 ++ D A D V+R E L +LN +VEK EEEKRR ++W Sbjct: 4482517 EQDFDPVALRERRDGAVRRVEQL------YNRKLNERVEKR-------EEEKRRMTEQQW 4482377 Query: 120 DSVQEGRSYRGDARKRQEEDS 140 D V + + R ++E++S Sbjct: 4482376 D-VDRAQRRLIEGRMKEEKES 4482317 Score = 29.3 bits (64), Expect = 1.3 Identities = 17/67 (25%), Positives = 35/67 (52%) Frame = +1 Query: 48 FQKLSTRLRALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQL 107 + + ++ + ++ +L A LE V ++ A + + + LN +VEKH+E +R L Sbjct: 2952832 YDDMESQFKTAKETYLANADERLE----VVDPQSTDAESVLLLKVLNEEVEKHRETVRLL 2952999 Query: 108 EEEKRRQ 114 + E R+ Sbjct: 2953000 QAELERK 2953020 Score = 28.5 bits (62), Expect = 2.1 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 2/112 (1%) Frame = +2 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQ 136 KR+ A A R + E A+V H+E + QK+ D Q+ G R Sbjct: 950885 KRKVAEAVERQREDGEKEAKVSNHQEADGAPRRQVEAQKVVPEDRTQQSEDKVGGKRLEA 951064 Query: 137 EEDSPGPSTSSVIPKRKSDKKPLRGGGYNPLSGEGGGACSW--RPGRRGPSS 186 + + P+ + P G SG +C++ R RR P++ Sbjct: 951065 SQQRRSSGHPVLTPRALN---PKTSGSATSGSGTQSNSCTYATRKSRRIPTA 951211 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +1 Query: 98 EKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRKSDKK 157 EK K KL++++E +R + + + + R+ + + PG S S + RK DKK Sbjct: 4619836 EKRKTKLKEMKEWERNR-------LSDYPH*CSNRRESENAEKPGRSEESYLYDRKKDKK 4619994 Query: 158 PLRGGGYN 165 +N Sbjct: 4619995 KCHLNAWN 4620018 Score = 26.9 bits (58), Expect = 6.2 Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = +2 Query: 79 QEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRR-QKIERW 119 +E +AAAR++ N +K++ ++++EEE+ +++ +W Sbjct: 365882 EEKMAAARVRRYAPTNFDWKKYEAAVKRVEEERHMVERMSKW 366007 Score = 26.9 bits (58), Expect = 6.2 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 86 RLKMQEELNAQVEKHKEKLRQLEEEKR 112 RLK +EE ++E+ K++L +EEE R Sbjct: 4414502 RLKKEEERRLRLEEEKKQLLLMEEEHR 4414422 Score = 26.6 bits (57), Expect = 8.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 161 GGGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 G G + +G GGG W G SGG G Sbjct: 826637 GEGPSHATGRGGGRAGWPSGNGERPSGGGG 826726 Score = 26.6 bits (57), Expect = 8.1 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 10/63 (15%) Frame = +2 Query: 77 KRQEAL-----AAARLKMQEELNAQVEKH-----KEKLRQLEEEKRRQKIERWDSVQEGR 126 KR+E L AAARLK+Q++ A E E+L++ EE Q+ R +++ R Sbjct: 2837738 KREEELLMHQNAAARLKIQQQRCAAAEAEYQKQLHERLKRAEERSAHQQAARELLLEQRR 2837917 Query: 127 SYR 129 R Sbjct: 2837918 IQR 2837926 >T.congo.pschr4 Length = 1343510 Score = 31.2 bits (69), Expect = 0.33 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = +3 Query: 129 RGDARKRQEEDSPGPSTSSVIPKRKSDKKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG 188 +GDA + + ST S+ RGGGY+ G G CS P R G +S G Sbjct: 524373 KGDAATQLSRRTTDKSTRSI---------KCRGGGYDCWVGHHGAFCSEAPTRTGGASAG 524525 Score = 29.3 bits (64), Expect = 1.3 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%) Frame = -1 Query: 84 AARLKMQEELNAQ-VEKHKEK--------LRQLEEEKRRQKIERWDSVQEGRSYRGDARK 134 A RLK ++E+ + +++ KEK L + EEKRR++ E +E R RK Sbjct: 3176 AQRLKEEQEIRERDLKRQKEKEERERRAALEREAEEKRRREAEERQIEEEKR------RK 3015 Query: 135 RQEED 139 RQEE+ Sbjct: 3014 RQEEE 3000 Score = 27.3 bits (59), Expect = 4.8 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +1 Query: 36 YIVFCCILLYVVFQKLSTRLRALRQRHLDGAAAALEPDVVVKRQEA 81 +++ C +L ++F++ L L Q HLDG P ++ R EA Sbjct: 108994 WLIACQVLFNMIFRQRKY-LIVLAQNHLDGEVTHALPGIIGLRNEA 109128 >TcIL3000_10_v2.embl Length = 3612457 Score = 30.4 bits (67), Expect = 0.56 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = +2 Query: 49 QKLSTRLRALRQR-HLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQL 107 Q LS+ LRQ L E + ++K+ + A LK++ + ++ E+ R L Sbjct: 2456633 QSLSSAAIQLRQEIELTREKHRREEEGLMKKMDEALATLLKIERAMKNLADRGTEEAR-L 2456809 Query: 108 EEEKRR-QKIERWDSVQEGRSYRGDARKRQEE 138 EEEKRR +K R + ++ + +AR E Sbjct: 2456810 EEEKRRVEKERREEEIKRVKREEAEARAHAME 2456905 Score = 27.7 bits (60), Expect = 3.7 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 3/37 (8%) Frame = -3 Query: 85 ARLKMQEELNAQVEKHKEK-LRQL--EEEKRRQKIER 118 ARL+ +EEL Q E+H+E+ LRQL E+E+ R K+ R Sbjct: 3227072 ARLR-EEELQRQEEQHQEETLRQLTAEQEETRLKVFR 3226965 Score = 27.3 bits (59), Expect = 4.8 Identities = 11/29 (37%), Positives = 12/29 (41%) Frame = -3 Query: 162 GGYNPLSGEGGGACSWRPGRRGPSSGGXG 190 GG+ G GGG W G GG G Sbjct: 2325566 GGWGSGGGRGGGGSGWGSGGNSRGGGGRG 2325480 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +1 Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIE 117 D +++++ L R + EL EKH+E+ +++EEE R + E Sbjct: 613366 DKLMEKENELEEERHRHSAELLLLHEKHEEERQRVEEEIRSLRAE 613500 Score = 26.9 bits (58), Expect = 6.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -3 Query: 38 VFCCILLYVVFQKLSTRLRALRQRHLDGAAAALEP 72 + CC+ Y+ Q L A R+R L G +EP Sbjct: 2649302 IVCCVEGYIEVQSLEYL*HATRERKLPGIEKVIEP 2649198 Score = 26.6 bits (57), Expect = 8.1 Identities = 27/96 (28%), Positives = 42/96 (43%) Frame = -1 Query: 44 LYVVFQKLSTRLRALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEK 103 +Y V +LS RA ++R G + K QE L K E+ +KH+EK Sbjct: 2431951 IYEVKNELS---RAQKEREQCGVELYNSQQHLAKLQETLE----KCHEKHLVTKQKHEEK 2431793 Query: 104 LRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEED 139 L++ EE + R + + R Y +RQ+ D Sbjct: 2431792 LQEREELSAQADTLRKNIEDQQRQY-----ERQQAD 2431700 >T.congo.pschr.6 Length = 1233507 Score = 28.5 bits (62), Expect = 2.1 Identities = 26/92 (28%), Positives = 44/92 (47%) Frame = -1 Query: 45 YVVFQKLSTRLRALRQRHLDGAAAALEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKL 104 +V+ L+T RA++ L+ + DV +Q A +QEE NA KL Sbjct: 227250 FVLQHDLNTVRRAVKA--LESELRTIGTDVAQHQQVA------HLQEESNA-------KL 227116 Query: 105 RQLEEEKRRQKIERWDSVQEGRSYRGDARKRQ 136 R+LEE+ RR ++ + + R + + R+ Q Sbjct: 227115 RRLEEDHRRHQLSINEIKESLRGFHEELRETQ 227020 >T.congo.pschr.3. Length = 1451265 Score = 27.7 bits (60), Expect = 3.7 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Frame = -3 Query: 105 RQLEEEKRRQKIER----WDSVQEGRSYRGDARKR--QEEDSPGPSTSSVIPKRKS---D 155 R LE + R+++ W +E R +KR + +++ GP ++ + + Sbjct: 340909 RTLEGKGVRRRLREMKAAWYKEKEDREAERILKKRAARGKNNGGPGQMLLLGSQAAAVNP 340730 Query: 156 KKPLRGGGYNPLSGEGGGACSWRPGRRGPS 185 P GGG P G G G G +GPS Sbjct: 340729 SPPAAGGGPGPSVGGGSGHSGIEAGAKGPS 340640 Score = 26.9 bits (58), Expect = 6.2 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = -3 Query: 21 FLHVTVGSLLATYGWYIVFC-CILLYVVFQKLSTRLRALRQRHLDGAAAALEPDVVVKR- 78 F HV G+L + G Y+V+ C+L V + RALR G+ + P V +R Sbjct: 358612 FCHVAAGALGSKTGNYVVYIFCLLRCVAWACAFLVYRALR-----GSRSRHPPSVEARRF 358448 Query: 79 ---QEALAAARL 87 Q+ L AR+ Sbjct: 358447 L*GQKVLGCARM 358412 Score = 26.6 bits (57), Expect = 8.1 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = +1 Query: 94 NAQVEKHKEKLRQLEEEKRRQKIERWDSVQEGRSYRGDARKRQEEDSPGPSTSSVIPKRK 153 +A +E+H+ KLR + E R++++ + RG+A +++ S G + Sbjct: 110392 DALLEEHETKLRVMRERLRKEEL---------NALRGEASRKRGSRSEGDA--------- 110517 Query: 154 SDKKPLRGGGYNPLSGEGGGACSWRPGRRG 183 K + G++ SG G R GR G Sbjct: 110518 GGYKGAQANGHDGSSGSGND----RNGRAG 110595 Score = 26.6 bits (57), Expect = 8.1 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Frame = -2 Query: 42 ILLYVVFQKLSTRLRALRQRHLDGAAAALEPDVVVKRQEALAAA-RLKMQEELNAQVEKH 100 +LL ++F L+ R+ H D L + VVK+ + R K + EK Sbjct: 864755 LLLLLLFHILAPCSRS----HTDTQQHGLASERVVKQIPMQSFTNRKKRTTAWGKKYEKQ 864588 Query: 101 KEKLRQLEEEKRRQKIERWDSVQEGRSYRGDAR------KRQEEDSPGPSTSSVIPK-RK 153 K+K ++ E+E R+Q+ +R + +E + +G R R + G + + IP RK Sbjct: 864587 KKKEKRKEKE-RKQEQKRKEGWRESKKQKGKRRHHSTIHSRMNKKKKGRAQVATIPI*RK 864411 Query: 154 SDKK 157 + K Sbjct: 864410 RENK 864399 >T.congo.pschr.5 Length = 1517473 Score = 26.9 bits (58), Expect = 6.2 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 51 LSTRLRALRQRHLDGAAAALEPDVVVKRQEALA-AARLKMQEELNAQVEKHKEKLRQLEE 109 ++ R RQR + A AL KR+EA A AA LK Q+E E+L+Q EE Sbjct: 1305239 VAARYAEERQRENELAREAL----CQKRREATARAAALKRQQE---------EELQQAEE 1305099 Query: 110 EKRRQ 114 E +R+ Sbjct: 1305098 ETKRR 1305084 Score = 26.6 bits (57), Expect = 8.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 161 GGGYNPLSGEGGGACSWRPGRR 182 GGG +G GG+C W+PG R Sbjct: 1058694 GGGVG--AGRFGGSCCWQPGPR 1058635 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.315 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,063,919 Number of Sequences: 11 Number of extensions: 75271 Number of successful extensions: 791 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 334 Number of HSP's gapped (non-prelim): 713 length of query: 190 length of database: 7,429,315 effective HSP length: 92 effective length of query: 98 effective length of database: 7,428,303 effective search space: 727973694 effective search space used: 727973694 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (26.2 bits)