TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323451426|gb|EGB07303.1| selenoprotein [Aureococcus
anophagefferens]
         (128 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849599|gb|ADNL01001004.1| Astrammina rara contig01172, who...    23   2.1  
gi|330847637|gb|ADNL01002966.1| Astrammina rara contig00335, who...    21   8.1  

>gi|330849599|gb|ADNL01001004.1| Astrammina rara contig01172, whole
           genome shotgun sequence
          Length = 882

 Score = 23.1 bits (48), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 64  IMMDGDAEVERVDLAPYSTDELHALMQEKGFA 95
           + MDG  E+    ++ Y  DEL+++    G A
Sbjct: 432 LSMDGITEISNYGMSDYFRDELNSIDNVNGEA 527


>gi|330847637|gb|ADNL01002966.1| Astrammina rara contig00335, whole
           genome shotgun sequence
          Length = 2766

 Score = 21.2 bits (43), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 79  PYSTDELHALMQEKGF 94
           P+S D L  L  EKGF
Sbjct: 682 PFSVDGLRLLNLEKGF 729


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,531
Number of Sequences: 3231
Number of extensions: 1279
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 483,365
effective HSP length: 65
effective length of query: 63
effective length of database: 273,350
effective search space: 17221050
effective search space used: 17221050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)