TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|33285002|ref|NP_060915.2| selenoprotein S [Homo sapiens] (189 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.3781 of Sphaeroforma arctica JP610 35 0.14 supercont1.1026 of Sphaeroforma arctica JP610 34 0.23 supercont1.19 of Sphaeroforma arctica JP610 32 0.68 supercont1.255 of Sphaeroforma arctica JP610 31 2.0 supercont1.194 of Sphaeroforma arctica JP610 30 2.6 supercont1.4239 of Sphaeroforma arctica JP610 30 3.4 supercont1.608 of Sphaeroforma arctica JP610 30 4.4 supercont1.341 of Sphaeroforma arctica JP610 29 5.8 supercont1.323 of Sphaeroforma arctica JP610 29 5.8 supercont1.2 of Sphaeroforma arctica JP610 29 5.8 supercont1.1100 of Sphaeroforma arctica JP610 29 7.6 supercont1.522 of Sphaeroforma arctica JP610 29 7.6 supercont1.125 of Sphaeroforma arctica JP610 28 9.9 supercont1.59 of Sphaeroforma arctica JP610 28 9.9 >supercont1.3781 of Sphaeroforma arctica JP610 Length = 3033 Score = 34.7 bits (78), Expect = 0.14 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = +1 Query: 112 RRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDR---KPLRGGGYNPLSG 168 R +KI+ W S +G+A+ Q+E GP SVL R+ R Y +G Sbjct: 2425 RWEKIKNWSSWLAVADTRGSARHQQQEADDGPVAGSVLSRERPRL*GSDAERHSYGVAAG 2604 Query: 169 EGGGACSWRPGR 180 GG R GR Sbjct: 2605 VAGGRNRVRVGR 2640 >supercont1.1026 of Sphaeroforma arctica JP610 Length = 25636 Score = 33.9 bits (76), Expect = 0.23 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = -2 Query: 66 AAAAVEPDVVVKRQE--ALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQ 123 AA + V++ R+E L AA +K+Q+E ++++++E K + S+Q Sbjct: 11352 AAIPLIKPVLICREEWSRLKAAYMKLQQEALGKLKRYQEANKSSADAANTHNNTQKTSVQ 11173 Query: 124 EGKS-YKGNAKKPQEEDSPG 142 +S YKG+ K+ + D+PG Sbjct: 11172 PIESAYKGSLKRDRNSDTPG 11113 >supercont1.19 of Sphaeroforma arctica JP610 Length = 240670 Score = 32.3 bits (72), Expect = 0.68 Identities = 23/94 (24%), Positives = 39/94 (41%) Frame = +3 Query: 42 ILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK 101 ++LYV + AR A D A++ V+ ++ L+ LNA+ K Sbjct: 99804 MVLYVTIALIRARADANEDEARDYKQRAIDEGYVLNQERDAHVKTLRELNVLNARFSSTK 99983 Query: 102 EKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKP 135 EKL + E + + + E ++Y G KP Sbjct: 99984 EKLAKCEADLDGTRAR----LHEAEAYTGTDHKP 100073 >supercont1.255 of Sphaeroforma arctica JP610 Length = 100705 Score = 30.8 bits (68), Expect = 2.0 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Frame = -1 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108 ++L + + +++ AA + + +A AA+ K ++E EK L E Sbjct: 52639 ERLESEAKEKAEKEAIAAAELAVRETAQREADAKLAAQEKARQEAIDNAEKAAADLYADE 52460 Query: 109 EEKRRQKIEMWDSMQ-------EGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGG 161 EE RQK+E + S ++ QE+ P++ + S+ P R Sbjct: 52459 EEMARQKVEEQEQQDAECKETTTADSSDNAEEQEQEKTEQAPTSPNEKAFGSEAVPKRDS 52280 Query: 162 GYNPLSGE 169 +P E Sbjct: 52279 SVSPKEEE 52256 >supercont1.194 of Sphaeroforma arctica JP610 Length = 117799 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 160 GGGYNPLSGEGGGACSWRPGRRGPSSGGXG 189 GGG G+GGG GRRG ++GG G Sbjct: 11263 GGGTQAGEGQGGGEKGSGKGRRGAANGGRG 11352 >supercont1.4239 of Sphaeroforma arctica JP610 Length = 2617 Score = 30.0 bits (66), Expect = 3.4 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = -1 Query: 159 RGGGYNPLSGEGGGACSWRPGRRG 182 RGGG LS GGAC W G G Sbjct: 409 RGGGVTALSVAAGGACGWVGGEGG 338 >supercont1.608 of Sphaeroforma arctica JP610 Length = 56206 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -2 Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKH 100 ++R+L + PD + ++AL A LK+ EEL + VEK+ Sbjct: 48234 KRRRLAQQITPPTPDSIAADRQALHARMLKLSEELCSAVEKN 48109 >supercont1.341 of Sphaeroforma arctica JP610 Length = 85746 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -1 Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKH 100 ++R+L + + PD + ++AL A LK EEL + VEK+ Sbjct: 24219 KRRRLAQQITPLTPDSISADRQALHARMLKRSEELYSAVEKN 24094 >supercont1.323 of Sphaeroforma arctica JP610 Length = 88495 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -1 Query: 160 GGGYNPLSGEGGGACSWRPGRRGPSSGGXG 189 GGGYN G SW G G SGG G Sbjct: 14929 GGGYNSRGPAPGDPNSWGQGAPGGQSGGYG 14840 >supercont1.2 of Sphaeroforma arctica JP610 Length = 348075 Score = 29.3 bits (64), Expect = 5.8 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 9/76 (11%) Frame = +3 Query: 118 MWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLR------GGGYNPLSGE-- 169 M+ S+ + Y A+ P+ G S S S R P G +P S Sbjct: 240129 MYKSLYNSRGYTAQARGPRAPCPLGSSQSPPAGAPSSRAPPLPARVGPSGSRSPTSSSVP 240308 Query: 170 -GGGACSWRPGRRGPS 184 AC W PG R PS Sbjct: 240309 PSLSACQWPPGTRPPS 240356 >supercont1.1100 of Sphaeroforma arctica JP610 Length = 22923 Score = 28.9 bits (63), Expect = 7.6 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +1 Query: 142 GPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGXG 189 GP +++L PL G G PL G GGG G GP G G Sbjct: 18046 GPGLTNMLPGGPGGGPLGGPGGGPLGGPGGGPLGGPGG--GPLGGPGG 18183 >supercont1.522 of Sphaeroforma arctica JP610 Length = 63712 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/83 (22%), Positives = 34/83 (40%) Frame = +1 Query: 53 ARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKR 112 A +RA D A ++ + + ++ + + LN + KEKL + E E Sbjct: 48871 ALIRARADANEDEARELIDEEYALNQKRDARVQTKRKLDVLNVRYSSTKEKLARCEAELN 49050 Query: 113 RQKIEMWDSMQEGKSYKGNAKKP 135 + + + E + Y G KKP Sbjct: 49051 NTRAQ----LHEAEIYIGTYKKP 49107 >supercont1.125 of Sphaeroforma arctica JP610 Length = 142959 Score = 28.5 bits (62), Expect = 9.9 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 16/78 (20%) Frame = +3 Query: 128 YKGNAKKPQEEDSPGPSTSSVLKRKSDRK------------PLRG--GGYNPLSGEGGGA 173 YK N K + + S S + L+ KS R PL G +P+ G Sbjct: 5223 YKLNVSKFKIQKSKPLSKTETLETKSTRSCRPITIILKNIVPLHT*PGPGSPMGWGRPGP 5402 Query: 174 CSWRPGRR--GPSSGGXG 189 SWRPGR GP GG G Sbjct: 5403 WSWRPGRLGWGPWEGGGG 5456 >supercont1.59 of Sphaeroforma arctica JP610 Length = 182127 Score = 28.5 bits (62), Expect = 9.9 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Frame = -1 Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQ---- 114 R +Q+ + +P R+ + R + +E +N + +E+R Q Sbjct: 73701 RHQQMLQQQQQGQPPNEFARESRIGKDRERREEAVNRTQGQFYPVAHPGPQERRLQPHPA 73522 Query: 115 -KIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGA 173 + + + Q+ ++ PQ+ G +T S + + R P G PLS E G Sbjct: 73521 TRTQAFGHAQDAEASPDMRDDPQQSQIRGVNTYSPQPQHAGRPPHERGQERPLSEEYGA- 73345 Query: 174 CSWRPGRRGPSSGG 187 RP GP G Sbjct: 73344 ---RPRPTGPMGDG 73312 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.313 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,352,608 Number of Sequences: 15618 Number of extensions: 294131 Number of successful extensions: 2274 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2022 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2271 length of query: 189 length of database: 40,529,447 effective HSP length: 103 effective length of query: 86 effective length of database: 38,920,793 effective search space: 3347188198 effective search space used: 3347188198 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)