TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323451426|gb|EGB07303.1| selenoprotein [Aureococcus
anophagefferens]
         (128 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325194232|emb|FR825089.1| Albugo laibachii Nc14, genomic cont...    27   2.8  
gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic cont...    26   8.1  
gi|325187045|emb|FR824173.1| Albugo laibachii Nc14, genomic cont...    26   8.1  
gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic cont...    26   8.1  

>gi|325194232|emb|FR825089.1| Albugo laibachii Nc14, genomic contig
           CONTIG_1615_NC14_v4_1844_65
          Length = 1844

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 75  VDLAPYSTDELHALMQEKGFARKEAEPAGTREQVLHRAPR 114
           +DL  +    +   ++ +GF R+ ++  G   Q +HRA R
Sbjct: 776 LDLQGHGKQAIRTAVESQGFGRRTSKRKGFSNQEIHRAQR 657


>gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic contig
             CONTIG_82_NC14_v4_91335_233
          Length = 91335

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 109   LHRAPRSAQADAVA 122
             LHRAPR++QA AVA
Sbjct: 48772 LHRAPRASQAPAVA 48731


>gi|325187045|emb|FR824173.1| Albugo laibachii Nc14, genomic contig
             CONTIG_128_NC14_v4_69976_248
          Length = 69976

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = -2

Query: 1     MLRRLVLACAAALAAAATGKIETCSAXK---LNKLPE 34
             M R LVL CA A      G   TCS+      N LP+
Sbjct: 60255 MRRHLVLLCAVACRTVKLGASRTCSSLHGPYCNHLPQ 60145


>gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic contig
             CONTIG_162_NC14_v4_57516_227
          Length = 57516

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 76    DLAPYSTDELHALMQEKGFARKEAEPAGTREQVLHR 111
             D   Y+ +ELHAL  + G A K+       ++ LHR
Sbjct: 15798 DFTLYNGEELHALSMQTGNALKDVLKQLPEQKDLHR 15905


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,526,655
Number of Sequences: 3816
Number of extensions: 35731
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of query: 128
length of database: 10,913,379
effective HSP length: 88
effective length of query: 40
effective length of database: 10,577,571
effective search space: 423102840
effective search space used: 423102840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)