TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Chlamydomonas reinhardtii 2 (138 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_30 30 0.53 contig_27 29 1.2 contig_35 28 1.5 contig_33 28 1.5 contig_26 28 2.0 contig_23 28 2.0 contig_19 28 2.0 contig_21 28 2.6 contig_34 27 3.4 contig_05 27 3.4 contig_32 27 4.4 contig_20 27 4.4 contig_11 27 4.4 contig_10 27 4.4 contig_07 27 4.4 contig_16 27 5.8 contig_14 27 5.8 contig_12 27 5.8 contig_09 27 5.8 contig_04 27 5.8 contig_03 27 5.8 contig_24 26 7.6 contig_15 26 7.6 contig_13 26 7.6 contig_06 26 7.6 contig_36 26 9.9 contig_22 26 9.9 >contig_30 Length = 1374157 Score = 30.0 bits (66), Expect = 0.53 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +3 Query: 104 RRDPNAAAATTTATASTRRARAARRLLRATEE 135 RRD +A + TT+A S R R R+ RATE+ Sbjct: 89148 RRDASAQSGTTSARPSCRYQRTRTRVRRATEQ 89243 Score = 26.2 bits (56), Expect = 7.6 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +3 Query: 86 DKLKYDELHTLVQSKGFKRRDPNAAAATTTATASTRRARAARR 128 D + YD L LV +R AATT+AT +T A ARR Sbjct: 164511 DGVMYDVLLDLVMIH--RRATRGGGAATTSATIATDAATLARR 164633 >contig_27 Length = 1024085 Score = 28.9 bits (63), Expect = 1.2 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +2 Query: 104 RRDPNAAAATTTATASTRRARAARRLLRATEETA 137 R P A A TTA +R ARA R LLR + A Sbjct: 840659 RPPPTATATPTTAPPPSRSARARRPLLRPQSDCA 840760 >contig_35 Length = 2113966 Score = 28.5 bits (62), Expect = 1.5 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = +1 Query: 90 YDELHTLVQSKGFKRRDPNAAAATTTATASTRR-------ARAARR 128 + L+TL+ S + AAAA TTATA+ R ARA RR Sbjct: 300508 FTSLYTLLTSGAAREEKEAAAAAMTTATAAASRGSGEAVAARAERR 300645 Score = 25.8 bits (55), Expect = 9.9 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +2 Query: 99 SKGFKRRDPNAAAATTTATASTRRARAAR-RLLRATEETAC 138 S+ +R A+AAT T++ + + ARAAR +R T C Sbjct: 303551 SRSRQRMARGASAATRTSSCTRQNARAARSSWIRTTSSPRC 303673 >contig_33 Length = 1453978 Score = 28.5 bits (62), Expect = 1.5 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = +1 Query: 97 VQSKGFKRRDPNAAAATTTATASTRR------ARAARRLLRATEETAC 138 V+ +G R ++ + +AS RR AR+ARRL R T TAC Sbjct: 1126234 VRRRGSLRSSASSRRRSARRSASVRRRRSAWPARSARRLGRTTPSTAC 1126377 Score = 26.9 bits (58), Expect = 4.4 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -1 Query: 90 YDELHTLVQSKGFKRRDPNAAAATTTATASTRRARAARRLLRATEETAC 138 Y ++T+ + F RD A + A A+ +R +A RLL AT T+C Sbjct: 573268 YGAVYTVWLAAIFFTRD--FALSAKVAVAAEKRGKARIRLLAATSTTSC 573128 Score = 26.6 bits (57), Expect = 5.8 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 102 FKRRDPNAAAATTTATASTRRARAARRLLR 131 F + +PNA TTT T S ARA ++ R Sbjct: 1090557 FPKHEPNATRPTTTTTRSLS*ARALPQMRR 1090468 Score = 26.6 bits (57), Expect = 5.8 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Frame = -1 Query: 90 YDELHTLVQSKGFKRR----DPNAAAATTTATASTRR--ARAARRLLRA 132 +++LH L++ +G RR +A+AAT AT R AR +++L RA Sbjct: 1081066 HEQLHCLLRRQGAGRRGYGGKLHASAATALATGPPRNLLARLSKKLSRA 1080920 >contig_26 Length = 1058259 Score = 28.1 bits (61), Expect = 2.0 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -1 Query: 102 FKRRDPNAAAATTTATASTRRARAARRLLR 131 ++R AAA TTA A+T+ AR AR+ R