TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Bos taurus (119 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338240825|gb|AFNH01002753.1| Gregarina niphandrodes asmbl.347... 28 0.69 gi|338241630|gb|AFNH01002350.1| Gregarina niphandrodes asmbl.309... 28 0.90 gi|338241195|gb|AFNH01002569.1| Gregarina niphandrodes asmbl.329... 27 1.2 gi|338240955|gb|AFNH01002689.1| Gregarina niphandrodes asmbl.341... 27 1.5 gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.335... 27 1.5 gi|338241322|gb|AFNH01002504.1| Gregarina niphandrodes asmbl.323... 27 1.5 gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.346... 27 2.0 gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.365... 26 2.6 gi|338241309|gb|AFNH01002512.1| Gregarina niphandrodes asmbl.324... 26 3.4 gi|338240763|gb|AFNH01002784.1| Gregarina niphandrodes asmbl.350... 25 4.4 gi|338241121|gb|AFNH01002606.1| Gregarina niphandrodes asmbl.333... 25 4.4 gi|338241227|gb|AFNH01002553.1| Gregarina niphandrodes asmbl.328... 25 4.4 gi|338241582|gb|AFNH01002374.1| Gregarina niphandrodes asmbl.311... 25 4.4 gi|338242203|gb|AFNH01002063.1| Gregarina niphandrodes asmbl.283... 25 4.4 gi|338242397|gb|AFNH01001966.1| Gregarina niphandrodes asmbl.274... 25 4.4 gi|338239850|gb|AFNH01003241.1| Gregarina niphandrodes asmbl.600... 25 5.8 gi|338240434|gb|AFNH01002949.1| Gregarina niphandrodes asmbl.365... 25 5.8 gi|338241438|gb|AFNH01002446.1| Gregarina niphandrodes asmbl.318... 25 5.8 gi|338239441|gb|AFNH01003445.1| Gregarina niphandrodes asmbl.785... 25 7.6 gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.332... 25 7.6 gi|338241332|gb|AFNH01002499.1| Gregarina niphandrodes asmbl.323... 25 7.6 gi|338242620|gb|AFNH01001855.1| Gregarina niphandrodes asmbl.264... 25 7.6 gi|338242780|gb|AFNH01001775.1| Gregarina niphandrodes asmbl.257... 25 7.6 gi|338240781|gb|AFNH01002775.1| Gregarina niphandrodes asmbl.349... 24 9.9 gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.349... 24 9.9 gi|338241650|gb|AFNH01002340.1| Gregarina niphandrodes asmbl.308... 24 9.9 gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.268... 24 9.9 >gi|338240825|gb|AFNH01002753.1| Gregarina niphandrodes asmbl.3470, whole genome shotgun sequence Length = 5846 Score = 28.1 bits (61), Expect = 0.69 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -1 Query: 70 PLSDMTREEINALVQELGFYRKASPDEPVPPEYLRAP--ARPAGDAP 114 PLS T E +AL Q Y +SP P+PP LR P P+ AP Sbjct: 4136 PLSAETPE*QSALQQSAAAYATSSPLPPLPP--LRPPP*QSPSNSAP 4002 >gi|338241630|gb|AFNH01002350.1| Gregarina niphandrodes asmbl.3096, whole genome shotgun sequence Length = 13064 Score = 27.7 bits (60), Expect = 0.90 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = -1 Query: 42 HNLVMKHLPGA--DPELVLLGHRFEELERIPLSDMTREEINALVQELGFYRKASPDEPVP 99 H + K L G P+ + R + +R+P D ++ Q+ G + PD+ Sbjct: 3491 HQPITKRLKGKRLQPKRRVKSDRVPDQDRVPDQDRGPDQDRGPDQDRGPDQNRGPDQNRG 3312 Query: 100 PEYLRAPARPAGDAPDH 116 P+ R P + G PDH Sbjct: 3311 PDQNRGPDQDQG--PDH 3267 >gi|338241195|gb|AFNH01002569.1| Gregarina niphandrodes asmbl.3299, whole genome shotgun sequence Length = 11715 Score = 27.3 bits (59), Expect = 1.2 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = +3 Query: 60 GHRFEELERIPLSDMTREEINALVQELGFY--RKASPDEPVPPEYLRAPARP 109 G FE + +T + N L F R+++P P PP Y +AP P Sbjct: 2616 GFGFEASVGSCVMGVTSDHWNILASTYAFMSRRESAPSRPTPPSYEKAPYWP 2771 >gi|338240955|gb|AFNH01002689.1| Gregarina niphandrodes asmbl.3410, whole genome shotgun sequence Length = 2954 Score = 26.9 bits (58), Expect = 1.5 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 66 LERIPLSDMTREEINALVQELGFYRKASPDEPVPPEYLRAPARP-AGD 112 LE PL + T E + LV + + D P+P Y +P+R AGD Sbjct: 925 LEESPLENSTAFEESTLVDPCRTFARDCEDLPLPLAYGHSPSRTHAGD 1068 >gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.3357, whole genome shotgun sequence Length = 19635 Score = 26.9 bits (58), Expect = 1.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 80 NALVQELGFYRKASPDEPVPPEYLRAPARPA 110 N L +G A+P +P+PP Y + P RP+ Sbjct: 13874 NPLALRVGATLHATPSKPIPPSYTQ-PQRPS 13963 >gi|338241322|gb|AFNH01002504.1| Gregarina niphandrodes asmbl.3238, whole genome shotgun sequence Length = 11697 Score = 26.9 bits (58), Expect = 1.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 84 QELGFYRKASPDEPVPPEYLRAPARPAGDAPDH 116 +E F+ ASP E P + RA G +P H Sbjct: 896 EEASFFETASPPEAFPLDIFRAIFSNVGTSPQH 994 >gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.3462, whole genome shotgun sequence Length = 43533 Score = 26.6 bits (57), Expect = 2.0 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = -2 Query: 56 LVLLGHRFEELERIPLSDMTREEINALVQELGFYRKASPDEPVPPEYLRAPARPAGDAPD 115 L+ L F +++ + + DM+ E + L KA + P P E R R A A D Sbjct: 34364 LIYLWILFRQIDGVGVYDMSMESVMLF---LASTIKALDEPPTPAETFRCRLRGAVPASD 34194 Query: 116 H 116 H Sbjct: 34193 H 34191 >gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657, whole genome shotgun sequence Length = 20249 Score = 26.2 bits (56), Expect = 2.6 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 58 LLGHRF-EELERIPLSDMTREEINAL 82 LLG R EELE PLS+ R E+N L Sbjct: 9283 LLGKRVAEELEMKPLSENLRSELNVL 9360 >gi|338241309|gb|AFNH01002512.1| Gregarina niphandrodes asmbl.3245, whole genome shotgun sequence Length = 12420 Score = 25.8 bits (55), Expect = 3.4 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = -1 Query: 90 RKASPDEPVPPEY 102 RKA+P EPVPP++ Sbjct: 9102 RKAAPKEPVPPQW 9064 >gi|338240763|gb|AFNH01002784.1| Gregarina niphandrodes asmbl.3501, whole genome shotgun sequence Length = 13826 Score = 25.4 bits (54), Expect = 4.4 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 7/29 (24%) Frame = -3 Query: 94 PDEPVPPEYLRAPAR-------PAGDAPD 115 P PVPP LR PAR P APD Sbjct: 10302 P*APVPPSTLRPPARSPTSRSSPRSSAPD 10216 >gi|338241121|gb|AFNH01002606.1| Gregarina niphandrodes asmbl.3331, whole genome shotgun sequence Length = 13433 Score = 25.4 bits (54), Expect = 4.4 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Frame = +3 Query: 49 