TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bos taurus
         (119 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic cont...    27   2.2  
gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic cont...    27   2.9  
gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic cont...    27   2.9  
gi|325184173|emb|FR824099.1| Albugo laibachii Nc14, genomic cont...    27   3.8  
gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic cont...    26   6.5  

>gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic contig
             CONTIG_82_NC14_v4_91335_233
          Length = 91335

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 7     RLQGLARARVETCGGXQLNRLKEVKAFVTQDIPLYHNLV 45
             ++Q +A  R + C   +LNR  E++     +I + H+LV
Sbjct: 23836 QMQSMAPPRNKVCWSRRLNRPDEIEPLTDSNIGINHHLV 23720


>gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic contig
             CONTIG_146_NC14_v4_62822_155
          Length = 62822

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 23    QLNRLKEVKAFVTQDIPLYHNLVMKHLP 50
             Q NR+ + +     DIPLY++++  H P
Sbjct: 27920 QYNRVNKSRLHAKCDIPLYNHIITHHAP 28003


>gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic contig
             CONTIG_228_NC14_v4_42414_133
          Length = 42414

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 23    QLNRLKEVKAFVTQDIPLYHNLVMKHLP 50
             Q NR+ + +     DIPLY++++  H P
Sbjct: 12810 QYNRVNKSRLHAKCDIPLYNHIITHHAP 12727


>gi|325184173|emb|FR824099.1| Albugo laibachii Nc14, genomic contig
             CONTIG_54_NC14_v4_109827_242
          Length = 109827

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 93    SPDEPVPPEYLRAPARPAGDAPDHA 117
             +P +  PP   R PAR +G+AP  +
Sbjct: 17914 TPSDAFPPTRCRDPARSSGEAPSES 17988


>gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic contig
             CONTIG_168_NC14_v4_55484_241
          Length = 55484

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 40    LYHNLVMKHLPGADP 54
             L+HNL++ HLPG  P
Sbjct: 50849 LFHNLILIHLPGEIP 50805


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.320    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,195,879
Number of Sequences: 3816
Number of extensions: 49317
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of query: 119
length of database: 10,913,379
effective HSP length: 87
effective length of query: 32
effective length of database: 10,581,387
effective search space: 338604384
effective search space used: 338604384
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)