TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= thalassiosira pseudonana (171 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 30 0.68 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 30 0.89 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 28 3.4 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 28 4.4 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 27 5.8 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 27 9.9 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 30.4 bits (67), Expect = 0.68 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +2 Query: 82 ELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSK 141 E EK + KEKL EK ++ E E+ K+E E +K + ++ L K Sbjct: 2463161 EKEKKEKLEKEKKEKLEKERLEKEKLEKEKKEKLEKEKLEKERLEK-EKLEKEKKEKLEK 2463337 Query: 142 REQKLQMKERLKK 154 +++ + KERLKK Sbjct: 2463338 EKKEKEEKERLKK 2463376 Score = 28.9 bits (63), Expect = 2.0 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Frame = -2 Query: 43 LPELKSFLKDLNGVDLY---KNVEVHFISGKRAVLTIFEGGRELEKITLSDYNDKEKLHT 99 L E K LKDL D+Y ++ E+ I+ + + F+ K L +K ++ Sbjct: 6105502 LKENKESLKDLKEDDIYEILEDYEIDNINDPKQKIKFFKKVENKRK-RLKIEEEKNRMSE 6105326 Query: 100 LFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERLKKLQTAR 159 ++ +K+ + + +VE E+ L K LE ++ L K E + + KE L K++ + Sbjct: 6105325 EEKKEFLIKFEEEKQKLKTEVEEEKKEFLIK-LEEEKQKL-KTEVEEEKKEFLIKVEEEK 6105152 Query: 160 DNYMIE 165 ++I+ Sbjct: 6105151 KEFLIK 6105134 Score = 28.1 bits (61), Expect = 3.4 Identities = 26/79 (32%), Positives = 39/79 (49%) Frame = +3 Query: 75 TIFEGGRELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEA 134 TI E LE L +KE+L EK ++ E E+ K+EAE ++ LEA Sbjct: 1248606 TIKENKERLEAERL----EKERLEAERLEKEKLE---AERLEKEKLEAERLE--KERLEA 1248758 Query: 135 QRYSLSKREQKLQMKERLK 153 +R+ + E + KERL+ Sbjct: 1248759 ERFEKERLESERLEKERLE 1248815 Score = 28.1 bits (61), Expect = 3.4 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Frame = +3 Query: 93 DKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERL 152 +KEKL EK ++ E E+ K+EAE ++ LEA+R K E + KERL Sbjct: 1248948 EKEKLEAERLEKEKLE---AERLEKEKLEAERLE--KERLEAERLEKEKLEAERLEKERL 1249112 Query: 153 -------KKLQTAR------DNYMIEAPFVEQ 171 +KL+ R +N ++EA +E+ Sbjct: 1249113 EAERLEKEKLEAERLEKERIENEILEAERLER 1249208 Score = 27.7 bits (60), Expect = 4.4 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Frame = +3 Query: 93 DKEKLHTLFAEKGFVKYTGVELAERRKVEAE-------ETGSLQKT-LEAQRYSLSKREQ 144 +KEKL EK ++ E E+ K+EAE E L+K LEA+R + E Sbjct: 1249008 EKEKLEAERLEKERLE---AERLEKEKLEAERLEKERLEAERLEKEKLEAERLEKERIEN 1249178 Query: 145 KLQMKERLKKLQ 156 ++ ERL++L+ Sbjct: 1249179 EILEAERLERLE 1249214 Score = 26.6 bits (57), Expect = 9.9 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +3 Query: 93 DKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERL 152 +KE+L EK ++ E E+ K+EAE ++ LEA+R K E + KERL Sbjct: 1248888 EKERLEAERLEKERLE---AERLEKEKLEAERLE--KEKLEAERLEKEKLEAERLEKERL 1249052 Query: 153 K 153 + Sbjct: 1249053 E 1249055 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 30.0 bits (66), Expect = 0.89 Identities = 18/74 (24%), Positives = 40/74 (54%) Frame = -1 Query: 81 RELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLS 140 +ELE+ L++ +KEKL +K + ELA++ + E ++ K + Q+ Sbjct: 4574156 KELEEKELAEKLEKEKLEKELTDKLEKEKKEKELADKLEKEKQDKELADKLEKEQKEKEE 4573977 Query: 141 KREQKLQMKERLKK 154 K+ ++ ++ ++L+K Sbjct: 4573976 KQRKEKELADKLEK 4573935 Score = 27.3 bits (59), Expect = 5.8 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = -1 Query: 82 ELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSK 141 +LEK L+D +KEK A+K + ELA++ + E +E Q+ + L K Sbjct: 4574111 KLEK-ELTDKLEKEKKEKELADKLEKEKQDKELADKLEKEQKEKEEKQRKEKELADKLEK 4573935 Query: 142 REQKLQMKERLKK 154 +Q ++ ++L K Sbjct: 4573934 EKQDKELADKLAK 4573896 