LPGAD-PELVLLGHRFEELERIPLSDMTREEINALVQELGFYRKASPDEPVPPEYLRAPA 107 +PG P L + G L + LSD + + L ++L SPD PPE P Sbjct: 11568 IPGLSIPGLSIPGLVIPALSILALSDFSPDFCRELPRDL------SPDRSTPPERSPPPL 11729 Query: 108 RPAGDA 113 R +A Sbjct: 11730 RSTAEA 11747 >gi|338241227|gb|AFNH01002553.1| Gregarina niphandrodes asmbl.3283, whole genome shotgun sequence Length = 20284 Score = 25.4 bits (54), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -3 Query: 91 KASPDEPVPPEYLRAPARPAGDAPDHA 117 K+S P PP +R P RPA +P A Sbjct: 18086 KSSFGYPAPPTRVRTPPRPAPASPPTA 18006 >gi|338241582|gb|AFNH01002374.1| Gregarina niphandrodes asmbl.3118, whole genome shotgun sequence Length = 14723 Score = 25.4 bits (54), Expect = 4.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 Query: 90 RKASPDEPVPPEYLRAPARPAGDAPD 115 RK P PP+ ++ P+RP + PD Sbjct: 14121 RKRPPSLQPPPKTMKPPSRPELEKPD 14044 >gi|338242203|gb|AFNH01002063.1| Gregarina niphandrodes asmbl.2834, whole genome shotgun sequence Length = 10335 Score = 25.4 bits (54), Expect = 4.4 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = +3 Query: 55 ELVLLGHR----FEELERIPLSDMTREEINALVQELG-FYRKASPDEPVPPEYLRAPARP 109 EL+ HR F L+ + M+ ++++ LV L A PD+P+ AP+ P Sbjct: 2373 ELMFDAHRSMPAFRCLDVLDDGTMSADDLSLLVHTLSQLTAGARPDDPLWTSPSPAPSPP 2552 Query: 110 AGDAPDH 116 +P+H Sbjct: 2553 PYSSPNH 2573 >gi|338242397|gb|AFNH01001966.1| Gregarina niphandrodes asmbl.2744, whole genome shotgun sequence Length = 14893 Score = 25.4 bits (54), Expect = 4.4 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -1 Query: 93 SPDEPVPPEYLRAPARPAGDAP 114 SP+ P+P PARP P Sbjct: 3064 SPESPIPDNVYHPPARPPASQP 2999 Score = 24.3 bits (51), Expect = 9.9 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -1 Query: 28 KEVKAFVTQDIPLYHNLVMKHLPGADPELVLLGH 61 K++ V Q L H+ + PG P L LGH Sbjct: 3460 KKLAGHVNQRFSLKHSCPLTASPGTSPLLHALGH 3359 >gi|338239850|gb|AFNH01003241.1| Gregarina niphandrodes asmbl.600, whole genome shotgun sequence Length = 1931 Score = 25.0 bits (53), Expect = 5.8 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 90 RKASPDEPVPPEYLRAPARPAGD 112 RKASPD VP PAGD Sbjct: 1589 RKASPDVAVPANVRFLETEPAGD 1657 >gi|338240434|gb|AFNH01002949.1| Gregarina niphandrodes asmbl.3652, whole genome shotgun sequence Length = 5383 Score = 25.0 bits (53), Expect = 5.8 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +1 Query: 90 RKASPDEPVPPEYLRAPARPAGD 112 RKASPD VP PAGD Sbjct: 1858 RKASPDVAVPASVRFLETEPAGD 1926 >gi|338241438|gb|AFNH01002446.1| Gregarina niphandrodes asmbl.3186, whole genome shotgun sequence Length = 46593 Score = 25.0 bits (53), Expect = 5.8 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -1 Query: 94 PDEPVPPEYLRAPARPAGDAP 114 P P+P + AP+RP G P Sbjct: 32277 PPRPLPASFPSAPSRPPGTPP 32215 >gi|338239441|gb|AFNH01003445.1| Gregarina niphandrodes asmbl.785, whole genome shotgun sequence Length = 1834 Score = 24.6 bits (52), Expect = 7.6 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +1 Query: 80 NALVQELGFYRKASPDEPVPPEYL 103 +AL+ LG+ K PD+P+ +L Sbjct: 643 DALIPRLGYNHKVEPDKPIDIVFL 