TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= thalassiosira pseudonana
         (171 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_15                                                       32   0.42 
PHYCAscaffold_2                                                        29   3.5  
PHYCAscaffold_80                                                       28   4.6  
PHYCAscaffold_48                                                       28   6.1  
PHYCAscaffold_95                                                       28   7.9  

>PHYCAscaffold_15
          Length = 1032281

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = -3

Query: 82     ELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSK 141
              EL+++T    + + +L    AEK  V     EL ER + +   +G +   LEAQ      
Sbjct: 359445 ELDRVTEQMESFQAQLAQSTAEKEEVTIALAELRERSEADKLASGEVTAKLEAQVAENQT 359266

Query: 142    REQKL----QMKER-LKKLQTARD 160
               E K+    QM E+ L+ LQ++RD
Sbjct: 359265 LENKISVLKQMAEKALQSLQSSRD 359194


>PHYCAscaffold_2
          Length = 1925921

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +1

Query: 33     ESCSGXALNRLPELKSFLKDLNGVDLYKNVEVHFISGKRAVLTIFEGGRELEKITLSDYN 92
              E+CSG       E+K  L+ L      K+ EVH++  +   L   + G + +K    DY 
Sbjct: 544258 ENCSGN------EVKKMLQQLLEAPR-KSREVHWMHLQVDALIREDTGLDWQKHCQEDYK 544416

Query: 93     DKEKLHTLFAEKGFVKYTGVELAERRK 119
              ++ +    F E+    + G+EL E+R+
Sbjct: 544417 EQLQAFQRFLEQSEKVHQGLELMEQRE 544497


>PHYCAscaffold_80
          Length = 185445

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 53     LNGVDLYKNVEVHFISGKRAVLTIFEGGREL-----EKITLSDYNDKEKLHTLFAEK 104
              LN + L  N  VH + G   + T F G  E+     +++ + D ND+ +LH  F  K
Sbjct: 170204 LNNLFLMDNYRVHTV-GISEIRTTFSGAIEISL*DVKRVVIMDNNDRVRLHE*FEYK 170371


>PHYCAscaffold_48
          Length = 534789

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 107    VKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERLKKLQ 156
              +K   VEL E R    E+  SL   L+  +   +KRE  +Q+    KKL+
Sbjct: 324571 LKQRQVELMEHRNSREEKEASLDIALKQVQLEAAKRESVVQLLLSRKKLK 324422


>PHYCAscaffold_95
          Length = 141949

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 50   LKDLNGVDLY-----KNVEVHFISGKRAVLTIFEGGRELEKITLSDYNDKEKLHTL 100
            L++L GVDL+     K++ V     K+ +  I E  +  EK++ S+   KEKLH++
Sbjct: 5493 LQELGGVDLFEQFVPKDLLVRADGVKQEIQAILE--QTAEKVSKSNEAAKEKLHSM 5654


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.318    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,920,948
Number of Sequences: 917
Number of extensions: 94936
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 174
length of query: 171
length of database: 21,341,249
effective HSP length: 97
effective length of query: 74
effective length of database: 21,252,300
effective search space: 1572670200
effective search space used: 1572670200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)