TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|350646170|emb|CCD59154.1| Selenoprotein S [Schistosoma mansoni] (125 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig5416 | | 1 to 8987 31 0.22 Lt_contig7172 | | 1 to 3660 29 0.85 Lt_contig7183 | | 1 to 9499 28 1.1 Lt_contig384 | | 1 to 3546 28 1.4 Lt_contig1322 | | 1 to 8123 27 3.2 Lt_contig4403 | | 1 to 5953 27 3.2 Lt_contig4559 | | 1 to 1441 27 4.2 Lt_contig1461 | | 1 to 3010 27 4.2 Lt_contig6634 | | 1 to 7462 27 4.2 Lt_contig6374 | | 1 to 9586 27 4.2 Lt_contig552 | | 1 to 15633 27 4.2 Lt_contig5242 | | 1 to 11885 26 5.5 Lt_contig1359 | | 1 to 12144 26 5.5 Lt_contig6967 | | 1 to 5662 26 5.5 Lt_contig5695 | | 1 to 8173 26 7.2 Lt_contig4962 | | 1 to 5100 26 7.2 Lt_contig7238 | | 1 to 18302 26 7.2 Lt_contig7203 | | 1 to 10517 26 7.2 Lt_contig3854 | | 1 to 2829 26 7.2 Lt_contig3848 | | 1 to 3544 26 7.2 Lt_contig6857 | | 1 to 18254 26 7.2 Lt_contig6835 | | 1 to 12876 26 7.2 Lt_contig1989 | | 1 to 1230 25 9.4 Lt_contig4235 | | 1 to 11600 25 9.4 Lt_contig1003 | | 1 to 11733 25 9.4 Lt_contig590 | | 1 to 5130 25 9.4 Lt_contig162 | | 1 to 2446 25 9.4 Lt_contig23 | | 1 to 6125 25 9.4 >Lt_contig5416 | | 1 to 8987 Length = 8987 Score = 30.8 bits (68), Expect = 0.22 Identities = 18/65 (27%), Positives = 27/65 (41%) Frame = -2 Query: 61 QAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTSRF 120 Q + V +H + G N RK T+ + +KKR R + + + GKT R Sbjct: 6643 QENDSTSVDKHNTEASQRGYQVCNARKHTEKETRKKRKRKLEKHDKVRGRGKTRRANVHE 6464 Query: 121 CSTGG 125 T G Sbjct: 6463 AGTRG 6449 >Lt_contig7172 | | 1 to 3660 Length = 3660 Score = 28.9 bits (63), Expect = 0.85 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 29 FLWKFFRSWCENSSTVNNESHRLAMEA-ARAKFQAEFNAEVTQH 71 FLW F + CE+ + HRLA+EA R K + E + H Sbjct: 1866 FLWAFLLAACEDGAQHVTAVHRLALEAFQRLKCETEGGVRLGLH 1735 >Lt_contig7183 | | 1 to 9499 Length = 9499 Score = 28.5 bits (62), Expect = 1.1 Identities = 21/91 (23%), Positives = 42/91 (46%) Frame = -1 Query: 16 YGLVTLFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRN 75 YG+ +L + L +FL F R+ + ++ ++SH AA A + A + + ++N Sbjct: 9433 YGVSSLILFLLVFFLSLFLRTVMQATNRYTSKSH----AAAAAGGSEDVAAGLGRDDAQN 9266 Query: 76 QDEGEGKSNVRKSTDSDEKKKRFRTSDYNPL 106 +VR S D+ + +T+ + L Sbjct: 9265 TTAASSDWSVRPSDDTATESTSVQTNSLSRL 9173 >Lt_contig384 | | 1 to 3546 Length = 3546 Score = 28.1 bits (61), Expect = 1.4 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = -2 Query: 38 CENSST-----VNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVR 86 C N++T V + R A K Q E VTQ+ +N+DE E + + R Sbjct: 2450 CTNTTTELKIPVRRQRARTQQNAVELKRQQERRRAVTQNNGKNEDEWEREESRR 2289 >Lt_contig1322 | | 1 to 8123 Length = 8123 Score = 26.9 bits (58), Expect = 3.2 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 12/98 (12%) Frame = -3 Query: 31 WKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVR---- 86 W+ S + + +HR E R Q E + K R + NVR Sbjct: 1185 