TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|350646170|emb|CCD59154.1| Selenoprotein S [Schistosoma mansoni] (125 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338240729|gb|AFNH01002801.1| Gregarina niphandrodes asmbl.351... 31 0.12 gi|338242369|gb|AFNH01001980.1| Gregarina niphandrodes asmbl.275... 27 1.3 gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.346... 27 2.3 gi|338242401|gb|AFNH01001964.1| Gregarina niphandrodes asmbl.274... 27 2.3 gi|338240521|gb|AFNH01002905.1| Gregarina niphandrodes asmbl.361... 25 5.0 gi|338240529|gb|AFNH01002901.1| Gregarina niphandrodes asmbl.360... 25 5.0 gi|338241153|gb|AFNH01002590.1| Gregarina niphandrodes asmbl.331... 25 5.0 gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.160... 25 5.0 gi|338239076|gb|AFNH01003626.1| Gregarina niphandrodes asmbl.949... 25 6.6 gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.364... 25 6.6 gi|338240819|gb|AFNH01002756.1| Gregarina niphandrodes asmbl.347... 25 6.6 gi|338242766|gb|AFNH01001782.1| Gregarina niphandrodes asmbl.257... 25 6.6 gi|338241374|gb|AFNH01002478.1| Gregarina niphandrodes asmbl.321... 25 8.6 gi|338242722|gb|AFNH01001804.1| Gregarina niphandrodes asmbl.259... 25 8.6 >gi|338240729|gb|AFNH01002801.1| Gregarina niphandrodes asmbl.3517, whole genome shotgun sequence Length = 9495 Score = 30.8 bits (68), Expect = 0.12 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 9/86 (10%) Frame = +3 Query: 39 ENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQ--------DEGEGKSNVRKSTD 90 + + +NNE++ L+ + + + N + Q RN+ +E +GK NV + + Sbjct: 3441 QRTGQLNNETNELSSDERQQNSDDQPNTDEKQSTDRNETDRRERDRNETDGKENVHEQQN 3620 Query: 91 SDEKKKRFR-TSDYNPLMGDTGKTYR 115 + K + TS N GKT R Sbjct: 3621 NKSKTSSMQETSTVNGRASTAGKTCR 3698 >gi|338242369|gb|AFNH01001980.1| Gregarina niphandrodes asmbl.2757, whole genome shotgun sequence Length = 10573 Score = 27.3 bits (59), Expect = 1.3 Identities = 24/100 (24%), Positives = 40/100 (40%) Frame = -3 Query: 20 TLFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEG 79 TLF++ +S+ + ++W N+ VN SH L+ + A N+ SR E Sbjct: 4766 TLFVVPVSFDKTRLGKAWLVNTLLVNARSH-LSSSCEGSSTGAVANS*AAFPFSRKGLET 4590 Query: 80 EGKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTSR 119 + + ST + K P + G + TSR Sbjct: 4589 MWQREMNHSTRRKKSAKWSSIRTQRPAVRSAGMYLQSTSR 4470 >gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.3462, whole genome shotgun sequence Length = 43533 Score = 26.6 bits (57), Expect = 2.3 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 82 KSNVRKSTDSDEKKKRFRTSDYNPLMGD 109 KS+VRKSTDS + +T+ N L+ D Sbjct: 21484 KSSVRKSTDSTKTTDSTKTTSNNKLLYD 21567 >gi|338242401|gb|AFNH01001964.1| Gregarina niphandrodes asmbl.2742, whole genome shotgun sequence Length = 14790 Score = 26.6 bits (57), Expect = 2.3 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Frame = +2 Query: 42 STVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRTS 101 +T + + + +AA A +A + + G ++ S DS+ +S Sbjct: 13328 ATYSASAGSASADAASADAADASSASAGSASAGSPSTGSAAASSSASADSENTGAAGASS 13507 Query: 102 -DYNPLMGDTGKTYRPTSRFCSTG 124 + D TYRPTS C TG Sbjct: 13508 ASADSASADAAGTYRPTSACCQTG 13579 >gi|338240521|gb|AFNH01002905.1| Gregarina niphandrodes asmbl.3611, whole genome shotgun sequence Length = 33265 Score = 25.4 bits (54), Expect = 5.0 Identities = 13/58 (22%), Positives = 25/58 (43%) Frame = +2 Query: 38 CENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKK 95 C N + SH L+ E + ++EVT H+ ++ + + + D+D K Sbjct: 3251 CTNPHREGSTSHELSSELS----SNNISSEVTSHELSETNDADDDDDAETNNDADYSK 3412 >gi|338240529|gb|AFNH01002901.1| Gregarina niphandrodes asmbl.3608, whole genome shotgun sequence Length = 43886 Score = 25.4 bits (54), Expect = 5.