TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|213511514|ref|NP_001134403.1| selenoprotein S [Salmo salar]
         (192 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic cont...    31   0.61 
gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic cont...    31   0.61 
gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    30   0.80 
gi|325185597|emb|FR824131.1| Albugo laibachii Nc14, genomic cont...    29   1.8  
gi|325188648|emb|FR824229.1| Albugo laibachii Nc14, genomic cont...    28   4.0  
gi|325184884|emb|FR824115.1| Albugo laibachii Nc14, genomic cont...    28   5.2  
gi|325186618|emb|FR824159.1| Albugo laibachii Nc14, genomic cont...    28   5.2  
gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic cont...    28   5.2  
gi|325193858|emb|FR824840.1| Albugo laibachii Nc14, genomic cont...    28   5.2  
gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont...    27   6.8  
gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont...    27   6.8  
gi|325187159|emb|FR824176.1| Albugo laibachii Nc14, genomic cont...    27   6.8  
gi|325187307|emb|FR824181.1| Albugo laibachii Nc14, genomic cont...    27   6.8  
gi|325181694|emb|FR824064.1| Albugo laibachii Nc14, genomic cont...    27   8.9  
gi|325185292|emb|FR824124.1| Albugo laibachii Nc14, genomic cont...    27   8.9  
gi|325186866|emb|FR824167.1| Albugo laibachii Nc14, genomic cont...    27   8.9  
gi|325192091|emb|FR824430.1| Albugo laibachii Nc14, genomic cont...    27   8.9  

>gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic contig
              CONTIG_35_NC14_v4_137162_207
          Length = 137162

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -1

Query: 75     QDPNAVVRRQEALEAS-RRRMQEELDAKAALFRLKQ-----QQLEEEKRQQK 120
              Q+ NA +R  E  + +  R M   LDA   LFRL+Q     QQ++E K QQK
Sbjct: 106796 QEKNASLRDLETFQRNVDRGMPPTLDAMQQLFRLQQQKWNEQQIKEIKAQQK 106641


>gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic contig
             CONTIG_72_NC14_v4_96858_243
          Length = 96858

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 26/97 (26%), Positives = 47/97 (48%)
 Frame = +1

Query: 78    NAVVRRQEALEASRRRMQEELDAKAALFRLKQQQLEEEKRQQKIEMYDSMKEGRSYRGKA 137
             NA VRR+EAL+  +R+ Q EL + A   RL     EEE  + +I+  + +K     + + 
Sbjct: 18481 NAAVRRREALQ-KQRQAQRELTSHAR--RLAVGCCEEESDRMQIDTINDVKSKLKKKTRE 18651

Query: 138   KTAQNTEEASTSTTVLKPKTDKKPLRSSGFNPLSGEG 174
             +  +  +E  ++  ++       P   +G    +GEG
Sbjct: 18652 ERVRARKEYYSTQFMIPEWMIDIPSDLNGKGSTTGEG 18762


>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
              CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 84     QEALEASRRRMQEELDAKAALFRLKQQQLEEEKRQQKIEMYDSMKEGRS 132
              ++ L+  R+R+ +EL AK    +L  +Q  +EKRQQK++   S K  R+
Sbjct: 118735 RKRLDRYRKRIDKELRAK----KLIAKQQRDEKRQQKLQQQLSRKAHRA 118869


>gi|325185597|emb|FR824131.1| Albugo laibachii Nc14, genomic contig
             CONTIG_86_NC14_v4_88104_249
          Length = 88104

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +2

Query: 155   PKTDKKPLRSSGFNPLSGEGGGSCAWRPGRRGPSAGG 191
             PKT +  LR SG     G GGG    R G RG   GG
Sbjct: 84140 PKT*QI*LRMSGRGMRGGRGGGRGGGRSGGRGGGRGG 84250


>gi|325188648|emb|FR824229.1| Albugo laibachii Nc14, genomic contig
             CONTIG_184_NC14_v4_51807_273
          Length = 51807

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 92    RRMQEELDAKAALFRLKQQQLEEEKRQ-QKIEMYDSMKEGRSYRGKAKTAQNTEEASTST 150
             RR+QEELD+        + QLEE + Q   +    +  E   + G  ++A +T   S+S 
Sbjct: 16658 RRLQEELDSTLGGKEFLENQLEELRAQVSNLVQQGNDGENSDFTGGHQSAFDTLLGSSSI 16479