Sbjct: 711642 WRRGTTAGAAACTTAAAATKAARGARKTAR 711553 Score = 26.6 bits (57), Expect = 5.8 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = -1 Query: 86 DKLKYD---ELHTLVQSK-----GFKRRDPNAAAATTTATASTRRARAARRLLRATEETA 137 D+L+ D ++H L++++ GFK+ AA AT A A+TR + ARR + TA Sbjct: 910689 DRLREDRFAQVHRLLRARVVRFDGFKQL---AAQATGCAAAATR--KCARRAVVRAAHTA 910525 Query: 138 C 138 C Sbjct: 910524 C 910522 >contig_23 Length = 783272 Score = 28.1 bits (61), Expect = 2.0 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +2 Query: 105 RDPNAAAATTTATASTRRARAARRLLRATEETAC 138 R NAAA T A S+ R ARR RA E C Sbjct: 481499 RHRNAAACTPLARRSSAVVRVARRSRRAAAERIC 481600 Score = 25.8 bits (55), Expect = 9.9 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +3 Query: 93 LHTLVQSKGFKRRDPNAAAATTTATASTRRARAARRL 129 LH L +S+ + R P AAAA T R RA+RRL Sbjct: 459768 LHLLPRSRR-RCRHPAAAAAEDTMQVRRRLRRASRRL 459875 >contig_19 Length = 757180 Score = 28.1 bits (61), Expect = 2.0 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +3 Query: 91 DELHTLVQSKGFKRRDPNAAAATTTATASTRRA--RAARRL 129 D HT Q+ RD N AATT ATA+ + R A RL Sbjct: 677289 DSAHTAHQASSTNTRDLNHRAATTAATATDADSFQRRANRL 677411 >contig_21 Length = 767234 Score = 27.7 bits (60), Expect = 2.6 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 105 RDPNAAAATTTATASTRRARAA 126 RDPN A AT +ATA+ R R A Sbjct: 449388 RDPNTAVATVSATAAPRDDRLA 449323 Score = 26.2 bits (56), Expect = 7.6 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +2 Query: 104 RRDPNAAAATTTATASTRRARAARRLLRA 132 RRD AAA TTA +AARR +R+ Sbjct: 616097 RRDAMNAAAVTTAVPPKEARQAARRPMRS 616183 >contig_34 Length = 1750858 Score = 27.3 bits (59), Expect = 3.4 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -2 Query: 100 KGFKRRDPNAAAATTTATASTRRARAARRLLRATEETA 137 K +R AAAA +R+ AARRL R+T+ TA Sbjct: 961155 KAAAQRRQRAAAAVDYRRDRRQRSMAARRLPRSTQRTA 961042 Score = 25.8 bits (55), Expect = 9.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 105 RDPNAAAATTTATASTRRARAARRLLRATEET 136 R +ATTT+ AS+R A + RLLR + + Sbjct: 144914 RSTKRVSATTTSRASSRCASSRTRLLRRSRSS 145009 Score = 25.8 bits (55), Expect = 9.9 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = +3 Query: 65 GRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRDPNAAAATTTATA 118 G T +L L+ +GV L D +H LV GF+R A ATTTA+A Sbjct: 1317894 GHTFQLNLFHLSGVF--------LGPDRMHVLVFD-GFRRLCAGTATATTTASA 1318028 >contig_05 Length = 452426 Score = 27.3 bits (59), Expect = 3.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 96 LVQSKGFKRRDPNAAAATTTATASTRRARAARRLLR 131 L+Q + +RRD +AAA + A+ AR A L R Sbjct: 68330 LLQPEALRRRDAHAAAGAAASVAAAGAARHATALRR 68223 Score = 25.8 bits (55), Expect = 9.9 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 4/32 (12%) Frame = +3 Query: 110 AAATTTATAS---TRR-ARAARRLLRATEETA 137 AAATTTATA+ TRR +AARR R TA Sbjct: 250449 AAATTTATAAMPMTRRMPKAARRS*RVETSTA 250544 >contig_32 Length = 1559911 Score = 26.9 bits (58), Expect = 4.4 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 93 LHTLVQSKGFKRRDPNAAAATTTATASTRRARAAR 127 LHT+ + K R+ AAA ATA+ A AAR Sbjct: 1398215 LHTVPSANTRKPRNTTLAAAVAAATATPAAAAAAR 1398319 Score = 26.6 bits (57), Expect = 5.8 