WEIICSASRKDTHTHTHTHR---ERERETKQLASTKE*GRKKKRRPTHVHARKNVRNNTS 1015 Query: 87 --------KSTDSDEKKKRFRTSDYNPLMGDTGKTYRP 116 KS+D EKKKR R+ + D GK RP Sbjct: 1014 ASPWRYMRKSSDLHEKKKRKRSIS----VKDKGKLERP 913 >Lt_contig4403 | | 1 to 5953 Length = 5953 Score = 26.9 bits (58), Expect = 3.2 Identities = 24/100 (24%), Positives = 39/100 (39%) Frame = +1 Query: 3 FPAPEVSPQTNFNYGLVTLFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQA 62 FP P P+ F+YG + S + + R WC +++ H + R Q Sbjct: 2887 FPLPVPWPRVRFSYG------VEGSSRVGRAVRGWCR---LLSSFCHGFSETRGR---QL 3030 Query: 63 EFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSD 102 + N K + + EGEG + DS + +R D Sbjct: 3031 QLN-----EKEKRKGEGEGGGECMREKDSGWTLRLWRVQD 3135 >Lt_contig4559 | | 1 to 1441 Length = 1441 Score = 26.6 bits (57), Expect = 4.2 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Frame = -3 Query: 44 VNNESHRLAMEAARA-KFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSD 102 V+ S RLA+ R K+ E V ++ EG+ R+ D E K++ R D Sbjct: 1412 VSTCSARLAVRLIRVFKYTTETVMSVYVNRCAGGQAQEGRERGREGHDGREPKRKKRLGD 1233 Query: 103 YNPLMGDTGKTYRPTSRFCS 122 G+T P C+ Sbjct: 1232 RPHAA*RPGRTVAPLGHGCT 1173 >Lt_contig1461 | | 1 to 3010 Length = 3010 Score = 26.6 bits (57), Expect = 4.2 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +3 Query: 71 HKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYN 104 H + + +EGEGK+ R S ++KKR + + N Sbjct: 2718 HPALSVNEGEGKAERRASRGGKKEKKRSQNRERN 2819 >Lt_contig6634 | | 1 to 7462 Length = 7462 Score = 26.6 bits (57), Expect = 4.2 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = +3 Query: 6 PEVSPQTNFNYGLVTLFIIALSYFLWKFFRSWC 38 P + P T F + L + L YFL + WC Sbjct: 3339 PFLHPNTVFRFSLSLCVCVCLRYFLGACVKVWC 3437 >Lt_contig6374 | | 1 to 9586 Length = 9586 Score = 26.6 bits (57), Expect = 4.2 Identities = 18/76 (23%), Positives = 35/76 (46%) Frame = +2 Query: 21 LFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGE 80 + I+ L F F + C S V + R + A A+++A + T+H +D E Sbjct: 461 MLIVVLCVFASNSFLAAC---SRVLAKEQRRVEDEAEAEWRAAVSDPETRHARLAKDSQE 631 Query: 81 GKSNVRKSTDSDEKKK 96 ++ ++DE++K Sbjct: 632 RAEKLKLWQENDERRK 679 >Lt_contig552 | | 1 to 15633 Length = 15633 Score = 26.6 bits (57), Expect = 4.2 Identities = 24/109 (22%), Positives = 43/109 (39%) Frame = -3 Query: 5 APEVSPQTNFNYGLVTLFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEF 64 +P VSP + + G V F ++ Y LW R E + + +H Sbjct: 13906 SPAVSPPSKTHCGTVIYFSVSHPYRLW---RKNLETQYSTHTHTH--------------- 13781 Query: 65 NAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKT 113 + +H+ R G G+ R T +++KK + + L +T +T Sbjct: 13780 -THMYRHRDREGKGGAGRE--RGGTPLEQEKKEGTNTRTDRLTSNTKQT 13643 >Lt_contig5242 | | 1 to 11885 Length = 11885 Score = 26.2 bits (56), Expect = 5.5 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 72 KSRNQDEGEGKSNVRKSTDSDEKKKR 97 + R ++EGEG +V SDE++K+ Sbjct: 4753 RDREREEGEGGCSVTNQLQSDEQEKK 4830 >Lt_contig1359 | | 1 to 12144 Length = 12144 Score = 26.2 bits (56), Expect = 5.5 