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 28.1 bits (61), Expect = 3.4 Identities = 25/99 (25%), Positives = 47/99 (47%) Frame = -2 Query: 73 VLTIFEGGRELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTL 132 +LTI + E+ + T + +KEKL EK E E+ ++E E L Sbjct: 4819672 MLTIKQKQMEIIEKTKQEQFEKEKLEKERLEK--------ERLEKERLEKER-------L 4819538 Query: 133 EAQRYSLSKREQKLQMKERLKKLQTARDNYMIEAPFVEQ 171 E +R + E++ KERL++ ++ ++ +E +E+ Sbjct: 4819537 EKERLEKERLEKERLEKERLERERSQKEKEKLEKERLEK 4819421 Score = 28.1 bits (61), Expect = 3.4 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Frame = +2 Query: 82 ELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLE-----AQR 136 ELEK + + EKL L E E +K+E + QK ++ ++ Sbjct: 1047584 ELEKQKAEEEEEAEKLRKL-----------KEQEEEQKLELKRIRDEQKKIDDEKERIEK 1047730 Query: 137 YSLSKREQKL--QMKERLKKLQ 156 ++ K +Q++ Q KERL+KLQ Sbjct: 1047731 ENIEKEKQRIENQEKERLEKLQ 1047796 Score = 27.7 bits (60), Expect = 4.4 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = -2 Query: 76 IFEGGRELEKITLSDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQ 135 IFEG LE I + N KEK+ L E KY R +VE + + + +E Sbjct: 659692 IFEGVGNLEMIKQQNENMKEKIKRL--EPLIEKY------NRLQVEHNQLINEKNQMELT 659537 Query: 136 RYSLSKREQKLQMKERLKKLQ 156 S+ K++ Q+++++ +L+ Sbjct: 659536 FGSIDKQQSTQQLQQKIIQLE 659474 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 27.7 bits (60), Expect = 4.4 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = +2 Query: 89 SDYNDKEKLHTLFAEKGFVKYTGVELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQM 148 S + KEK H + K ++ + L + +KV EET + T+E S SK+ +K + Sbjct: 3545561 SKMSTKEKSHKKESTKKKLEEKSIALPKTKKV--EETSTTTTTIE----SKSKKVEKTKK 3545722 Query: 149 KERLKKLQ 156 E KK++ Sbjct: 3545723 AEENKKVE 3545746 Score = 27.3 bits (59), Expect = 5.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 113 ELAERRKVEAEETGSLQKTLEAQRYSLSKREQKLQMKERLKK 154 E E+ K+E EE + + + + K Q+ Q+KERL++ Sbjct: 3816354 ERLEKEKIEKEERENQLRLAKEKEEKEEKERQERQLKERLER 3816479 Score = 27.3 bits (59), Expect = 5.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 129 QKTLEAQRYSLSKREQKLQMKERLKKLQT 157 Q+TLE Q+ L K+++KLQ K+ K+ + Sbjct: 5271577 QQTLEIQQKELKKQQRKLQPKQPRSKISS 5271663 Score = 26.6 bits (57), Expect = 9.9 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -3 Query: 54 NGVDLYKNV----EVHFISGKRAVLTIFEGGRELEKITLSDYNDKEKLHTLFAE 103 NG+ Y + V ++S R I+ + +K+ S+YN K LH+L E Sbjct: 1269417 NGIREYDIIIDIPSVDYLSQSRKSWIIYVSNQLKQKMGSSNYNKKRPLHSLLKE 1269256 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 27.3 bits (59), Expect = 5.8 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 129 QKTLEAQRYSLSKREQKLQMKERLKKLQTARDNYMIE 165 +K LE Q K+ QKL+ K KKLQ +IE Sbjct: 3489780 EKQLEEQMKKREKKLQKLERKRLYKKLQDDEKQKLIE 3489890 Score = 27.3 bits (59), Expect = 5.8 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -2 Query: 129 QKTLEAQRYSLSKREQKLQMKERLKKLQTARDNYMIE 165 +K LE Q K+ QKL+ K KKLQ +IE Sbjct: 2542006 EKQLEEQMKKREKKLQKLERKRLYKKLQDDEKQKLIE 2541896 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 26.6 bits (57), Expect = 9.9 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +3 Query: 137 YSLSKREQKLQMKERLKKLQTARDNYMI 164 + LS E++LQ K++ KKL+ + NY++ Sbjct: 2260050 FLLSLVEKRLQKKKKKKKLKKKKKNYLL 2260133 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.318 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,348,850 Number of Sequences: 6 Number of extensions: 42380 Number of successful extensions: 299 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 228 length of query: 171 length of database: 11,314,357 effective HSP length: 93 effective length of query: 78 effective length of database: 11,313,799 effective search space: 882476322 effective search space used: 882476322 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)