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 9/43 (20%) Frame = -2 Query: 105 RDPNAAAATTTAT---------ASTRRARAARRLLRATEETAC 138 RDP A A AT A +R+ AARR R TEE C Sbjct: 491277 RDPPALHAHALATSAETPARPPAQSRQGSAARRAPRPTEERRC 491149 Score = 26.2 bits (56), Expect = 7.6 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 88 LKYDELHTLVQSKGFKRRDPNAAAATTTATASTRRARAA 126 L YD LHTL + AAAT+ ++ST AA Sbjct: 574301 LFYDHLHTLASNASEGAAAQLTAAATSPTSSSTANVSAA 574185 >contig_20 Length = 752621 Score = 26.9 bits (58), Expect = 4.4 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = +3 Query: 77 GVEIERMFVDKLKYDELHTLVQSKGFKRRDPNAAAATTTATASTRRARAA-------RRL 129 G + FVD E+ L+ S+ D A +T +A RRA AA R Sbjct: 77289 GC*VTMAFVDASTAAEMTRLIVSQSTVAADEGAMGCSTNGSAPDRRASAAALTIVWQRNT 77468 Query: 130 LRATEETA 137 L AT +T+ Sbjct: 77469 LHATFKTS 77492 Score = 25.8 bits (55), Expect = 9.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 108 NAAAATTTATASTRRARAARRLLRATEET 136 NAAA+T A RR RAAR + A T Sbjct: 203853 NAAASTAVARGPCRRRRAARVMAVACSST 203939 >contig_11 Length = 580223 Score = 26.9 bits (58), Expect = 4.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 95 TLVQSKGFKRRDPNAAAATTTATASTRRARAARRLLRATEETAC 138 TL +S G + ++++ T + ASTR A+R TAC Sbjct: 529834 TLCRSSGVRASTRSSSSLTPSCGASTRSTSASRAAPTGAPRTAC 529965 Score = 25.8 bits (55), Expect = 9.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 102 FKRRDPNAAAATTTATASTRRARAARRLLRATE 134 F+RR+ + ++T T R RAA RLL E Sbjct: 77763 FRRREASRTGSSTATTQLR*RGRAAARLLAPQE 77665 >contig_10 Length = 558170 Score = 26.9 bits (58), Expect = 4.4 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +3 Query: 108 NAAAATTTATASTRRARAARRLLRATEETAC 138 +AAA+ T+ T S R RRL RAT TAC Sbjct: 194130 SAAASCTSGTRSAARGGKRRRLRRAT--TAC 194216 >contig_07 Length = 604754 Score = 26.9 bits (58), Expect = 4.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 103 KRRDPNAAAATTTATASTRRARAARRLLRA 132 +RR AAA T T +RRAR R RA Sbjct: 293743 RRRSATAAAETEAGTQKSRRAREGRGARRA 293654 >contig_16 Length = 698406 Score = 26.6 bits (57), Expect = 5.8 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%) Frame = -2 Query: 96 LVQSKGFKR------RDPNAAAATTTATASTRRARAARRLLRAT 133 LV S F+R R P+ AA+ +T + STRRAR RR L +T Sbjct: 557105 LVLSAVFRRTSSRCHRSPHVAASGSTRS-STRRARR*RRCLTST 556977 >contig_14 Length = 645099 Score = 26.6 bits (57), Expect = 5.8 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 99 SKGFKRRDPNAAAATTTATASTRRARAARR 128 S+GF+ N +T+ TA RR RAA R Sbjct: 295020 SRGFRNATQNQTKSTSPTTAPGRRNRAAGR 295109 >contig_12 Length = 569561 Score = 26.6 bits (57), Expect = 5.8 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 102 FKRRDPNAAAATTTATASTRRARAARR 128 + R P+AAA +TATA T R R R Sbjct: 517690 YSRTLPSAAARHSTATAKTHRGRLGAR 517610 Score = 25.8 bits (55), Expect = 9.9 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +2 Query: 84 FVDKLKYDELHT--LVQSKGFKRRDPNAAAATTTATASTRRARAARRLLRATEETAC 138 F L LHT +++S G R AAAA T AT TR + AARR R C Sbjct: 447278 FTAALHSAPLHTARVIESAGVSR----AAAAGTPATP-TRESAAARRRCRGVVLRRC 447433 >contig_09 Length = 588727 Score = 26.6 bits (57), Expect = 5.8 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 