TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bos taurus
         (119 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.403 of Sphaeroforma arctica JP610                           28   5.1  
supercont1.184 of Sphaeroforma arctica JP610                           27   6.7  
supercont1.492 of Sphaeroforma arctica JP610                           27   8.7  

>supercont1.403 of Sphaeroforma arctica JP610
          Length = 77443

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 72    SDMTREEINALVQELGFYRKASPDEPVPPEYLRAPAR 108
             ++ T + +  LVQE+G   KASP  P  P+ L A  R
Sbjct: 42006 NEFTNKIVELLVQEVGMLHKASP--PYRPQVLGAAER 41902


>supercont1.184 of Sphaeroforma arctica JP610
          Length = 121854

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 89    YRKASPDEPVPPEYLRAPARPAGDAPDH 116
             YR+ +P  P+PP   RAP    G A DH
Sbjct: 40337 YRRTNPMSPMPP---RAPEARGGVAQDH 40263


>supercont1.492 of Sphaeroforma arctica JP610
          Length = 68151

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 12    ARARVETCGGXQ-LNRLKEVKAFVTQDIPLYHNLVMKHLPGADPELVL 58
             ARA V      Q + R KEV+ + ++ I +Y N V++  P +D  LVL
Sbjct: 38113 ARALVRDDAAFQRVQRAKEVRDYSSRRISIYVNNVLRR*PESDLGLVL 38256


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.320    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,534,123
Number of Sequences: 15618
Number of extensions: 183336
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of query: 119
length of database: 40,529,447
effective HSP length: 93
effective length of query: 26
effective length of database: 39,076,973
effective search space: 1016001298
effective search space used: 1016001298
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)