TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Danio rerio
         (151 letters)

Database: P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig9047  4369 10313                                                 31   2.2  
Contig2630  13504 31540                                                29   6.3  

>Contig9047  4369 10313
          Length = 10313

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 110   PEDQVPEEFRFSPAKDSPFEGRQSSTAAPETTEPSDSQHTDL 151
             P    P     SP+  SP     SS     TTEPSD Q  D+
Sbjct: 10167 PPSSSPSPSSPSPSSPSPSSPSPSSATPSSTTEPSDDQSNDV 10042


>Contig2630  13504 31540
          Length = 31540

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 71   ELVLLNHYYEELDRIPLSEMTRAEINKLLAELGFYKK 107
            EL++L + YEE  R  ++ + + E  KL+ E   YKK
Sbjct: 6531 ELLILRNIYEEKSR*MINNVNKKETQKLIEEKEDYKK 6421


  Database: P.polycephalum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,570,129
Number of Sequences: 297657
Number of extensions: 589193
Number of successful extensions: 4137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4137
length of query: 151
length of database: 106,339,350
effective HSP length: 103
effective length of query: 48
effective length of database: 75,680,679
effective search space: 3632672592
effective search space used: 3632672592
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)