TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|33285002|ref|NP_060915.2| selenoprotein S [Homo sapiens] (189 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic cont... 35 0.024 gi|325191222|emb|FR824385.1| Albugo laibachii Nc14, genomic cont... 33 0.12 gi|325185737|emb|FR824134.1| Albugo laibachii Nc14, genomic cont... 32 0.27 gi|325184366|emb|FR824103.1| Albugo laibachii Nc14, genomic cont... 32 0.35 gi|325187159|emb|FR824176.1| Albugo laibachii Nc14, genomic cont... 31 0.46 gi|325187307|emb|FR824181.1| Albugo laibachii Nc14, genomic cont... 31 0.46 gi|325190730|emb|FR824328.1| Albugo laibachii Nc14, genomic cont... 31 0.60 gi|325192801|emb|FR824517.1| Albugo laibachii Nc14, genomic cont... 30 1.0 gi|325183585|emb|FR824089.1| Albugo laibachii Nc14, genomic cont... 29 2.3 gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic cont... 29 2.3 gi|325191386|emb|FR824398.1| Albugo laibachii Nc14, genomic cont... 28 3.0 gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont... 28 3.9 gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont... 28 3.9 gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic cont... 27 6.6 gi|325182092|emb|FR824068.1| Albugo laibachii Nc14, genomic cont... 27 8.6 gi|325193126|emb|FR824580.1| Albugo laibachii Nc14, genomic cont... 27 8.6 gi|325194129|emb|FR825016.1| Albugo laibachii Nc14, genomic cont... 27 8.6 gi|325194212|emb|FR825075.1| Albugo laibachii Nc14, genomic cont... 27 8.6 gi|325196809|emb|FR827597.1| Albugo laibachii Nc14, genomic cont... 27 8.6 >gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic contig CONTIG_101_NC14_v4_78707_237 Length = 78707 Score = 35.4 bits (80), Expect = 0.024 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +1 Query: 84 AARLKMQEELNAQVEKHKEKLKQLEEEKRRQKI-EMWDSMQEGKSYKGNAKKPQEEDSPG 142 AA+ K +EE + E+ K K + +++KR K E +GK+ G KP + +P Sbjct: 45271 AAKKKKKEEAKKKEEERKRKSQNKKDKKRGGKEKEGGYGEDDGKNKDGEGVKPPPDGNPA 45450 Query: 143 PSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRG 182 P S S P G + G GGG+ S P G Sbjct: 45451 PEPES----PSGGNPAPDSGPSS-KGGGGGSKSGTPRAGG 45555 Score = 30.0 bits (66), Expect = 1.0 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 14/115 (12%) Frame = +1 Query: 86 RLKMQEEL--NAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGN-------AKKPQ 136 +L++ EE N + K+ + +EEK ++K E W+ ++ K K AKK + Sbjct: 45109 KLELDEECGKNEGDDGDKKNGSKSKEEKEKEKEEKWNKKEQKKKEKEEKLKKKKAAKKKK 45288 Query: 137 EEDSPGPSTSSVLKRKSDRKPLRG-----GGYNPLSGEGGGACSWRPGRRGPSSG 186 +E++ K ++ + RG GGY GE G G + P G Sbjct: 45289 KEEAKKKEEERKRKSQNKKDKKRGGKEKEGGY----GEDDGKNKDGEGVKPPPDG 45441 >gi|325191222|emb|FR824385.1| Albugo laibachii Nc14, genomic contig CONTIG_340_NC14_v4_26654_245 Length = 26654 Score = 33.1 bits (74), Expect = 0.12 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Frame = +1 Query: 58 LRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLK-------QLEEE 110 +++R +R VE +V QE K++EEL VEK +E+L+ +LEE Sbjct: 8743 VKERVEERVEERVEEARLVALQEESEVVVEKVREELEVVVEKVREELEVKEEELGELEEV 8922 Query: 111 KRRQKIEMWDSMQE 124 + +W+S +E Sbjct: 8923 VGEDSLVLWESREE 8964 >gi|325185737|emb|FR824134.1| Albugo laibachii Nc14, genomic contig CONTIG_89_NC14_v4_83543_230 Length = 83543 Score = 32.0 bits (71), Expect = 0.27 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = +2 Query: 78 RQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQE 137 R E L A KM EE +VEK KEK +RR+++ Q+ + Y+ KK E Sbjct: 78347 RIEELLRAIEKMPEEYVIKVEKEKEK-------ERRERVRQERITQQQRLYEERMKKSME 78505 Query: 138 EDSPGP 143 P Sbjct: 78506 RSMKAP 78523 >gi|325184366|emb|FR824103.1| Albugo