TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323451426|gb|EGB07303.1| selenoprotein [Aureococcus
anophagefferens]
         (128 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ...    27   4.6  
gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    26   6.0  

>gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun
              sequence
          Length = 1908399

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 51     LEIDYVRGKPPTLIMMDGDAEVERVDLAPYSTDELHALM 89
              +E+DY R + P L+MM    ++  VD + Y T  +  +M
Sbjct: 192198 IEVDYSRHQTPILVMMLVILQLIDVDYSYYQTSMIAMMM 192314



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 51    LEIDYVRGKPPTLIMMDGDAEVERVDLAPYSTDELHALM 89
             +E+DY+  + P ++MM+   ++  +D   Y T  +  +M
Sbjct: 81560 IEVDYIHHQTPMIVMMEVILQLILLDYIHYQTPMIVMMM 81676



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 75     VDLAPYSTDELHALMQEKGFARKEAEPAGTREQVLHRAPR 114
              + L      +LH  +Q+    RKE +    ++Q+LH+ PR
Sbjct: 217852 IPLQQLQLPQLHQQLQQL*MKRKERQLNQRQQQLLHQRPR 217733


>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 22     ETCSAXKLNKLPEVKRFVKESGHADTY 48
              ET +  KLN LP +KRF    G AD Y
Sbjct: 882964 ETTTTTKLNILPNLKRF---KGQADYY 883035


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,586,442
Number of Sequences: 25
Number of extensions: 23667
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 43
length of query: 128
length of database: 10,339,736
effective HSP length: 88
effective length of query: 40
effective length of database: 10,337,536
effective search space: 413501440
effective search space used: 413501440
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)