TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chlamydomonas reinhardtii 2
         (138 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ...    32   0.18 
gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ...    30   0.51 
gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    27   3.3  
gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ...    27   4.3  
gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced ...    27   4.3  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    26   9.7  

>gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun
              sequence
          Length = 941765

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +1

Query: 24     RGEFISCPGXRLNHLPEVKKFIRGDIEKDKAYENLTVNFVPGRTPELVLYDEN------G 77
              RGE ++  G  +N  P +KK   G          +T + V      +VL D+N      G
Sbjct: 911446 RGEIVAVTGDGVNDSPALKKADLG------CAMGITGSEVAKEAAAIVLLDDNFSSIVSG 911607

Query: 78     VEIERMFVDKLKYDELHTL 96
              +E  RM  DKLK    +TL
Sbjct: 911608 IEEGRMIFDKLKKSITYTL 911664


>gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun
               sequence
          Length = 2750715

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 93      LHTLVQ-SKGFKRRDPNAAAATTTATASTRRARAARRLLRAT 133
               +HTL+  S GF+R        TTT  +STR   +  R+LR+T
Sbjct: 2545291 IHTLID*SNGFRR----TTTTTTTNVSSTRTTSSTTRILRST 2545178


>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence
          Length = 3408800

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 95      TLVQSKGFKRRDPNAAAATTTATASTRR 122
               T+ Q+KG K +  N +  TTT T  TRR
Sbjct: 2797722 TITQNKG*KEKTRN*SCTTTTTTTWTRR 2797805


>gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun
              sequence
          Length = 1908399

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 55     YENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSK 100
              Y+N+ ++ VPGR P   ++      +     + +K+D+L   V  K
Sbjct: 286973 YDNVDIDDVPGREPPAYVHLRTSAGLRSNIGNDIKFDKLTLSVPGK 286836


>gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun
              sequence
          Length = 1429294

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 107    PNAAAATTTATASTRRARAARRLLRATEET 136
              P AAA TTT T +T R+    R  R T  T
Sbjct: 269553 PAAAATTTTTTTTTARSTTTTRPTRPTYTT 269464


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 101     GFKRRDPNAAAATTTATASTRRARAARRLLRAT 133
               G   R    AAATTTA A+TR +   R    AT
Sbjct: 3123980 GATTRPSTTAAATTTAGATTRPSTTGRPTSAAT 3123882



 Score = 25.8 bits (55), Expect = 9.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 101    GFKRRDPNAAAATTT 115
              GF  RD N AAATTT
Sbjct: 158073 GFNNRDSNTAAATTT 158029


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.320    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,925,126
Number of Sequences: 25
Number of extensions: 29859
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 78
length of query: 138
length of database: 10,339,736
effective HSP length: 89
effective length of query: 49
effective length of database: 10,337,511
effective search space: 506538039
effective search space used: 506538039
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)