Query: 151   TVLKPK 156
             + LK +
Sbjct: 16478 SSLKER 16461


>gi|325184884|emb|FR824115.1| Albugo laibachii Nc14, genomic contig
            CONTIG_70_NC14_v4_97434_242
          Length = 97434

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 126  SMKEGRSYRGKAKTAQNTEEASTSTTVLKPKTDKKPLRSSGFNPL 170
            ++  GRS++ K    Q  EEA   T+  +PK  +KP R S  NP+
Sbjct: 8740 TLGSGRSHKKK----QAVEEARRLTSWKEPKPREKPPRWSQLNPV 8862


>gi|325186618|emb|FR824159.1| Albugo laibachii Nc14, genomic contig
             CONTIG_114_NC14_v4_75190_228
          Length = 75190

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 23/86 (26%), Positives = 44/86 (51%)
 Frame = +3

Query: 54    VQHLSKRRASQGQSSSASGAVQDPNAVVRRQEALEASRRRMQEELDAKAALFRLKQQQLE 113
             +Q L +++ +Q Q   A    QD +  VRRQ+ L+  +++ Q        L +LKQQQL 
Sbjct: 32325 LQALRQQQLNQ-QQQLAQQQQQDVSPDVRRQQ-LQQLQQQHQLARSRLQHLQKLKQQQLH 32498

Query: 114   EEKRQQKIEMYDSMKEGRSYRGKAKT 139
              +++Q  ++     ++ +  +G   T
Sbjct: 32499 RKQQQYLLQRRQLQQQQQQRQGGNNT 32576


>gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic contig
             CONTIG_402_NC14_v4_21140_258
          Length = 21140

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 130   GRSYRGKAKTAQNTEEASTSTTVLKPKTDKKPLRSSGFNPLSGEGGGSCAWRPGR-RGPS 188
             GRS RG      N  ++S      KP+ D +   S G +   G  GGS   R GR RG  
Sbjct: 13169 GRSNRGGNNRRSNRNQSSGPYQSRKPQRDNQDDVSRGRDRKPGR-GGSNGGRGGRGRGRG 12993

Query: 189   AGG 191
              GG
Sbjct: 12992 RGG 12984


>gi|325193858|emb|FR824840.1| Albugo laibachii Nc14, genomic contig
            CONTIG_1023_NC14_v4_3935_344
          Length = 3935

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 30   QTVGPLLAE---YGWYLLFMCVGVYLVVQHLSKRRAS 63
            Q +G L A    Y WY+L+ C+   L V H  +R+ S
Sbjct: 2731 QLIGVLRATFSVYEWYILYYCILFLLSVAH*KRRKLS 2841


>gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig
             CONTIG_3_NC14_v4_366484_228
          Length = 366484

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 14/36 (38%), Positives = 27/36 (75%)
 Frame = -3

Query: 82    RRQEALEASRRRMQEELDAKAALFRLKQQQLEEEKR 117
             RRQ+   ASRRR +++ D +++L R++ ++L+E+ R
Sbjct: 60326 RRQQVRFASRRRRKKQKDEESSL-RVRIEELKEQIR 60222


>gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig
             CONTIG_64_NC14_v4_99844_253
          Length = 99844

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 24/106 (22%), Positives = 46/106 (43%)
 Frame = -2

Query: 55    QHLSKRRASQGQSSSASGAVQDPNAVVRRQEALEASRRRMQEELDAKAALFRLKQQQLEE 114
             +H  +RR+   +SSS S  ++  +   RR    E  RRR +    + +   R K+++ +E
Sbjct: 84297 RHHIRRRS---RSSSRSTRLRSESRRHRRSSRKEGHRRRRRSR--SSSTRCRTKRKKRDE 84133

Query: 115   EKRQQKIEMYDSMKEGRSYRGKAKTAQNTEEASTSTTVLKPKTDKK 160
             +  ++ +    S      +    K  + TE A    T+ K    K+
Sbjct: 84132 DTPRRSVSSSLSNSTKSEHEIAVKEVEITENAPIEETITKDTPTKE 83995