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 84 NVRKSTDSDEKKKRFRTSDYN 104 +VR+ T + EKKK+ + DYN Sbjct: 11474 SVRRPTPAREKKKKLKKKDYN 11412 >Lt_contig6967 | | 1 to 5662 Length = 5662 Score = 26.2 bits (56), Expect = 5.5 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -1 Query: 42 STVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTS 101 S N H A R + + +HK R Q EG+ R + E++KR ++ Sbjct: 4372 SVKKNAKHDNAHR*DRTRGMKQIEKRRDEHKRRAQKSKEGRHENRGTQRGREREKRGAST 4193 Query: 102 DYNPLMGDTGK 112 ++ TG+ Sbjct: 4192 GRETVVQPTGQ 4160 >Lt_contig5695 | | 1 to 8173 Length = 8173 Score = 25.8 bits (55), Expect = 7.2 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = +2 Query: 53 MEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLM 107 M RA F + TQ + G G R T + DY PLM Sbjct: 4991 MALLRALSSVPFASNRTQRRQARNTRGGGSHGGRSPTQQQTHLLKVADGDYGPLM 5155 >Lt_contig4962 | | 1 to 5100 Length = 5100 Score = 25.8 bits (55), Expect = 7.2 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Frame = +1 Query: 44 VNNESHRLAMEAARAKFQAEFNAEVTQH---KSRNQDEG-------EGKSNVRKSTDSDE 93 V N S A+ K + A V +H + RN EG EG++ V +T E Sbjct: 4897 VQNRSSDEAINITHRK*RKRRGAAVAEHWVGRHRNDAEG*GGSGPGEGQTRVTYTTPESE 5076 Query: 94 KKKRFRTS 101 +++ RTS Sbjct: 5077 RERERRTS 5100 >Lt_contig7238 | | 1 to 18302 Length = 18302 Score = 25.8 bits (55), Expect = 7.2 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -2 Query: 26 LSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQ 76 +S FL R W N+STV+N RLA E R + + +T H N+ Sbjct: 1216 VSAFLAYDLRRWA-NASTVDNSKERLAGELLRC-LDSRLHLGLTTHICGNE 1070 >Lt_contig7203 | | 1 to 10517 Length = 10517 Score = 25.8 bits (55), Expect = 7.2 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 37 WCENSSTVNNESHRLAMEAA 56 WCE++ T + HR A EAA Sbjct: 120 WCESTHTHTHTKHRRAAEAA 61 >Lt_contig3854 | | 1 to 2829 Length = 2829 Score = 25.8 bits (55), Expect = 7.2 Identities = 20/91 (21%), Positives = 37/91 (40%) Frame = -1 Query: 31 WKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTD 90 W+F S CE+ S + S L R+ + EV + + + +S R Sbjct: 720 WRFCWSCCESVSPADRRSFMLRRRDGRSTLR-----EVKPPNNTDVEVQGQQSVPRAPPQ 556 Query: 91 SDEKKKRFRTSDYNPLMGDTGKTYRPTSRFC 121 K+ + + + YN + T +PT++ C Sbjct: 555 HKHKRAQSKQAPYNTCPEMSLPTTKPTTKGC 463 >Lt_contig3848 | | 1 to 3544 Length = 3544 Score = 25.8 bits (55), Expect = 7.2 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 51 LAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKR 97 L EAA+ + Q + E + HK R + E G +T+ + K +R Sbjct: 3248 LQTEAAQRQQQRNSSRESSVHKQRGEAERHGPGGPYPTTNRNPKHRR 3388 >Lt_contig6857 | | 1 to 18254 Length = 18254 Score = 25.8 bits (55), Expect = 7.2 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -2 Query: 26 LSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQ 76 +S FL R W N+STV+N RLA E R + + +T H N+ Sbjct: 1168 VSAFLAYDLRRWA-NASTVDNSKERLAGELLRC-LDSRLHLGLTTHICGNE 1022 >Lt_contig6835 | | 1 to 12876 Length = 12876 Score = 25.8 bits (55), Expect = 7.2 