TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= thalassiosira pseudonana
         (171 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338240869|gb|AFNH01002732.1| Gregarina niphandrodes asmbl.345...    29   0.90 
gi|338240421|gb|AFNH01002956.1| Gregarina niphandrodes asmbl.365...    27   3.4  
gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.346...    26   5.8  
gi|338244955|gb|AFNH01000687.1| Gregarina niphandrodes asmbl.159...    26   7.6  
gi|338241588|gb|AFNH01002371.1| Gregarina niphandrodes asmbl.311...    25   9.9  
gi|338241680|gb|AFNH01002325.1| Gregarina niphandrodes asmbl.307...    25   9.9  

>gi|338240869|gb|AFNH01002732.1| Gregarina niphandrodes asmbl.3451,
            whole genome shotgun sequence
          Length = 6710

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = -1

Query: 93   DKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERL 152
            +KEK     AEK   +    E AE+ K E  E    +K  +A+     K E+  + KER+
Sbjct: 5000 EKEKAEKEKAEKEKAEIEKAEKAEKEKAEKAEK---EKAEKAENEKAEKAEK--EKKERM 4836

Query: 153  KKLQTARDNYMIEAPFVEQ 171
            +K++  ++    E    E+
Sbjct: 4835 EKVRAEKEKARAEKEKAEK 4779


>gi|338240421|gb|AFNH01002956.1| Gregarina niphandrodes asmbl.3659,
             whole genome shotgun sequence
          Length = 24953

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 122   AEETGSLQKTLEAQRYSLSKREQKLQMKERLKKLQ 156
             A++T + +K  EAQ+ + +  E + ++KER  K+Q
Sbjct: 17068 AQKTEAEEKKAEAQKLTAALNESESEIKERKSKVQ 17172


>gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.3462,
             whole genome shotgun sequence
          Length = 43533

 Score = 26.2 bits (56), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 120   VEAEETGSLQKTLEAQRYSLSKREQKLQMKERL 152
             + A E   LQK L+A+   L++ E +L+  ERL
Sbjct: 23184 MRATELDRLQKELDARDAELTREEDRLKKLERL 23282


>gi|338244955|gb|AFNH01000687.1| Gregarina niphandrodes asmbl.15996,
             whole genome shotgun sequence
          Length = 60645

 Score = 25.8 bits (55), Expect = 7.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 114   LAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERLKK 154
             + ER    +++T  +++TL+AQR SLS  +     + R+++
Sbjct: 50481 MEERDDELSDDTAEVKETLKAQRVSLSTYQGISHQRSRIRE 50359


>gi|338241588|gb|AFNH01002371.1| Gregarina niphandrodes asmbl.3115,
            whole genome shotgun sequence
          Length = 12940

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 108  KYTGVELAERRKVEAEETGSLQKTLEAQRYSL-SKREQKLQMKERLKKLQTAR 159
            + TGV L   R      TG +  T++  RY+  + R  +  +  R K  +TAR
Sbjct: 3480 RLTGVRLTSVRLTSVRLTGVVGPTVDTSRYACDTSRPPREALSARAKVGETAR 3638


>gi|338241680|gb|AFNH01002325.1| Gregarina niphandrodes asmbl.3071,
             whole genome shotgun sequence
          Length = 18186

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +2

Query: 118   RKVEAEETGSLQKTLEAQRYSLSKREQKLQM-KERLKKLQTARD 160
             ++VEAE     +  LEAQR  + ++++++++ K+++  ++  RD
Sbjct: 10889 QQVEAERQQEERVRLEAQRLEVERQQRQVELDKQQMDLIKQQRD 11020


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.318    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,152,739
Number of Sequences: 3680
Number of extensions: 23005
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of query: 171
length of database: 5,120,956
effective HSP length: 88
effective length of query: 83
effective length of database: 4,797,116
effective search space: 398160628
effective search space used: 398160628
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)