>gi|325187159|emb|FR824176.1| Albugo laibachii Nc14, genomic contig
             CONTIG_131_NC14_v4_68905_114
          Length = 68905

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 84    QEALEASRRRMQEELDAKAALFRLKQQQLEEEKRQQKIEMYDSMKEGRSYRGK 136
             +EA   SRRR+Q    AKA + R ++++  +E+ Q ++ M        ++ GK
Sbjct: 61143 REAESRSRRRLQRLEVAKAIVQREERERKIKEQEQNRLLMEKQRFHANAWTGK 60985


>gi|325187307|emb|FR824181.1| Albugo laibachii Nc14, genomic contig
            CONTIG_136_NC14_v4_68077_114
          Length = 68077

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 84   QEALEASRRRMQEELDAKAALFRLKQQQLEEEKRQQKIEMYDSMKEGRSYRGK 136
            +EA   SRRR+Q    AKA + R ++++  +E+ Q ++ M        ++ GK
Sbjct: 7367 REAESRSRRRLQRLEVAKAIVQREERERKIKEQEQNRLLMEKQRFHANAWTGK 7525


>gi|325181694|emb|FR824064.1| Albugo laibachii Nc14, genomic contig
             CONTIG_19_NC14_v4_197315_238
          Length = 197315

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 86    ALEASRRRMQEELDAKAALFRLKQQQLEEEKRQQKIEMYDSMKEGRSYRGKAKTAQNTEE 145
             A +  RRR +  +DA  A   L  Q    EKR+ +  +Y S K+ +    +A+   NT +
Sbjct: 20340 AFKVKRRRRKRSIDATKATTALLAQHKMAEKRKLR-RLYSSKKQEKKEADQARV--NTIK 20510

Query: 146   AS 147
             +S
Sbjct: 20511 SS 20516


>gi|325185292|emb|FR824124.1| Albugo laibachii Nc14, genomic contig
             CONTIG_79_NC14_v4_93334_198
          Length = 93334

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
 Frame = -1

Query: 57    LSKRRASQGQSSSASGAVQDPNAVVRRQEALEA-----SRRRMQEEL---DAKAALFRLK 108
             +SK RAS+        AVQ+P  V+ R++ L        R +  E L   D K +    K
Sbjct: 64846 ISKLRASELAPKGEPEAVQEPKQVISRRQRLHTVKITRDRGKRSERLSDDDGKGSAIAPK 64667

Query: 109   QQQLEEEKRQQKIEMYDSMKEGRSYRGKAKTAQNTEEASTSTTVLKPK 156
             Q+  E+ ++ +              + K K+A   E AS     L  K
Sbjct: 64666 QRIKEKLEKSE---------PDHRTKVKRKSASGNERASAERRRLLKK 64550


>gi|325186866|emb|FR824167.1| Albugo laibachii Nc14, genomic contig
             CONTIG_122_NC14_v4_71863_225
          Length = 71863

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -2

Query: 80    VVRRQEALEASRRRMQEELDAKAALFRLKQQQLEEEKR----QQKIEMYDSMKEGR-SYR 134
             VVR QE  ++   R++ E+  +     LK+ + E EKR    QQ+++  + ++  R  Y 
Sbjct: 20325 VVRLQEEFDSHHERIKYEISFRKETEELKRIEFETEKRITDIQQQLQSEERVQRLRQEYI 20146

Query: 135   GKAK 138
              +AK
Sbjct: 20145 TRAK 20134


>gi|325192091|emb|FR824430.1| Albugo laibachii Nc14, genomic contig
            CONTIG_386_NC14_v4_22325_222
          Length = 22325

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 24   DLSFLQQTVGPLLAEYGWYLLFMCVGV 50
            D S L ++V P + +  WY+ F C  V
Sbjct: 8337 DTSVL*KSVSPFILQINWYIFFSCFTV 8257


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.311    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,520,779
Number of Sequences: 3816
Number of extensions: 64452
Number of successful extensions: 326
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 279
length of query: 192
length of database: 10,913,379
effective HSP length: 94
effective length of query: 98
effective length of database: 10,554,675
effective search space: 1034358150
effective search space used: 1034358150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)