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = -2 Query: 53 MEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLM 107 M RA F + TQ + G G R T + DY PLM Sbjct: 10655 MALLRALSSVPFASNRTQRRQARNTRGGGSHGGRSPTQQQTHLLKVADGDYGPLM 10491 >Lt_contig1989 | | 1 to 1230 Length = 1230 Score = 25.4 bits (54), Expect = 9.4 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = +1 Query: 49 HRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRT 100 HR + A A + T H RNQ + E K++ + +S FRT Sbjct: 496 HRGSPPATHAACRTTHRGGTTTHVQRNQKKNERKASCLRP*ESRSAINAFRT 651 >Lt_contig4235 | | 1 to 11600 Length = 11600 Score = 25.4 bits (54), Expect = 9.4 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = -2 Query: 36 SWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRK 87 S E+ +TVN + R + +A + + EVT+ K+R + S+ R+ Sbjct: 535 STAESPATVNTRNERSSQDAGKKLERHRRFLEVTESKAREESNVSTPSSKRR 380 >Lt_contig1003 | | 1 to 11733 Length = 11733 Score = 25.4 bits (54), Expect = 9.4 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = -2 Query: 73 SRNQDEGEGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKT 113 SR + +GE ++ V D +E +D PL+ G+T Sbjct: 1583 SRCRTDGEARAAVADDVDGEEHSSGEEAADEVPLVPSAGRT 1461 >Lt_contig590 | | 1 to 5130 Length = 5130 Score = 25.4 bits (54), Expect = 9.4 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Frame = +1 Query: 49 HRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNV-----RKSTDSDEKKKRFRTSDY 103 H L R + + E Q ++ + + K NV R+S S EKK R R DY Sbjct: 1372 HALTAAVGR*EREREKEMVRKQRHTKRHYKPQNKKNVIHE*GRRS--SGEKKNRDRQCDY 1545 Query: 104 NPLMGDTGKTYR 115 N + G++ R Sbjct: 1546 NTELSAEGESER 1581 >Lt_contig162 | | 1 to 2446 Length = 2446 Score = 25.4 bits (54), Expect = 9.4 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 17/104 (16%) Frame = -1 Query: 36 SWCENSSTVNNESHRL-----------AMEAARAKFQAEFNAEVTQHKSRNQDEGEGK-- 82 SW + + NNE HR+ ++A K + +E H ++ + G G+ Sbjct: 1951 SWSQPKARANNEEHRITRNHNGRVSAVVVDAQPLKSRHRRCSEQGHHTAKKKGGGGGQ*R 1772 Query: 83 ----SNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTSRFCS 122 + R + S +KKK +PL G +R R CS Sbjct: 1771 QPAVEDGR*APPSPQKKKDIP----SPLTR*LGSFFRVRHRACS 1652 >Lt_contig23 | | 1 to 6125 Length = 6125 Score = 25.4 bits (54), Expect = 9.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 18 LVTLFIIALSYFLWKFFRSWCENSSTVNNE 47 L + ++ALSY W FFR+ NS T N+ Sbjct: 3383 LTYVTLLALSYVRWHFFRN-IVNSLTYRND 3469 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.315 0.129 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,624,521 Number of Sequences: 7267 Number of extensions: 54712 Number of successful extensions: 468 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 468 length of query: 125 length of database: 10,532,946 effective HSP length: 87 effective length of query: 38 effective length of database: 9,900,717 effective search space: 376227246 effective search space used: 376227246 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.4 bits)