714 >gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.3320, whole genome shotgun sequence Length = 11721 Score = 24.6 bits (52), Expect = 7.6 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +3 Query: 3 PDWNRLQGLARARVETCGGXQLN 25 P WNR L +RV TC +N Sbjct: 11217 PRWNRTASLGTSRVATCRHPLIN 11285 >gi|338241332|gb|AFNH01002499.1| Gregarina niphandrodes asmbl.3233, whole genome shotgun sequence Length = 9413 Score = 24.6 bits (52), Expect = 7.6 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 14 ARVETCGGXQLNRLKEVKAFVTQDIPL 40 A +CGG L RL++ A + D+PL Sbjct: 774 ATPSSCGGFPLQRLEQSLARLPADLPL 854 >gi|338242620|gb|AFNH01001855.1| Gregarina niphandrodes asmbl.2642, whole genome shotgun sequence Length = 26459 Score = 24.6 bits (52), Expect = 7.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 2 RPDWNRLQGLARARVETCGGXQL 24 RPD+ R +G+ R C G QL Sbjct: 7149 RPDYGRQEGVPALRAGLCRGGQL 7217 >gi|338242780|gb|AFNH01001775.1| Gregarina niphandrodes asmbl.2570, whole genome shotgun sequence Length = 15169 Score = 24.6 bits (52), Expect = 7.6 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 91 KASPDEPVPPEYLRAPARPAG 111 + +P +P PP L P+ PAG Sbjct: 4485 RTAPKQPRPPAKLSRPSSPAG 4547 >gi|338240781|gb|AFNH01002775.1| Gregarina niphandrodes asmbl.3494, whole genome shotgun sequence Length = 36679 Score = 24.3 bits (51), Expect = 9.9 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 5/38 (13%) Frame = +2 Query: 85 ELGFYRKASPDEPVPPEYL-----RAPARPAGDAPDHA 117 +L F+ P P P L RAP RPAG AP A Sbjct: 25997 KLPFFGPPRPRAPPPRPPLEGPPPRAPPRPAGLAPGSA 26110 >gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.3492, whole genome shotgun sequence Length = 21532 Score = 24.3 bits (51), Expect = 9.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 62 RFEELERIPLSDMTREEINA 81 RFE L R+P +D RE++ A Sbjct: 9583 RFETLARVPSADFGREKLPA 9524 >gi|338241650|gb|AFNH01002340.1| Gregarina niphandrodes asmbl.3086, whole genome shotgun sequence Length = 3654 Score = 24.3 bits (51), Expect = 9.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 90 RKASPDEPVPPEYLRAPARPAG 111 R++S EP PPE L + A P+G Sbjct: 650 RQSSVFEPHPPEALSSEALPSG 585 >gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.2680, whole genome shotgun sequence Length = 56005 Score = 24.3 bits (51), Expect = 9.9 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +3 Query: 92 ASPDEPVPPEYLRAPARPAGDAP 114 A+P P PP L PARP P Sbjct: 3654 ATPPAPPPPPTLLQPARPPPARP 3722 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.320 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,611,063 Number of Sequences: 3680 Number of extensions: 37902 Number of successful extensions: 285 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 284 length of query: 119 length of database: 5,120,956 effective HSP length: 82 effective length of query: 37 effective length of database: 4,819,196 effective search space: 178310252 effective search space used: 178310252 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)