9/36 (25%) Frame = -2 Query: 106 DPNAAAA---------TTTATASTRRARAARRLLRA 132 DP AAAA TTA+A++RR R ARR + A Sbjct: 509274 DPAAAAA*ADHGPRAPHTTASATSRRVRVARRAVPA 509167 >contig_04 Length = 479467 Score = 26.6 bits (57), Expect = 5.8 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = +3 Query: 109 AAAATTTATASTRRARAARRLLRAT 133 A AA T+ATAST + RRLLR T Sbjct: 327846 AVAAGTSATASTVAPDSLRRLLRYT 327920 >contig_03 Length = 389946 Score = 26.6 bits (57), Expect = 5.8 Identities = 14/20 (70%), Positives = 14/20 (70%) Frame = -3 Query: 109 AAAATTTATASTRRARAARR 128 AAAA T ATA TRRA RR Sbjct: 148219 AAAADTHATAPTRRAHLRRR 148160 Score = 25.8 bits (55), Expect = 9.9 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -3 Query: 107 PNAAAATTTATASTRRARAARRLLRATEETA 137 P+AAAATT+ TA T ++RR A+ TA Sbjct: 262507 PSAAAATTSCTART----SSRRCAAASSATA 262427 >contig_24 Length = 877124 Score = 26.2 bits (56), Expect = 7.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -1 Query: 101 GFKRRDPNAAAATTTATASTRRARAARRLLRA 132 G + D AAA TATA RR+R R +A Sbjct: 714752 GESKSDSEEAAAAKTATAVRRRSRRGRASAKA 714657 Score = 25.8 bits (55), Expect = 9.9 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = -2 Query: 98 QSKGFKRRDPNAAAATTTATAS-----TRRARAARRLLRAT 133 +S R + A TT+AT+ TRR+R+A RL RAT Sbjct: 156913 RSTSTSSRASRSPATTTSATSLSAGSVTRRSRSAGRLQRAT 156791 >contig_15 Length = 618357 Score = 26.2 bits (56), Expect = 7.6 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = -1 Query: 98 QSKGFKRRDPNAAAATTTATASTRRARA 125 Q G RRD AAAA TTA A+ R A Sbjct: 472737 QQWGAARRDYVAAAAVTTAEAAVHRGGA 472654 >contig_13 Length = 649814 Score = 26.2 bits (56), Expect = 7.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 107 PNAAAATTTATASTRRARAARRLLRA 132 PN AA + A+ T R R RRL RA Sbjct: 601943 PNDAAGVSQASCDTSRNREIRRLARA 601866 >contig_06 Length = 529559 Score = 26.2 bits (56), Expect = 7.6 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +1 Query: 96 LVQSKGFKRRDPNAAAATTTATASTRRARA---ARRLLRA 132 ++ +K RRD A + +T+STRRAR A RL RA Sbjct: 164959 MLATKSTTRRDVATAPCAS*STSSTRRARMPP*ALRLARA 165078 >contig_36 Length = 2713248 Score = 25.8 bits (55), Expect = 9.9 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +1 Query: 103 KRRDPNAAAATTTATASTRRARAARR 128 +RR P A ATTT+ A+TRR A R Sbjct: 281596 RRRSP-AQDATTTSAAATRRGSGASR 281670 >contig_22 Length = 704761 Score = 25.8 bits (55), Expect = 9.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 107 PNAAAATTTATASTRRARAARRLLRATEETA 137 P AA ATTTATA + R + + +T + A Sbjct: 242003 PEAACATTTATAVAGQGRTSAPAVTSTAQGA 241911 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.320 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,984,169 Number of Sequences: 36 Number of extensions: 65394 Number of successful extensions: 1292 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 999 Number of HSP's gapped (non-prelim): 659 length of query: 138 length of database: 10,814,999 effective HSP length: 90 effective length of query: 48 effective length of database: 10,811,759 effective search space: 518964432 effective search space used: 518964432 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)