TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= thalassiosira pseudonana
         (171 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5364  |  | 1 to 8375                                          30   1.0  
Lt_contig3494  |  | 1 to 6465                                          30   1.0  
Lt_contig7138  |  | 1 to 11915                                         29   1.3  
Lt_contig1033  |  | 1 to 3991                                          28   3.0  
Lt_contig5713  |  | 1 to 11838                                         27   6.7  
Lt_contig3961  |  | 1 to 1048                                          27   8.7  
Lt_contig33  |  | 1 to 15443                                           27   8.7  

>Lt_contig5364  |  | 1 to 8375
          Length = 8375

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +3

Query: 70   KRAVLTIFEGGRELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQ 129
            K+A ++   G     +   +D   +  LHTL      +     +  ERR+V A   G  Q
Sbjct: 7767 KQAEMSAVNGDVSCVRAGCADDAKRRMLHTLLHRPANMS----QRIERRQVNARRCGQRQ 7934

Query: 130  KTLEAQRYSLSKREQKLQMKER 151
            KT + Q+  + K+   L   +R
Sbjct: 7935 KTQQQQQQPVHKKSSCLPSHQR 8000


>Lt_contig3494  |  | 1 to 6465
          Length = 6465

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = -3

Query: 70   KRAVLTIFEGGRELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQ 129
            K+A ++   G     +   +D   +  LHTL      +     +  ERR+V A   G  Q
Sbjct: 2899 KQAEMSAVNGDVSCVRAGCADDAKRRMLHTLLHRPANMS----QRIERRQVNARRCGQRQ 2732

Query: 130  KTLEAQRYSLSKREQKLQMKER 151
            KT + Q+  + K+   L   +R
Sbjct: 2731 KTQQQQQQPVHKKSSCLPSHQR 2666


>Lt_contig7138  |  | 1 to 11915
          Length = 11915

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
 Frame = -3

Query: 24   QEQRLTGLIESCSGXALNRLPELKSFLKDLNGVDLYKNVEV------HFISGKRAVLTIF 77
            Q +     +E     ALN+L E    L  L   D Y+N+++      H I   R  +   
Sbjct: 9057 QHEERYNALEKRMADALNQLNEKDEQLHHLTSADDYENLKLEQESLTHEIDLYRQRIAFL 8878

Query: 78   EGGRELEKITLSD--YNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQ 135
            E  R+      S+   ++ + L TL A K  +           K+E E      +  +AQ
Sbjct: 8877 ETNRKTFDDAASETALDETKVLETLSASKERIS----------KLEFERDQLAVQLQQAQ 8728

Query: 136  RYSLSKREQKLQMKER 151
             Y++S+  +  Q+++R
Sbjct: 8727 TYAVSRDAEARQLQQR 8680


>Lt_contig1033  |  | 1 to 3991
          Length = 3991

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 22   DAQEQRLTGLIESCSGXALNRLPELKSFLKDLNGVDLYKNVEVHFIS-GKRAVLTI 76
            DA  Q L  + ++ +    ++LP+++   + +NG   Y+ VEV  +  G + VLT+
Sbjct: 2289 DALPQPLKTVTQTSTVTGSSQLPQVEKTTQGMNGNSAYEAVEVMVVDRGTQTVLTV 2122


>Lt_contig5713  |  | 1 to 11838
          Length = 11838

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 104  KGFVKYTGVELAE--RRKVEAEETGSLQKTLEAQRYS 138
            KGF   T   +A   +R ++AEE  SLQ+ L A+ Y+
Sbjct: 9633 KGFDPETAAFMASASKRSIDAEEDTSLQEALTAELYA 9523


>Lt_contig3961  |  | 1 to 1048
          Length = 1048

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 78  EGGRELEKITLSDYNDKEKLHTLFAE--KGFVKYTGVELAERRKVE 121
           EGG+E   I +  YND     T F++  K   KY   +  ++RKVE
Sbjct: 907 EGGKESMSIFICAYNDTFTALTSFSKHTKKRAKYRARKKKKKRKVE 1044


>Lt_contig33  |  | 1 to 15443
          Length = 15443

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 6     IFPPVLLFLSM-----LLVWSDAQEQRLTGLIESCSGXALNRLPELKS 48
             IFPP+ L+L M     LL       +R+  LI  CSG A  RLP  K+
Sbjct: 12972 IFPPLQLWLCMRTSSFLLQSVCVHPRRVCRLI--CSGPARGRLPRAKA 13109


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.318    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,539,432
Number of Sequences: 7267
Number of extensions: 48765
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 171
length of database: 10,532,946
effective HSP length: 92
effective length of query: 79
effective length of database: 9,864,382
effective search space: 779286178
effective search space used: 779286178
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)