TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Danio rerio
         (151 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    28   2.4  
gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ...    28   3.1  
gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ...    27   4.1  

>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 6      FTALLPSVILTYEVNIEKLSGLARARVETCGGXQLNRMREVKAFVTQDIPLYHNLVMKH 64
              F  L+   +  +E++ E L G  R  VE  GG  L     ++ +V   +    NLV+KH
Sbjct: 991274 FQQLVDLGLSEFEISDETLKGWTR--VERVGGDVLGHSVGIQGWVVDRVE*VSNLVLKH 991104


>gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence
          Length = 1908399

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 3       PLIFTALLPSVILTYEVNIEKLSGLARARVET 34
               P+    ++PS + T E+N+E ++G     VET
Sbjct: 1226467 PVFDLGIIPSTVKTLELNVEDITGTLTDSVET 1226562


>gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun
               sequence
          Length = 2485436

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 106     KKDHPEDQVPEEFRFSPAKDSPFEGRQS--STAAPETTEPSDS 146
               +K+H +    E    SP +D P  G  S  ST +P TT   DS
Sbjct: 1561468 RKEHKDSPAVETNNKSPLRDQPAAGGDSPVSTNSPTTTTNYDS 1561596


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,718,286
Number of Sequences: 25
Number of extensions: 61463
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 28
length of query: 151
length of database: 10,339,736
effective HSP length: 91
effective length of query: 60
effective length of database: 10,337,461
effective search space: 620247660
effective search space used: 620247660
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)