TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Danio rerio
         (151 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    30   0.53 
gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    29   1.5  
gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso...    28   2.6  
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    27   7.6  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    26   9.9  

>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 30.4 bits (67), Expect = 0.53
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 70      PELVLLNHYYEELDRIPLSEMTRAEINKLLAELGFYK 106
               P L+ + +YY  LD++ + E   A +N+ L +L FYK
Sbjct: 1615997 PLLLTIINYYYLLDQLNIHEYNEAYLNQPLMKLNFYK 1616107


>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -3

Query: 76      NHYYEELDRIPLSEMTRAEINKLLAELG 103
               NHY+ + DR+P++  + A++++ + + G
Sbjct: 2612187 NHYFSDFDRLPIAAASLAQVHRAITKEG 2612104



 Score = 27.3 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 106     KKDHPEDQVPEEFRF-SPAKDSPFEGRQSSTAAPETTEPSDSQ 147
               +KDHP+D + +EF    P KD   + ++S+   P+  +  D Q
Sbjct: 1212530 EKDHPKDHIFKEFIIDEPMKDG--DEKESTNEPPQQQKQQDQQ 1212408



 Score = 26.2 bits (56), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 74      LLNHYYEELD--RIPLSEMTRAEINKLLAELGFYKKDH 109
               LLNH YEEL      L  +    + KL+  L  YK DH
Sbjct: 1198542 LLNHLYEELQLKYEELDLVVHLILYKLVVHLVLYKLDH 1198655


>gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole
               genome shotgun sequence
          Length = 3602379

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 56      LYHNLVMKHIPGADPELVLLNHYY 79
               L+H+L+  HI   D + + LN+YY
Sbjct: 1074112 LFHSLISNHIKSVDLDYLHLNYYY 1074041


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 46      VKAFVTQDIPLYHNLVMKHIPGADPELVLLNH-YYEELD 83
               V  F+  D P   NL+++  P   P+LVLL+H  Y+++D
Sbjct: 4694366 VHGFLHSD-PHPGNLLVRKTPNGKPDLVLLDHGLYKKID 4694253



 Score = 26.2 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 73      VLLNHYYEELDRIPLSEMTRAEINKLLAELGFYKK 107
               ++LNHY++E+ +I L  M +    KLL+ + + K+
Sbjct: 5235329 MILNHYHQEVMKIQLKLMNQRI*LKLLSNMKWKKR 5235433


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -2

Query: 24      LSGLARARVETCGGXQLNRMREVKAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELD 83
               L+  +  R+ET         +E    + ++I L H ++++ +     +      Y+E L 
Sbjct: 7377955 LNSNSSTRLETLNYLIETFKKETNKSINKEIELSHEVLLQSL-----DSTCEIEYHERLF 7377791

Query: 84      RIPLSEMTRAEIN--KLLAEL 102
               ++ L+++ R+EIN  +LL +L
Sbjct: 7377790 KLCLNDLKRSEINIARLLGKL 7377728


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,915,544
Number of Sequences: 6
Number of extensions: 70534
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 170
length of query: 151
length of database: 11,314,357
effective HSP length: 91
effective length of query: 60
effective length of database: 11,313,811
effective search space: 678828660
effective search space used: 678828660
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)