TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chlamydomonas reinhardtii 1
         (140 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_09                                                              30   0.71 
contig_15                                                              27   3.5  
contig_21                                                              26   7.9  

>contig_09
          Length = 588727

 Score = 29.6 bits (65), Expect = 0.71
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 8      SLLLLLTVAGAAAQEAASAPAYELNEAGQRMVFISCS 44
              S+L  +T    AA  AA+AP   + EAG +++  SCS
Sbjct: 262190 SMLACVTAVAVAAAVAAAAPCGTIKEAGWKVLRRSCS 262080


>contig_15
          Length = 618357

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 4     PTLASLLLLLTVAGAAAQEAASAPAY 29
             PTL+S L LLT+   A Q+AA+  AY
Sbjct: 76589 PTLSSSLWLLTMETLAHQDAAAVDAY 76512


>contig_21
          Length = 767234

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
 Frame = +3

Query: 21     QEAASAPAYELNEAGQRMVFISC---SGXRLKHLPEVKRFLYDVV-RPNLYHGVTVDFTP 76
              Q+ A  P Y+L E     V   C    G RL   P   +    ++ RP L   ++ +   
Sbjct: 184539 QDRAEVPVYQLREGVDTAV--PCRPNGGIRL*DRPVASQTCEQLLLRPALVRNLSCNLAE 184712

Query: 77     GRSPA-------AYLYDADNQLVDDG 95
              GRSPA         L  A + + DDG
Sbjct: 184713 GRSPAKRHDTHHTILRVASSSVFDDG 184790



 Score = 26.2 bits (56), Expect = 7.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 2      RFPTLASLLLLLTVAGAAAQEAASAPAY 29
              R P     LLLL  AGAAA +  S  AY
Sbjct: 181159 RNPKRLQFLLLLAAAGAAAPQTRSISAY 181076


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,020,178
Number of Sequences: 36
Number of extensions: 71229
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 34
length of query: 140
length of database: 10,814,999
effective HSP length: 90
effective length of query: 50
effective length of database: 10,811,759
effective search space: 540587950
effective search space used: 540587950
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)