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -1 Query: 81 GKSNVRKSTDSDEKKKRFRTSDYNPLMGDTGKTYRPTS 118 G +N S D+ +++ R S +PL+G +T RPT+ Sbjct: 16001 GPTNRHISRRLDQGRQKQRFSPNSPLLGVQRRTSRPTA 15888 >gi|338241153|gb|AFNH01002590.1| Gregarina niphandrodes asmbl.3317, whole genome shotgun sequence Length = 30309 Score = 25.4 bits (54), Expect = 5.0 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -3 Query: 55 AARAKFQAEFNAEVTQHKSRNQDEGEGKSNVRKSTDSDEKKKRFRT 100 AA A A E + + + +G+GK V+ + ++ KKKR T Sbjct: 8362 AAAAPAAAAAAPEPKAPEPKTEKKGKGKVKVKAESPAESKKKRAST 8225 >gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.16011, whole genome shotgun sequence Length = 22759 Score = 25.4 bits (54), Expect = 5.0 Identities = 19/76 (25%), Positives = 27/76 (35%) Frame = -1 Query: 21 LFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRNQDEGE 80 L I+ + F SW + N AM A + E + KS G+ Sbjct: 19714 LMILGFANSAGVLFDSWARKQWELKNSKGESAMPAPVVE-------EKKKKKSAKPGAGQ 19556 Query: 81 GKSNVRKSTDSDEKKK 96 G K+TDS K + Sbjct: 19555 GSKGGSKATDSQVKSR 19508 >gi|338239076|gb|AFNH01003626.1| Gregarina niphandrodes asmbl.949, whole genome shotgun sequence Length = 911 Score = 25.0 bits (53), Expect = 6.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -3 Query: 54 EAARAKFQAEFNAEVTQHKSR 74 + ARAK++A F V HK+R Sbjct: 480 KVARAKYEARFEVAVRLHKAR 418 >gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.3645, whole genome shotgun sequence Length = 42255 Score = 25.0 bits (53), Expect = 6.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 Query: 35 RSWCENSSTVNNESHRL 51 RSWC +S + E HRL Sbjct: 34338 RSWCSHSGRIAFEQHRL 34388 >gi|338240819|gb|AFNH01002756.1| Gregarina niphandrodes asmbl.3473, whole genome shotgun sequence Length = 17726 Score = 25.0 bits (53), Expect = 6.6 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 24 IALSYFLWKFFRSWCENS-STVN 45 + LS+F+W FF W N STV+ Sbjct: 11991 VILSFFIWLFFLLWALNRISTVH 12059 >gi|338242766|gb|AFNH01001782.1| Gregarina niphandrodes asmbl.2577, whole genome shotgun sequence Length = 13939 Score = 25.0 bits (53), Expect = 6.6 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = -1 Query: 19 VTLFIIALSYFLWKFFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKSRN 75 V F + +S WKFFR WC S T N R +F+ + +SRN Sbjct: 2179 VCSFRVLISVHAWKFFR-WC--SCTCNGGRPRCE--------HTQFDGRAVELESRN 2042 >gi|338241374|gb|AFNH01002478.1| Gregarina niphandrodes asmbl.3214, whole genome shotgun sequence Length = 17693 Score = 24.6 bits (52), Expect = 8.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 29 FLWKFFRSWCENSSTVNNESHRLA 52 F W FR +CE T+N+ S R A Sbjct: 16280 FSWNDFRWYCERPWTLNSSSCRHA 16209 >gi|338242722|gb|AFNH01001804.1| Gregarina niphandrodes asmbl.2597, whole genome shotgun sequence Length = 10091 Score = 24.6 bits (52), Expect = 8.6 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = +3 Query: 33 FFRSWCENSSTVNNESHRLAMEAARAKFQAEFNAEVTQHKS 73 ++RS NSST+N H + + + Q+ + Q S Sbjct: 1836 YYRSTKTNSSTINKHKHTITLARPQPSTQSSVALPLPQRPS 1958 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.315 0.129 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,229,927 Number of Sequences: 3680 Number of extensions: 25906 Number of successful extensions: 133 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 133 length of query: 125 length of database: 5,120,956 effective HSP length: 83 effective length of query: 42 effective length of database: 4,815,516 effective search space: 202251672 effective search space used: 202251672 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)