laibachii Nc14, genomic contig CONTIG_58_NC14_v4_105777_247 Length = 105777 Score = 31.6 bits (70), Expect = 0.35 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 32/102 (31%) Frame = -3 Query: 71 EPDVVVKRQEALAAARLKM---------------------QEELNAQVEKHKEKLKQLEE 109 E DV V R+ ++ A R KM +EE +A +K K+K K+ Sbjct: 66184 EIDVFVNRRTSVPANRAKMVNMGPMGRRRTLHSLAMESSSEEEDDANEQKQKDKDKEETS 66005 Query: 110 EKRRQK-----------IEMWDSMQEGKSYKGNAKKPQEEDS 140 E+R + I WD E K NAK PQ S Sbjct: 66004 EQRDSQASSDLELDTRGIAAWDEPTEEKENDTNAKTPQRPQS 65879 >gi|325187159|emb|FR824176.1| Albugo laibachii Nc14, genomic contig CONTIG_131_NC14_v4_68905_114 Length = 68905 Score = 31.2 bits (69), Expect = 0.46 Identities = 20/76 (26%), Positives = 39/76 (51%) Frame = -2 Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNA 132 DV VK ++++ + + + EL Q + KLK+ ++E++++K + K K Sbjct: 62868 DVEVKVEDSMKRSSIPLDVELEVQ----RNKLKKEKKERKKEK--------KKKKEKRGK 62725 Query: 133 KKPQEEDSPGPSTSSV 148 K+ + D+ P SSV Sbjct: 62724 KRKENNDNDKPQASSV 62677 >gi|325187307|emb|FR824181.1| Albugo laibachii Nc14, genomic contig CONTIG_136_NC14_v4_68077_114 Length = 68077 Score = 31.2 bits (69), Expect = 0.46 Identities = 20/76 (26%), Positives = 39/76 (51%) Frame = +2 Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNA 132 DV VK ++++ + + + EL Q + KLK+ ++E++++K + K K Sbjct: 5642 DVEVKVEDSMKRSSIPLDVELEVQ----RNKLKKEKKERKKEK--------KKKKEKRGK 5785 Query: 133 KKPQEEDSPGPSTSSV 148 K+ + D+ P SSV Sbjct: 5786 KRKENNDNDKPQASSV 5833 >gi|325190730|emb|FR824328.1| Albugo laibachii Nc14, genomic contig CONTIG_283_NC14_v4_33374_253 Length = 33374 Score = 30.8 bits (68), Expect = 0.60 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Frame = +2 Query: 52 SARLRALRQRQLDRAAAAVEPDVVVKRQEAL-------AAARLKMQEELNAQVEKHKEKL 104 + R+ LRQ + + A E VV+ EAL A++ K + + K + Sbjct: 3101 AGRMNLLRQEETAKTVEAPENVEVVETHEALKDGDILDQASQPKGRRRRRRRKRKQNNPI 3280 Query: 105 KQLEEEKRRQKIEMWDSMQEGKSYKGNA 132 Q E E+ ++IE D++Q S N+ Sbjct: 3281 TQPEREEAEERIEHIDALQGNDSGSDNS 3364 >gi|325192801|emb|FR824517.1| Albugo laibachii Nc14, genomic contig CONTIG_476_NC14_v4_14979_269 Length = 14979 Score = 30.0 bits (66), Expect = 1.0 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = -2 Query: 80 EALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139 E+L A RL+ +E Q E+ ++ + EEE+R+ + M E K + K+ Sbjct: 5213 ESLEADRLRDEELRRLQEEQIAQQNQ--EEEERQCAVRQEKEMAEQKQKILDMKRESVRA 5040 Query: 140 SPGPSTSSVLKRKSDR 155 +P PS+ + ++ DR Sbjct: 5039 NPAPSSDTTIEGGEDR 4992 >gi|325183585|emb|FR824089.1| Albugo laibachii Nc14, genomic contig CONTIG_44_NC14_v4_128736_234 Length = 128736 Score = 28.9 bits (63), Expect = 2.3 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -2 Query: 74 VVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120 VVV + + A+LKM E A V K + L+ + E + R++ E WD Sbjct: 101096 VVVTSAKNVTLAKLKMSIETVACVRKAGKSLR*VCEVRSRRQYETWD 100956 >gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic contig CONTIG_402_NC14_v4_21140_258 Length = 21140 Score = 28.9 bits (63), Expect = 2.3 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -1 Query: 126 KSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSS 185 +S + + P + P + R DRKP RGG G G G R GR+ S+ Sbjct: 13139 RSNRNQSSGPYQSRKPQRDNQDDVSRGRDRKPGRGGSNGGRGGRGRG--RGRGGRKSRSA 12966 >gi|325191386|emb|FR824398.1| Albugo laibachii Nc14, genomic contig CONTIG_353_NC14_v4_24749_244 Length = 24749 Score = 28.5 bits (62), Expect = 3.0 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = +1 Query: 62 QLDRAAAAVEPDVVVKRQEALAAARLKMQEELN---AQVEKHKEKLKQLEEEKRRQKIEM 118 QL AAA+ +RQE LA+ + K + + V+ +E+ K E+E++ Q+I+ Sbjct: 12487 QLQHQAAALLDKQERQRQEELASIQAKQTQRVRLALLHVKTPEERAK--EDEEKSQRIQA 12660 Query: 119 WDSMQEGKSYKGNAKKPQE 137 QE + + KK +E Sbjct: 12661 RMEQQELQQSQEKEKKRKE 12717 >gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig CONTIG_2_NC14_v4_395950_240 Length = 395950 Score = 28.1 bits (61), Expect = 3.9 Identities = 19/36 (52%), Positives = 23/36 (63%) Frame = -3 Query: 78 RQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113 R EAL AARL+ Q+ L +E KE KQ E+KRR Sbjct: 231206 RDEALLAARLRQQQSL---LEASKE--KQDREKKRR 231114 >gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig CONTIG_64_NC14_v4_99844_253 Length = 99844 Score = 28.1 bits (61), Expect = 3.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 139 DSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACS 175 D P T +V+K + G GYNPL+ E G+CS Sbjct: 73981 DLPRSVTPAVMKSSM----MNGHGYNPLNREQRGSCS 73883 >gi|325192029|emb|FR824423.1| Albugo laibachii Nc14, genomic contig CONTIG_379_NC14_v4_22761_228 Length = 22761 Score = 27.3 bits (59), Expect = 6.6 Identities = 11/33 (33%), Positives = 23/33 (69%) Frame = -2 Query: 102 EKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKK 134 ++LK+L ++RQ++ +WD+ Q GKS + ++ Sbjct: 19322 DRLKELV--RKRQQLVVWDAAQRGKSLRSRLEQ 19230 >gi|325182092|emb|FR824068.1| Albugo laibachii Nc14, genomic contig CONTIG_23_NC14_v4_178735_235 Length = 178735 Score = 26.9 bits (58), Expect = 8.6 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +3 Query: 86 RLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 RLK LN V +L + E ++ W EGK + N++ +EE Sbjct: 122202 RLKTLHHLNPVVRYAPHELAKNESYLMNPHLKKWGFSSEGKIFSDNSEDLEEE 122360 >gi|325193126|emb|FR824580.1| Albugo laibachii Nc14, genomic contig CONTIG_549_NC14_v4_11446_237 Length = 11446 Score = 26.9 bits (58), Expect = 8.6 Identities = 13/64 (20%), Positives = 31/64 (48%) Frame = +1 Query: 69 AVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSY 128 A+E V + + LAA+R ++ E+N + + + E+ + +++ Q G + Sbjct: 7228 ALETQVAECKAQKLAASRQELDSEINVSLGEETDLEFLAHEQDQENQLDTDPFQQSGSPF 7407 Query: 129 KGNA 132 +G + Sbjct: 7408 RGGS 7419 >gi|325194129|emb|FR825016.1| Albugo laibachii Nc14, genomic contig CONTIG_1452_NC14_v4_2204_240 Length = 2204 Score = 26.9 bits (58), Expect = 8.6 Identities = 10/22 (45%), Positives = 18/22 (81%) Frame = +1 Query: 3 RQEESLSARPALETEGLRFLHT 24 +++ ++SA+P + TE LRFLH+ Sbjct: 2038 QRKNTISAKPLVFTESLRFLHS 2103 >gi|325194212|emb|FR825075.1| Albugo laibachii Nc14, genomic contig CONTIG_1580_NC14_v4_1908_188 Length = 1908 Score = 26.9 bits (58), Expect = 8.6 Identities = 10/22 (45%), Positives = 18/22 (81%) Frame = -1 Query: 3 RQEESLSARPALETEGLRFLHT 24 +++ ++SA+P + TE LRFLH+ Sbjct: 96 QRKNTISAKPLVFTESLRFLHS 31 >gi|325196809|emb|FR827597.1| Albugo laibachii Nc14, genomic contig CONTIG_4764_NC14_v4_171_1148 Length = 171 Score = 26.9 bits (58), Expect = 8.6 Identities = 13/30 (43%), Positives = 13/30 (43%) Frame = -1 Query: 160 GGGYNPLSGEGGGACSWRPGRRGPSSGGXG 189 GGG G GGG W G G GG G Sbjct: 159 GGGGGGGGGGGGGGGGWGGGGGGGGGGGGG 70 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.313 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,855,158 Number of Sequences: 3816 Number of extensions: 71620 Number of successful extensions: 498 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 495 length of query: 189 length of database: 10,913,379 effective HSP length: 94 effective length of query: 95 effective length of database: 10,554,675 effective search space: 1002694125 effective search space used: 1002694125 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 58 (26.9 bits)