TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|350646170|emb|CCD59154.1| Selenoprotein S [Schistosoma
mansoni]
         (125 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.784 of Sphaeroforma arctica JP610                           29   2.0  
supercont1.885 of Sphaeroforma arctica JP610                           29   2.6  
supercont1.418 of Sphaeroforma arctica JP610                           28   3.5  
supercont1.2 of Sphaeroforma arctica JP610                             28   4.5  
supercont1.1205 of Sphaeroforma arctica JP610                          28   5.9  
supercont1.217 of Sphaeroforma arctica JP610                           27   7.7  

>supercont1.784 of Sphaeroforma arctica JP610
          Length = 43128

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 71    HKSRNQDE-GEGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPT 117
             ++  N+DE G+ K+ +RK  D+D K K+  T + + +  +  KTY PT
Sbjct: 28599 YEIENKDELGDRKTKIRK*QDNDNKYKQ*LTVNCSIIEYNHDKTYIPT 28742


>supercont1.885 of Sphaeroforma arctica JP610
          Length = 33900

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 40    NSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFR 99
             NS   N+E+     +   A   A   +E T H+S     G+G SN RKS+ +   K++  
Sbjct: 25333 NSPEPNSENSHNPFQGNDALNVARKTSEETTHRS--DTNGDGSSNSRKSSKASYSKRKQA 25506

Query: 100   T 100
             T
Sbjct: 25507 T 25509


>supercont1.418 of Sphaeroforma arctica JP610
          Length = 75699

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 80    EGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTSR 119
             EG     KST++  K++  RT     L GDTG  Y  T R
Sbjct: 24976 EGSFGSAKSTETIHKRRYARTITSQALGGDTGGRYGSTIR 24857


>supercont1.2 of Sphaeroforma arctica JP610
          Length = 348075

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 70     QHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTSR 119
              Q K +  D     +  R+S  S  ++    T DYN L  + G   RP+ R
Sbjct: 317251 QSKDKYTDSSSDDAVRRQSRQSRRRQSSIYTVDYNDLPDEQGNRTRPSRR 317102


>supercont1.1205 of Sphaeroforma arctica JP610
          Length = 19738

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 33    FFRSWCENSSTVNNESHRLAMEAARAKFQAEFN 65
             FFRS  E  +  N+  HR + +   AKF+AE N
Sbjct: 14409 FFRSAAEEMTVSNSRDHRFS-DNPMAKFEAEIN 14314


>supercont1.217 of Sphaeroforma arctica JP610
          Length = 112121

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 22    FIIALSYFLWKFFRSWCENSSTVN 45
             F+IAL   L+  F SW  N S++N
Sbjct: 90865 FVIALGKSLYNIFESWFTNKSSLN 90936


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.315    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,411,392
Number of Sequences: 15618
Number of extensions: 167303
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of query: 125
length of database: 40,529,447
effective HSP length: 95
effective length of query: 30
effective length of database: 39,045,737
effective search space: 1171372110
effective search space used: 1171372110
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)