TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Danio rerio
         (151 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848000|gb|ADNL01002603.1| Astrammina rara contig03080, who...    24   1.6  
gi|330848470|gb|ADNL01002133.1| Astrammina rara contig02550, who...    23   3.6  
gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, who...    22   4.7  
gi|330848561|gb|ADNL01002042.1| Astrammina rara contig02436, who...    22   4.7  
gi|330850487|gb|ADNL01000116.1| Astrammina rara contig00122, who...    22   6.2  
gi|330848942|gb|ADNL01001661.1| Astrammina rara contig01972, who...    22   8.1  
gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268, who...    22   8.1  
gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, who...    22   8.1  

>gi|330848000|gb|ADNL01002603.1| Astrammina rara contig03080, whole
            genome shotgun sequence
          Length = 8271

 Score = 23.9 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 81   ELDRIPLSEMTRAEINKLLAEL 102
            ++ R+P S M R +I ++LAE+
Sbjct: 1800 DVHRVPASNMARCQI*RVLAEI 1865


>gi|330848470|gb|ADNL01002133.1| Astrammina rara contig02550, whole
           genome shotgun sequence
          Length = 398

 Score = 22.7 bits (47), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   LIFTALLPSVILTYEVNIEKLSGLAR 29
           LIF A+ PSV L Y V  +    +AR
Sbjct: 253 LIFLAVFPSVFLEYIVL*DASEAIAR 330


>gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, whole
           genome shotgun sequence
          Length = 1679

 Score = 22.3 bits (46), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 55  PLYHNLVMKHIP 66
           P+YHNL + H P
Sbjct: 515 PVYHNLTVDHSP 550


>gi|330848561|gb|ADNL01002042.1| Astrammina rara contig02436, whole
           genome shotgun sequence
          Length = 171

 Score = 22.3 bits (46), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 7   TALLPSVILTYEVNIEKLSGLARARVETC 35
           T LLPS+ L     +++ SGL  +R E C
Sbjct: 167 TNLLPSLNLEQCPIVDRKSGLRPSRHEVC 81


>gi|330850487|gb|ADNL01000116.1| Astrammina rara contig00122,
          whole genome shotgun sequence
          Length = 161

 Score = 21.9 bits (45), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 1  MWPLIFTALLPS 12
          +WP IF+ LLP+
Sbjct: 72 IWPFIFSRLLPN 37


>gi|330848942|gb|ADNL01001661.1| Astrammina rara contig01972, whole
           genome shotgun sequence
          Length = 137

 Score = 21.6 bits (44), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 119 RFSPAKDSPFEGRQ 132
           RFSPAK +  +GR+
Sbjct: 73  RFSPAKHNAIDGRK 32


>gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268,
          whole genome shotgun sequence
          Length = 881

 Score = 21.6 bits (44), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 58 HNLVMKHIPGADPELVLLNHYY 79
          H+L   ++P A P  V L+H Y
Sbjct: 57 HSLGNTNLPSAPP*TVCLHHIY 122


>gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, whole
            genome shotgun sequence
          Length = 9271

 Score = 21.6 bits (44), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 67   GADPELVLLNHYY 79
            G  P LVL+NH Y
Sbjct: 8034 GGQPPLVLVNHSY 7996


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,722
Number of Sequences: 3231
Number of extensions: 2220
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 483,365
effective HSP length: 67
effective length of query: 84
effective length of database: 266,888
effective search space: 22418592
effective search space used: 22418592
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)