TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Chlamydomonas reinhardtii 2 (138 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 32 0.11 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 30 0.42 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 27 3.6 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 27 4.7 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 27 4.7 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 26 7.9 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 32.3 bits (72), Expect = 0.11 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Frame = +1 Query: 24 RGEFISCPGXRLNHLPEVKKFIRGDIEKDKAYENLTVNFVPGRTPELVLYDEN------G 77 RGE ++ G +N P +KK G +T + V +VL D+N G Sbjct: 1131775 RGEIVAVTGDGVNDSPALKKADLG------CAMGITGSDVAKEAASIVLLDDNFASIIAG 1131936 Query: 78 VEIERMFVDKLKYDELHTL 96 VE RM DKLK +TL Sbjct: 1131937 VEEGRMIFDKLKKSICYTL 1131993 Score = 28.1 bits (61), Expect = 2.1 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Frame = +2 Query: 26 EFISCPGXRLNHLPEVKKFIRGDIEKDKAY-----------ENLTVNFVPGRTPELVLYD 74 E ++C + L V GD+EKDK Y L + G PE ++ Sbjct: 2046389 EHLTCFAGGMYALAAVSNITGGDVEKDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFN 2046568 Query: 75 ENGVEIE 81 +NG EIE Sbjct: 2046569 QNG-EIE 2046586 Score = 26.9 bits (58), Expect = 4.7 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 48 DIEKDKAYENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRD 106 ++EK + +N + R+PE EN ++ ERM +D+ K+DE ++K + D Sbjct: 4505671 EMEKQTVPTDSQINEMIARSPEEFELYEN-MDKERMEIDQKKWDEAGKKGEAKRLSQED 4505498 Score = 26.2 bits (56), Expect = 7.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 112 ATTTATASTRRARAARRLLRATEET 136 A+TTAT +T RAR + R T +T Sbjct: 2634309 ASTTATTTTTRARTTKTKTRKTRKT 2634235 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 30.4 bits (67), Expect = 0.42 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 13/69 (18%) Frame = +2 Query: 48 DIEKDKAYENL----TVNFVPGRTPELV---------LYDENGVEIERMFVDKLKYDELH 94 D++++K ++L T + +PG T L+ L+D G++ R + L DEL Sbjct: 4699880 DLDREKLLKSLQSKITTSVLPGTTLNLLSLPLWDNSTLFDTPGIDNPRQMIKNLTIDELK 4700059 Query: 95 TLVQSKGFK 103 ++ SK K Sbjct: 4700060 QVIPSKRIK 4700086 Score = 28.5 bits (62), Expect = 1.6 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -2 Query: 31 PGXRLNHLPEVKKFI-RGDIEKDKAYENLTVNFVPGRTPELVLYDENGV 78 P LN + K + +G+ N+TV F PG + YDE GV Sbjct: 3610258 PNFLLNSIDTSKPLVVKGNFSDGSTLNNITVIFPPGSGTFRLYYDETGV 3610112 Score = 27.7 bits (60), Expect = 2.7 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = -2 Query: 65 GRTPELVL------YDENGVE-IERMFVDKLKYDELHTLVQSKGFK 103 G+ P ++L YD N ++ I+ +D LKY +L S GFK Sbjct: 3249082 GQFPRVLLSYLSIDYDNNYIDKIDENIIDDLKYGQLPLYTDSNGFK 3248945 Score = 26.6 bits (57), Expect = 6.1 Identities = 8/18 (44%), Positives = 17/18 (94%) Frame = -3 Query: 40 EVKKFIRGDIEKDKAYEN 57 E+K+++RGD+++ KA++N Sbjct: 4549089 EIKRYVRGDMQEVKAHKN 4549036 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 27.3 bits (59), Expect = 3.6 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 99 SKGFKRRDPNAAAATTTATASTRRARAARRL 129 S +K + P TTT A+TRR R R + Sbjct: 2549679 SDSYKPQKPKTTTTTTTTAAATRRKRRRRSI 2549587 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 26.9 bits (58), Expect = 4.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 107 PNAAAATTTATASTRRARAARRL 129 PN ATTT T + +R+ + RRL Sbjct: 2797288 PNTTTATTTTTTTNKRSDSKRRL 2797356 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 26.9 bits (58), Expect = 4.7 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 60 VNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRD 106 + + RT E V YD+NGV I + ++ +L E H +Q KG RR+ Sbjct: 69975 IGAILNRTVE-VWYDKNGVVITKEYIKEL---EKH-FIQIKGHSRRE 69850 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 26.2 bits (56), Expect = 7.9 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +3 Query: 107 PNAAAATTTATASTRRARAARR 128 P AAAATTTA A+T RR Sbjct: 3930174 PAAAAATTTAAATTTATTTIRR 3930239 Score = 26.2 bits (56), Expect = 7.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 95 TLVQSKGFKRRDPNAAAATTTATAST 120 T++ F + N A TTT TAST Sbjct: 808124 TIITKNNFNNNNNNITATTTTTTAST 808047 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.320 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,967,841 Number of Sequences: 6 Number of extensions: 30461 Number of successful extensions: 313 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 168 Number of HSP's gapped (non-prelim): 268 length of query: 138 length of database: 11,314,357 effective HSP length: 90 effective length of query: 48 effective length of database: 11,313,817 effective search space: 543063216 effective search space used: 543063216 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)