TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bos taurus
         (119 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847447|gb|ADNL01003156.1| Astrammina rara contig02683, who...    24   1.1  
gi|330850394|gb|ADNL01000209.1| Astrammina rara contig00219, who...    23   1.4  
gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, who...    22   3.2  
gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, who...    22   4.2  
gi|330849160|gb|ADNL01001443.1| Astrammina rara contig01712, who...    22   5.5  
gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, who...    21   7.2  
gi|330848380|gb|ADNL01002223.1| Astrammina rara contig02656, who...    21   9.3  
gi|330850334|gb|ADNL01000269.1| Astrammina rara contig00280, who...    21   9.3  

>gi|330847447|gb|ADNL01003156.1| Astrammina rara contig02683, whole
            genome shotgun sequence
          Length = 2184

 Score = 23.9 bits (50), Expect = 1.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -3

Query: 97   PVPPEYLRAPARPAGDAPD-----HAD 118
            P PP Y++ P +   + PD     HAD
Sbjct: 1168 PAPPAYIKEPVKLVPNVPD*FSKSHAD 1088


>gi|330850394|gb|ADNL01000209.1| Astrammina rara contig00219, whole
            genome shotgun sequence
          Length = 6385

 Score = 23.5 bits (49), Expect = 1.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 8    LQGLARARVETCGGXQLNRLKEVKAFVTQ 36
            L GLAR R   C G  L  LKE +A + +
Sbjct: 5907 LIGLARFRGGQCLGEYLTALKEGEALIAK 5821


>gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, whole
           genome shotgun sequence
          Length = 1679

 Score = 22.3 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 39  PLYHNLVMKHLP 50
           P+YHNL + H P
Sbjct: 515 PVYHNLTVDHSP 550


>gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, whole
           genome shotgun sequence
          Length = 718

 Score = 21.9 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 40  LYHNLVMKHLPGADPELVLLGHRFEELE 67
           L+H +  + LPGA P L     + E +E
Sbjct: 706 LFHKVSKRFLPGAPPPLTPATVK*ESIE 623


>gi|330849160|gb|ADNL01001443.1| Astrammina rara contig01712, whole
           genome shotgun sequence
          Length = 140

 Score = 21.6 bits (44), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 90  RKASPDEPVPPEY 102
           R + P EPV P+Y
Sbjct: 35  RSSEPSEPVKPQY 73


>gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, whole
           genome shotgun sequence
          Length = 1448

 Score = 21.2 bits (43), Expect = 7.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 41  YHNLVMKHLPGADPELVLLGHRFEELERIPLSDMTR 76
           YH L ++ L   +  LVL+       + +P S + R
Sbjct: 334 YHTLHLRRLGQVELSLVLVVRHISAAQPVPQSTIPR 227


>gi|330848380|gb|ADNL01002223.1| Astrammina rara contig02656, whole
           genome shotgun sequence
          Length = 1281

 Score = 20.8 bits (42), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 21  GXQLNRLKEVKAFVTQDIPLYHNLVMKHLPGADPELVLLGHRF 63
           G  L+R  E   F   D    H+LVM  + G  P   ++GH F
Sbjct: 339 GEILHRTDEY--FSQYDCCSIHSLVMN*V*GYYPFTGIIGHEF 461


>gi|330850334|gb|ADNL01000269.1| Astrammina rara contig00280, whole
            genome shotgun sequence
          Length = 4054

 Score = 20.8 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 38   IPLYHNLVMKHL 49
            IP+YH+ V  HL
Sbjct: 2526 IPMYHHQVQHHL 2561


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,624
Number of Sequences: 3231
Number of extensions: 1764
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 483,365
effective HSP length: 64
effective length of query: 55
effective length of database: 276,581
effective search space: 15211955
effective search space used: 15211955
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)