TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chlamydomonas reinhardtii 1
         (140 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5330  |  | 1 to 14026                                         28   1.5  
Lt_contig4734  |  | 1 to 4767                                          28   2.5  
Lt_contig275  |  | 1 to 10127                                          28   2.5  
Lt_contig6003  |  | 1 to 10172                                         27   3.3  
Lt_contig5929  |  | 1 to 23817                                         27   5.6  
Lt_contig5807  |  | 1 to 8589                                          27   5.6  
Lt_contig5135  |  | 1 to 5368                                          26   7.4  

>Lt_contig5330  |  | 1 to 14026
          Length = 14026

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 6    LASLLLLLTVAGAAAQ-EAASAPAYELNEAGQRMVFISC 43
            LA+ L   T +GAAA  +AASA A E   A    +F +C
Sbjct: 3893 LANCLRSATASGAAAAIQAASAQAAEATHAASEEIFFTC 4009


>Lt_contig4734  |  | 1 to 4767
          Length = 4767

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 19   AAQEAASAPAYELNEAGQRMVFISCSGXRLK 49
            +A  ++ +  Y ++++GQR+  +SCS  R K
Sbjct: 2865 SAASSSFSAVYNISQSGQRLAIVSCSWPRSK 2773


>Lt_contig275  |  | 1 to 10127
          Length = 10127

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 2   RFPTLASLLLLLTVAGAAAQEAASAPA 28
           RFP + +LLL+L +AG A ++   AP+
Sbjct: 246 RFPRVPTLLLVLVLAG*AVRDVEGAPS 166


>Lt_contig6003  |  | 1 to 10172
          Length = 10172

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 2    RFPTLASLLLLLTVAGAAAQEAASAPAYE-LNEAG 35
            RFP L    L L+VAG  A+ +   PA E LNEAG
Sbjct: 6842 RFPALFP-SLKLSVAGGCAERSVGVPAGEFLNEAG 6741


>Lt_contig5929  |  | 1 to 23817
          Length = 23817

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 2     RFPTLASLLLLLTVAGAAAQEAASAPAYELNEAGQRMVF 40
             R PT+ ++LLLL V     +++AS    E  E G   VF
Sbjct: 12508 RDPTVVAMLLLLHVVRTEKRKSASVGVKEAGERGT*TVF 12392


>Lt_contig5807  |  | 1 to 8589
          Length = 8589

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 52   PEVKRFLYDVVRPNLYHGVTVDFTPGRSPAAYLYDADNQLVDDGY 96
            P +   LYD+    + +  T    PG S  A   +A    +D GY
Sbjct: 7533 PRLSALLYDMDDDEVVNDATASSAPGESATAATDNAAQHHIDPGY 7667


>Lt_contig5135  |  | 1 to 5368
          Length = 5368

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 13   LTVAGAAAQEAASAPAYELNEAGQR 37
            L  AGA+A  A SAPAYE     +R
Sbjct: 4056 LLAAGASAGSALSAPAYEAAGGSER 3982


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,762,661
Number of Sequences: 7267
Number of extensions: 64586
Number of successful extensions: 330
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of query: 140
length of database: 10,532,946
effective HSP length: 89
effective length of query: 51
effective length of database: 9,886,183
effective search space: 504195333
effective search space used: 504195333
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)